RchiOBHm_Chr5g0046111
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000656
Physical Location & Seq
Forward (+)
42190600 .. 42193525
2926 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32414

Sequence Viewer

Length: 510 bp
ATGACTTTAAGAGCTGCAGTAGAGCTCAATGTCTTCTCAGGGCGTGGAGTTCATCTCACATCAGAAGAAATCAAAAATCCGAGTGCAGCAATTGCGAATTTGGAGCGAATACTAAAACTGCTCAGCGTCAACTCCCTCCTTTCCGCATCTCTAAGACCAAGTGCAAATGACAACACAGTGCAAGAAGTGGCTTATGGCCTAACAAAGAAGGCACTTTGCCTAATTCCAAATGAAGATGGAAGATTGTACGTGCTTAAACACATGATGCTTGAACCAGAGTGTTCTCCTTTCGACAAAGCCCACGGACAGTCCTTGTATGAATATATGTCTGAGAAGCCTGAGATGATTCAATTGTTTGATAAGAACGTGCTTGAGGTTTATAGAGGCTTCAATGAGTTAAAAGAGCTAATGGATGTCGGGGGTGGCGATGGAAGTTCGATTGCAAGAATAGTGTCTATGCATCTTCATATCCATGGCATCAACTTCAATGTACCAAGTGTTATTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00950 ko01110 map00950 map01110
Pfam Domains
Protein Families
Dimerisation Methyltransf_2

Protein Analysis

169

Amino Acids

18.68

Weight (kDa)

5.85

Isoelectric Point (pI)

43.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_2 PF00891 96 - 169 2.7e-09 O-methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000656)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g09630 FvH4_3g13140 FvH4_3g13141 FvH4_3g13160 FvH4_3g13170 FvH4_6g14540
malus_domestica MD10G1257600.v1.1
prunus_persica Prupe.4G086200_v2.0.a1
pyrus_communis pycom05g25920 pycom10g21380
rosa_chinensis RchiOBHm_Chr5g0014991 RchiOBHm_Chr5g0046111 RchiOBHm_Chr5g0056661 RchiOBHm_Chr7g0209941 RchiOBHm_Chr7g0211601 RchiOBHm_Chr7g0228691
rosa_laevigata RLG00000002994 RLG00000003075 RLG00000032124 RLG00000032125 RLG00000032158 RLG00000034388 RLG00000034564 RLG00000035118
rosa_multiflora Rmu_sc0003162.1_g000007 Rmu_sc0003162.1_g000010 Rmu_sc0003760.1_g000034 Rmu_sc0004232.1_g000016 Rmu_sc0004232.1_g000017 Rmu_sc0004232.1_g000023 Rmu_sc0004889.1_g000017 Rmu_sc0008669.1_g000001 Rmu_sc0009240.1_g000017 Rmu_sc0009255.1_g000012 Rmu_sc0013112.1_g000007
rosa_roxburghii Rroxscaffold_1G00023690 Rroxscaffold_1G00035370 Rroxscaffold_1G00035380 Rroxscaffold_1G00061590 Rroxscaffold_1G00061940 Rroxscaffold_3G00230880 Rroxscaffold_3G00247690
rosa_rugosa Rorug05G0019200 Rorug05G0022400 Rorug05G0225700 Rorug05G0246400 Rorug05G0301100 Rorug07G0117600 Rorug07G0126200
rosa_samantha Rh5AG114200 Rh5AG114300 Rh5AG117800 Rh5BG111300 Rh5BG115000 Rh5BG314800 Rh5BG383300 Rh5CG126300 Rh5CG359500 Rh5CG406400 Rh5DG110100 Rh5DG110600 Rh5DG114500 Rh5DG396000 Rh5DG396100 Rh7AG251400 Rh7AG403800 Rh7BG246000 Rh7CG268200 Rh7DG258000 Rh7DG266400
rosa_wichuraiana Rw5G009920 Rw5G010150 Rw5G028650 Rw5G034830 Rw7G021330 Rw7G022120 Rw7G033560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 144
AcsI RAATTY 1 cut(s) 97
AfaI GTAC 2 cut(s) 248, 492
AgsI TTSAA 4 cut(s) 272, 350, 391, 487
AluBI AGCT 3 cut(s) 14, 25, 406
AluI AGCT 3 cut(s) 14, 25, 406
Alw21I GWGCWC 1 cut(s) 27
AoxI GGCC 1 cut(s) 196
ApeKI GCWGC 2 cut(s) 14, 86
ApoI RAATTY 1 cut(s) 97
BanII GRGCYC 1 cut(s) 27
BbsI GAAGAC 1 cut(s) 25
Bbv12I GWGCWC 1 cut(s) 27
BbvI GCAGC 1 cut(s) 98
BccI CCATC 2 cut(s) 230, 422
BfmI CTRYAG 1 cut(s) 15
BisI GCNGC 2 cut(s) 15, 87
BlpI GCTNAGC 1 cut(s) 122
BlsI GCNGC 2 cut(s) 16, 88
BmsI GCATC 4 cut(s) 155, 255, 469, 486
BpiI GAAGAC 1 cut(s) 25
BplI GAGNNNNNCTC 2 cut(s) 39, 71
Bpu1102I GCTNAGC 1 cut(s) 122
BpuEI CTTGAG 1 cut(s) 392
BsaAI YACGTR 1 cut(s) 250
BsaJI CCNNGG 2 cut(s) 301, 472
BseDI CCNNGG 2 cut(s) 301, 472
BseGI GGATG 1 cut(s) 418
BseMII CTCAG 4 cut(s) 51, 136, 321, 330
BseXI GCAGC 1 cut(s) 98
BsgI GTGCAG 1 cut(s) 105
BshFI GGCC 1 cut(s) 198
BsiHKAI GWGCWC 1 cut(s) 27
BsnI GGCC 1 cut(s) 198
Bsp1286I GDGCHC 1 cut(s) 27
Bsp1720I GCTNAGC 1 cut(s) 122
Bsp19I CCATGG 1 cut(s) 472
BspACI CCGC 1 cut(s) 144
BspANI GGCC 1 cut(s) 198
BspCNI CTCAG 4 cut(s) 50, 135, 322, 331
BspMAI CTGCAG 1 cut(s) 19
BssECI CCNNGG 2 cut(s) 301, 472
BssT1I CCWWGG 1 cut(s) 472
Bst4CI ACNGT 2 cut(s) 178, 309
BstAPI GCANNNNNTGC 1 cut(s) 92
BstBAI YACGTR 1 cut(s) 250
BstDEI CTNAG 5 cut(s) 37, 122, 152, 330, 339
BstDSI CCRYGG 2 cut(s) 301, 472
BstF5I GGATG 1 cut(s) 418
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstSFI CTRYAG 1 cut(s) 15
BstV1I GCAGC 1 cut(s) 98
BstV2I GAAGAC 1 cut(s) 25
BsuRI GGCC 1 cut(s) 198
BtgI CCRYGG 2 cut(s) 301, 472
BtgZI GCGATG 1 cut(s) 441
BtsCI GGATG 1 cut(s) 418
BtsIMutI CAGTG 1 cut(s) 183
CseI GACGC 1 cut(s) 115
Csp6I GTAC 2 cut(s) 247, 491
CviAII CATG 2 cut(s) 262, 473
CviJI RGCY 8 cut(s) 14, 25, 191, 198, 299, 337, 387, 406
CviKI_1 RGCY 8 cut(s) 14, 25, 191, 198, 299, 337, 387, 406
CviQI GTAC 2 cut(s) 247, 491
DdeI CTNAG 5 cut(s) 37, 122, 152, 330, 339
Ecl136II GAGCTC 1 cut(s) 25
Eco130I CCWWGG 1 cut(s) 472
Eco24I GRGCYC 1 cut(s) 27
Eco53kI GAGCTC 1 cut(s) 25
EcoICRI GAGCTC 1 cut(s) 25
EcoT14I CCWWGG 1 cut(s) 472
EcoT22I ATGCAT 1 cut(s) 462
EcoT38I GRGCYC 1 cut(s) 27
ErhI CCWWGG 1 cut(s) 472
FaeI CATG 2 cut(s) 265, 476
FaiI YATR 9 cut(s) 195, 263, 318, 324, 326, 381, 458, 468, 474
FatI CATG 2 cut(s) 261, 472
Fnu4HI GCNGC 2 cut(s) 15, 87
FokI GGATG 1 cut(s) 425
FriOI GRGCYC 1 cut(s) 27
Fsp4HI GCNGC 2 cut(s) 15, 87
GluI GCNGC 2 cut(s) 15, 87
HaeIII GGCC 1 cut(s) 198
HgaI GACGC 1 cut(s) 115
Hin1II CATG 2 cut(s) 265, 476
HincII GTYRAC 1 cut(s) 130
HindII GTYRAC 1 cut(s) 130
HinfI GANTC 1 cut(s) 346
Hpy166II GTNNAC 1 cut(s) 130
Hpy188I TCNGA 3 cut(s) 64, 81, 331
Hpy8I GTNNAC 1 cut(s) 130
HpyAV CCTTC 1 cut(s) 202
HpyCH4III ACNGT 2 cut(s) 178, 309
HpyCH4IV ACGT 2 cut(s) 249, 366
HpyCH4V TGCA 6 cut(s) 17, 86, 164, 181, 443, 460
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
HpyF3I CTNAG 5 cut(s) 37, 122, 152, 330, 339
HpySE526I ACGT 2 cut(s) 249, 366
Hsp92II CATG 2 cut(s) 265, 476
LmnI GCTCC 1 cut(s) 103
LpnPI CCDG 3 cut(s) 24, 288, 351
Lsp1109I GCAGC 1 cut(s) 98
LweI GCATC 4 cut(s) 155, 255, 469, 486
MaeII ACGT 2 cut(s) 249, 366
MboII GAAGA 5 cut(s) 25, 77, 245, 252, 455
MfeI CAATTG 2 cut(s) 90, 350
MhlI GDGCHC 1 cut(s) 27
MluCI AATT 4 cut(s) 90, 97, 222, 350
MnlI CCTC 3 cut(s) 146, 367, 377
Mph1103I ATGCAT 1 cut(s) 462
MseI TTAA 4 cut(s) 8, 255, 398, 508
MslI CAYNNNNRTG 1 cut(s) 471
MunI CAATTG 2 cut(s) 90, 350
MwoI GCNNNNNNNGC 1 cut(s) 92
NcoI CCATGG 1 cut(s) 472
NlaIII CATG 2 cut(s) 265, 476
NsiI ATGCAT 1 cut(s) 462
PcsI WCGNNNNNNNCGW 1 cut(s) 423
PfeI GAWTC 1 cut(s) 346
PkrI GCNGC 2 cut(s) 16, 88
Ppu21I YACGTR 1 cut(s) 250
Psp124BI GAGCTC 1 cut(s) 27
PstI CTGCAG 1 cut(s) 19
RsaI GTAC 2 cut(s) 248, 492
RsaNI GTAC 2 cut(s) 247, 491
RseI CAYNNNNRTG 1 cut(s) 471
SacI GAGCTC 1 cut(s) 27
SaqAI TTAA 4 cut(s) 8, 255, 398, 508
SatI GCNGC 2 cut(s) 15, 87
SduI GDGCHC 1 cut(s) 27
SetI ASST 6 cut(s) 16, 27, 252, 369, 378, 408
SfaNI GCATC 4 cut(s) 155, 255, 469, 486
SfcI CTRYAG 1 cut(s) 15
SmiMI CAYNNNNRTG 1 cut(s) 471
SmlI CTYRAG 1 cut(s) 371
SmoI CTYRAG 1 cut(s) 371
Sse9I AATT 4 cut(s) 90, 97, 222, 350
SsiI CCGC 1 cut(s) 144
SstI GAGCTC 1 cut(s) 27
StyI CCWWGG 1 cut(s) 472
TaaI ACNGT 2 cut(s) 178, 309
TaiI ACGT 2 cut(s) 252, 369
TaqI TCGA 2 cut(s) 291, 437
TasI AATT 4 cut(s) 90, 97, 222, 350
TfiI GAWTC 1 cut(s) 346
Tru1I TTAA 4 cut(s) 8, 255, 398, 508
Tru9I TTAA 4 cut(s) 8, 255, 398, 508
TscAI CASTG 1 cut(s) 183
TseI GCWGC 2 cut(s) 14, 86
TspDTI ATGAA 4 cut(s) 41, 246, 333, 455
TspGWI ACGGA 1 cut(s) 318
TspRI CASTG 1 cut(s) 183
XapI RAATTY 1 cut(s) 97
Zsp2I ATGCAT 1 cut(s) 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.