Rorug05G0246400
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000656
Physical Location & Seq
Reverse (-)
26516085 .. 26518809
2725 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0246400.1

Sequence Viewer

Length: 258 bp
ATGAGTACGCTTGATGTGCCCATGGAGGATAGTAGCGGTGGTGTCCGACCTAAGGCTCAATTGAAGCAAATGGGGCCTGCAGAGAAGGAGGCATCTGTGCACGAAGAAGTCAAGAGAATGCAGAGGCTGCCTGCACACAGCTCCTATGTTACGCATCGATTGCGGGTTCTTAATAAGATTCTGCAGCTCCTGTCCATTCAGAGAACTACTTCACAAGATCGGGAGTTGGAATTGCTTTTTGCGGGGCTGTCTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00950 ko01100 ko01110 map00940 map00950 map01100 map01110
Pfam Domains
Protein Families
Dimerisation Methyltransf_2

Protein Analysis

85

Amino Acids

9.58

Weight (kDa)

9.3

Isoelectric Point (pI)

56.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000656)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g09630 FvH4_3g13140 FvH4_3g13141 FvH4_3g13160 FvH4_3g13170 FvH4_6g14540
malus_domestica MD10G1257600.v1.1
prunus_persica Prupe.4G086200_v2.0.a1
pyrus_communis pycom05g25920 pycom10g21380
rosa_chinensis RchiOBHm_Chr5g0014991 RchiOBHm_Chr5g0046111 RchiOBHm_Chr5g0056661 RchiOBHm_Chr7g0209941 RchiOBHm_Chr7g0211601 RchiOBHm_Chr7g0228691
rosa_laevigata RLG00000002994 RLG00000003075 RLG00000032124 RLG00000032125 RLG00000032158 RLG00000034388 RLG00000034564 RLG00000035118
rosa_multiflora Rmu_sc0003162.1_g000007 Rmu_sc0003162.1_g000010 Rmu_sc0003760.1_g000034 Rmu_sc0004232.1_g000016 Rmu_sc0004232.1_g000017 Rmu_sc0004232.1_g000023 Rmu_sc0004889.1_g000017 Rmu_sc0008669.1_g000001 Rmu_sc0009240.1_g000017 Rmu_sc0009255.1_g000012 Rmu_sc0013112.1_g000007
rosa_roxburghii Rroxscaffold_1G00023690 Rroxscaffold_1G00035370 Rroxscaffold_1G00035380 Rroxscaffold_1G00061590 Rroxscaffold_1G00061940 Rroxscaffold_3G00230880 Rroxscaffold_3G00247690
rosa_rugosa Rorug05G0019200 Rorug05G0022400 Rorug05G0225700 Rorug05G0246400 Rorug05G0301100 Rorug07G0117600 Rorug07G0126200
rosa_samantha Rh5AG114200 Rh5AG114300 Rh5AG117800 Rh5BG111300 Rh5BG115000 Rh5BG314800 Rh5BG383300 Rh5CG126300 Rh5CG359500 Rh5CG406400 Rh5DG110100 Rh5DG110600 Rh5DG114500 Rh5DG396000 Rh5DG396100 Rh7AG251400 Rh7AG403800 Rh7BG246000 Rh7CG268200 Rh7DG258000 Rh7DG266400
rosa_wichuraiana Rw5G009920 Rw5G010150 Rw5G028650 Rw5G034830 Rw7G021330 Rw7G022120 Rw7G033560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 36, 163, 242
AfaI GTAC 1 cut(s) 7
AfiI CCNNNNNNNGG 1 cut(s) 52
AgsI TTSAA 1 cut(s) 64
AluBI AGCT 2 cut(s) 141, 187
AluI AGCT 2 cut(s) 141, 187
Alw21I GWGCWC 1 cut(s) 102
Alw44I GTGCAC 1 cut(s) 98
AlwNI CAGNNNCTG 2 cut(s) 127, 190
AoxI GGCC 1 cut(s) 74
ApaLI GTGCAC 1 cut(s) 98
ApeKI GCWGC 2 cut(s) 127, 184
Asp700I GAANNNNTTC 1 cut(s) 208
AspS9I GGNCC 1 cut(s) 74
AxyI CCTNAGG 1 cut(s) 51
BaeGI GKGCMC 2 cut(s) 21, 102
Bbv12I GWGCWC 1 cut(s) 102
BbvI GCAGC 2 cut(s) 114, 196
BfmI CTRYAG 2 cut(s) 78, 182
BisI GCNGC 2 cut(s) 128, 185
BlsI GCNGC 2 cut(s) 129, 186
BmgT120I GGNCC 1 cut(s) 74
BmiI GGNNCC 1 cut(s) 75
BmsI GCATC 2 cut(s) 101, 163
Bsa29I ATCGAT 1 cut(s) 157
BsaJI CCNNGG 1 cut(s) 21
Bsc4I CCNNNNNNNGG 1 cut(s) 52
Bse21I CCTNAGG 1 cut(s) 51
BseCI ATCGAT 1 cut(s) 157
BseDI CCNNGG 1 cut(s) 21
BseLI CCNNNNNNNGG 1 cut(s) 52
BseSI GKGCMC 2 cut(s) 21, 102
BseXI GCAGC 2 cut(s) 114, 196
BsgI GTGCAG 1 cut(s) 117
BshFI GGCC 1 cut(s) 76
BshVI ATCGAT 1 cut(s) 157
BsiHKAI GWGCWC 1 cut(s) 102
BslI CCNNNNNNNGG 1 cut(s) 52
BsmI GAATGC 1 cut(s) 123
BsnI GGCC 1 cut(s) 76
Bsp1286I GDGCHC 2 cut(s) 21, 102
Bsp143I GATC 1 cut(s) 217
Bsp19I CCATGG 1 cut(s) 21
BspACI CCGC 3 cut(s) 36, 163, 242
BspANI GGCC 1 cut(s) 76
BspDI ATCGAT 1 cut(s) 157
BspLI GGNNCC 1 cut(s) 75
BspMAI CTGCAG 2 cut(s) 82, 186
BssECI CCNNGG 1 cut(s) 21
BssMI GATC 1 cut(s) 217
BssT1I CCWWGG 1 cut(s) 21
BstAPI GCANNNNNTGC 2 cut(s) 127, 160
BstC8I GCNNGC 2 cut(s) 78, 132
BstDEI CTNAG 1 cut(s) 51
BstDSI CCRYGG 1 cut(s) 21
BstKTI GATC 1 cut(s) 220
BstMBI GATC 1 cut(s) 217
BstMWI GCNNNNNNNGC 4 cut(s) 16, 73, 127, 160
BstSFI CTRYAG 2 cut(s) 78, 182
BstSLI GKGCMC 2 cut(s) 21, 102
BstV1I GCAGC 2 cut(s) 114, 196
Bsu15I ATCGAT 1 cut(s) 157
Bsu36I CCTNAGG 1 cut(s) 51
BsuRI GGCC 1 cut(s) 76
BsuTUI ATCGAT 1 cut(s) 157
BtgI CCRYGG 1 cut(s) 21
Cac8I GCNNGC 2 cut(s) 78, 132
CaiI CAGNNNCTG 2 cut(s) 127, 190
Cfr13I GGNCC 1 cut(s) 74
ClaI ATCGAT 1 cut(s) 157
Csp6I GTAC 1 cut(s) 6
CviAII CATG 1 cut(s) 22
CviJI RGCY 6 cut(s) 56, 76, 127, 141, 187, 247
CviKI_1 RGCY 6 cut(s) 56, 76, 127, 141, 187, 247
CviQI GTAC 1 cut(s) 6
DdeI CTNAG 1 cut(s) 51
DpnI GATC 1 cut(s) 219
DpnII GATC 1 cut(s) 217
Eco130I CCWWGG 1 cut(s) 21
Eco81I CCTNAGG 1 cut(s) 51
EcoO109I RGGNCCY 1 cut(s) 74
EcoT14I CCWWGG 1 cut(s) 21
ErhI CCWWGG 1 cut(s) 21
FaeI CATG 1 cut(s) 25
FaiI YATR 3 cut(s) 23, 147, 256
FatI CATG 1 cut(s) 21
FauI CCCGC 2 cut(s) 156, 235
Fnu4HI GCNGC 2 cut(s) 128, 185
Fsp4HI GCNGC 2 cut(s) 128, 185
GluI GCNGC 2 cut(s) 128, 185
HaeIII GGCC 1 cut(s) 76
Hin1II CATG 1 cut(s) 25
HinfI GANTC 1 cut(s) 178
Hpy166II GTNNAC 1 cut(s) 100
Hpy188I TCNGA 2 cut(s) 47, 201
Hpy188III TCNNGA 2 cut(s) 112, 221
Hpy8I GTNNAC 1 cut(s) 100
HpyAV CCTTC 1 cut(s) 79
HpyCH4V TGCA 5 cut(s) 80, 100, 121, 134, 184
HpyF10VI GCNNNNNNNGC 4 cut(s) 16, 73, 127, 160
HpyF3I CTNAG 1 cut(s) 51
Hsp92II CATG 1 cut(s) 25
Kzo9I GATC 1 cut(s) 217
LmnI GCTCC 2 cut(s) 146, 192
LpnPI CCDG 3 cut(s) 90, 144, 203
Lsp1109I GCAGC 2 cut(s) 114, 196
LweI GCATC 2 cut(s) 101, 163
MaeIII GTNAC 1 cut(s) 148
MalI GATC 1 cut(s) 219
MboI GATC 1 cut(s) 217
MboII GAAGA 1 cut(s) 116
MfeI CAATTG 1 cut(s) 59
MhlI GDGCHC 2 cut(s) 21, 102
MluCI AATT 2 cut(s) 59, 230
MmeI TCCRAC 2 cut(s) 70, 207
MnlI CCTC 3 cut(s) 19, 82, 117
MroXI GAANNNNTTC 1 cut(s) 208
MseI TTAA 1 cut(s) 171
MunI CAATTG 1 cut(s) 59
Mva1269I GAATGC 1 cut(s) 123
MwoI GCNNNNNNNGC 4 cut(s) 16, 73, 127, 160
NcoI CCATGG 1 cut(s) 21
NdeII GATC 1 cut(s) 217
NlaIII CATG 1 cut(s) 25
NlaIV GGNNCC 1 cut(s) 75
PctI GAATGC 1 cut(s) 123
PdmI GAANNNNTTC 1 cut(s) 208
PfeI GAWTC 1 cut(s) 178
PkrI GCNGC 2 cut(s) 129, 186
PspN4I GGNNCC 1 cut(s) 75
PspPI GGNCC 1 cut(s) 74
PstI CTGCAG 2 cut(s) 82, 186
PstNI CAGNNNCTG 2 cut(s) 127, 190
RsaI GTAC 1 cut(s) 7
RsaNI GTAC 1 cut(s) 6
SaqAI TTAA 1 cut(s) 171
SatI GCNGC 2 cut(s) 128, 185
Sau3AI GATC 1 cut(s) 217
Sau96I GGNCC 1 cut(s) 74
SduI GDGCHC 2 cut(s) 21, 102
SetI ASST 3 cut(s) 52, 143, 189
SfaNI GCATC 2 cut(s) 101, 163
SfcI CTRYAG 2 cut(s) 78, 182
Sse9I AATT 2 cut(s) 59, 230
SsiI CCGC 3 cut(s) 36, 163, 242
StyI CCWWGG 1 cut(s) 21
TaqI TCGA 1 cut(s) 157
TasI AATT 2 cut(s) 59, 230
TfiI GAWTC 1 cut(s) 178
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TseI GCWGC 2 cut(s) 127, 184
VneI GTGCAC 1 cut(s) 98
XmnI GAANNNNTTC 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.