RLG00000034564
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000656
Physical Location & Seq
Forward (+)
45052070 .. 45052609
540 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034564

Sequence Viewer

Length: 366 bp
ATGACTTTAAAAGCTGCAGTAGAGCTCAGTGTCTTCAATATCATTTATGAGTCAGGGCGTGGAGCTCATCTCACATCAGAAGAAATCAAAAATCCGAGTGCAGCGATTGCAAATTTGGAGCGAATACTAAAACTGCTCAGCGTCAACTCCCTCCTTTCCGCATCTCTAAGACCAAGTGCAAATGACAACACGGTGCAAGAAATGGCTGATGACCTAACAAAGAAGAGCTTGTACGTGCTTAAACACATGATGCTTGAACCAGAGTGTTCTCCTTTCGACAAAGCCCACGGACAAACCTTGGATGAATATATGTCCCAGAAGCCTGAGCTAATTCAATTGTTTGATGAGACTGAAGACCTGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00950 ko01110 map00950 map01110
Pfam Domains
Protein Families
Dimerisation Methyltransf_2

Protein Analysis

122

Amino Acids

13.52

Weight (kDa)

4.88

Isoelectric Point (pI)

47.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimerisation PF08100 1 - 56 6.5e-06 O-methyltransferase dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000656)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g09630 FvH4_3g13140 FvH4_3g13141 FvH4_3g13160 FvH4_3g13170 FvH4_6g14540
malus_domestica MD10G1257600.v1.1
prunus_persica Prupe.4G086200_v2.0.a1
pyrus_communis pycom05g25920 pycom10g21380
rosa_chinensis RchiOBHm_Chr5g0014991 RchiOBHm_Chr5g0046111 RchiOBHm_Chr5g0056661 RchiOBHm_Chr7g0209941 RchiOBHm_Chr7g0211601 RchiOBHm_Chr7g0228691
rosa_laevigata RLG00000002994 RLG00000003075 RLG00000032124 RLG00000032125 RLG00000032158 RLG00000034388 RLG00000034564 RLG00000035118
rosa_multiflora Rmu_sc0003162.1_g000007 Rmu_sc0003162.1_g000010 Rmu_sc0003760.1_g000034 Rmu_sc0004232.1_g000016 Rmu_sc0004232.1_g000017 Rmu_sc0004232.1_g000023 Rmu_sc0004889.1_g000017 Rmu_sc0008669.1_g000001 Rmu_sc0009240.1_g000017 Rmu_sc0009255.1_g000012 Rmu_sc0013112.1_g000007
rosa_roxburghii Rroxscaffold_1G00023690 Rroxscaffold_1G00035370 Rroxscaffold_1G00035380 Rroxscaffold_1G00061590 Rroxscaffold_1G00061940 Rroxscaffold_3G00230880 Rroxscaffold_3G00247690
rosa_rugosa Rorug05G0019200 Rorug05G0022400 Rorug05G0225700 Rorug05G0246400 Rorug05G0301100 Rorug07G0117600 Rorug07G0126200
rosa_samantha Rh5AG114200 Rh5AG114300 Rh5AG117800 Rh5BG111300 Rh5BG115000 Rh5BG314800 Rh5BG383300 Rh5CG126300 Rh5CG359500 Rh5CG406400 Rh5DG110100 Rh5DG110600 Rh5DG114500 Rh5DG396000 Rh5DG396100 Rh7AG251400 Rh7AG403800 Rh7BG246000 Rh7CG268200 Rh7DG258000 Rh7DG266400
rosa_wichuraiana Rw5G009920 Rw5G010150 Rw5G028650 Rw5G034830 Rw7G021330 Rw7G022120 Rw7G033560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 159
AcsI RAATTY 1 cut(s) 112
AfaI GTAC 1 cut(s) 233
AgsI TTSAA 3 cut(s) 37, 257, 335
AluBI AGCT 5 cut(s) 14, 25, 65, 228, 328
AluI AGCT 5 cut(s) 14, 25, 65, 228, 328
Alw21I GWGCWC 2 cut(s) 27, 67
Alw26I GTCTC 1 cut(s) 341
ApeKI GCWGC 2 cut(s) 14, 101
ApoI RAATTY 1 cut(s) 112
BanII GRGCYC 2 cut(s) 27, 67
BarI GAAGNNNNNNTAC 2 cut(s) 215, 247
BbsI GAAGAC 2 cut(s) 25, 360
Bbv12I GWGCWC 2 cut(s) 27, 67
BbvI GCAGC 1 cut(s) 113
BcoDI GTCTC 1 cut(s) 341
BfmI CTRYAG 1 cut(s) 15
BisI GCNGC 2 cut(s) 15, 102
BlpI GCTNAGC 1 cut(s) 137
BlsI GCNGC 2 cut(s) 16, 103
BmsI GCATC 2 cut(s) 170, 240
BpiI GAAGAC 2 cut(s) 25, 360
BplI GAGNNNNNCTC 2 cut(s) 54, 86
Bpu10I CCTNAGC 1 cut(s) 324
Bpu1102I GCTNAGC 1 cut(s) 137
BsaAI YACGTR 1 cut(s) 235
BsaJI CCNNGG 2 cut(s) 286, 297
BseDI CCNNGG 2 cut(s) 286, 297
BseGI GGATG 1 cut(s) 307
BseMII CTCAG 3 cut(s) 40, 151, 315
BseXI GCAGC 1 cut(s) 113
BsgI GTGCAG 1 cut(s) 120
BsiHKAI GWGCWC 2 cut(s) 27, 67
BslFI GGGAC 1 cut(s) 298
BsmAI GTCTC 1 cut(s) 341
BsmFI GGGAC 1 cut(s) 298
Bsp1286I GDGCHC 2 cut(s) 27, 67
Bsp1720I GCTNAGC 1 cut(s) 137
BspACI CCGC 1 cut(s) 159
BspCNI CTCAG 3 cut(s) 39, 150, 316
BspMAI CTGCAG 1 cut(s) 19
BspQI GCTCTTC 1 cut(s) 218
BssECI CCNNGG 2 cut(s) 286, 297
BssT1I CCWWGG 1 cut(s) 297
Bst4CI ACNGT 1 cut(s) 193
Bst6I CTCTTC 1 cut(s) 218
BstAPI GCANNNNNTGC 1 cut(s) 107
BstBAI YACGTR 1 cut(s) 235
BstDEI CTNAG 4 cut(s) 26, 137, 167, 324
BstDSI CCRYGG 1 cut(s) 286
BstF5I GGATG 1 cut(s) 307
BstMAI GTCTC 1 cut(s) 341
BstMWI GCNNNNNNNGC 1 cut(s) 107
BstSFI CTRYAG 1 cut(s) 15
BstV1I GCAGC 1 cut(s) 113
BstV2I GAAGAC 2 cut(s) 25, 360
BtgI CCRYGG 1 cut(s) 286
BtsCI GGATG 1 cut(s) 307
BtsIMutI CAGTG 1 cut(s) 34
CseI GACGC 1 cut(s) 130
Csp6I GTAC 1 cut(s) 232
CviAII CATG 1 cut(s) 247
CviJI RGCY 8 cut(s) 14, 25, 65, 206, 228, 284, 322, 328
CviKI_1 RGCY 8 cut(s) 14, 25, 65, 206, 228, 284, 322, 328
CviQI GTAC 1 cut(s) 232
DdeI CTNAG 4 cut(s) 26, 137, 167, 324
DraI TTTAAA 1 cut(s) 9
Eam1104I CTCTTC 1 cut(s) 218
EarI CTCTTC 1 cut(s) 218
Ecl136II GAGCTC 2 cut(s) 25, 65
Eco130I CCWWGG 1 cut(s) 297
Eco24I GRGCYC 2 cut(s) 27, 67
Eco53kI GAGCTC 2 cut(s) 25, 65
EcoICRI GAGCTC 2 cut(s) 25, 65
EcoT14I CCWWGG 1 cut(s) 297
EcoT38I GRGCYC 2 cut(s) 27, 67
ErhI CCWWGG 1 cut(s) 297
FaeI CATG 1 cut(s) 250
FaiI YATR 4 cut(s) 48, 248, 309, 311
FalI AAGNNNNNCTT 2 cut(s) 212, 244
FaqI GGGAC 1 cut(s) 298
FatI CATG 1 cut(s) 246
Fnu4HI GCNGC 2 cut(s) 15, 102
FokI GGATG 1 cut(s) 314
FriOI GRGCYC 2 cut(s) 27, 67
Fsp4HI GCNGC 2 cut(s) 15, 102
GluI GCNGC 2 cut(s) 15, 102
HgaI GACGC 1 cut(s) 130
Hin1II CATG 1 cut(s) 250
HincII GTYRAC 1 cut(s) 145
HindII GTYRAC 1 cut(s) 145
HinfI GANTC 1 cut(s) 50
Hpy166II GTNNAC 1 cut(s) 145
Hpy188I TCNGA 2 cut(s) 79, 96
Hpy8I GTNNAC 1 cut(s) 145
HpyCH4III ACNGT 1 cut(s) 193
HpyCH4IV ACGT 1 cut(s) 234
HpyCH4V TGCA 5 cut(s) 17, 101, 110, 179, 196
HpyF10VI GCNNNNNNNGC 1 cut(s) 107
HpyF3I CTNAG 4 cut(s) 26, 137, 167, 324
HpySE526I ACGT 1 cut(s) 234
Hsp92II CATG 1 cut(s) 250
LguI GCTCTTC 1 cut(s) 218
LmnI GCTCC 2 cut(s) 62, 118
LpnPI CCDG 4 cut(s) 39, 273, 329, 336
Lsp1109I GCAGC 1 cut(s) 113
LweI GCATC 2 cut(s) 170, 240
MaeII ACGT 1 cut(s) 234
MboII GAAGA 4 cut(s) 25, 92, 235, 365
MfeI CAATTG 1 cut(s) 335
MhlI GDGCHC 2 cut(s) 27, 67
MluCI AATT 3 cut(s) 112, 330, 335
MlyI GAGTC 1 cut(s) 59
MnlI CCTC 1 cut(s) 161
MseI TTAA 2 cut(s) 8, 240
MunI CAATTG 1 cut(s) 335
MwoI GCNNNNNNNGC 1 cut(s) 107
NlaIII CATG 1 cut(s) 250
PciSI GCTCTTC 1 cut(s) 218
PkrI GCNGC 2 cut(s) 16, 103
PleI GAGTC 1 cut(s) 58
PpsI GAGTC 1 cut(s) 58
Ppu21I YACGTR 1 cut(s) 235
Psp124BI GAGCTC 2 cut(s) 27, 67
PstI CTGCAG 1 cut(s) 19
RsaI GTAC 1 cut(s) 233
RsaNI GTAC 1 cut(s) 232
SacI GAGCTC 2 cut(s) 27, 67
SapI GCTCTTC 1 cut(s) 218
SaqAI TTAA 2 cut(s) 8, 240
SatI GCNGC 2 cut(s) 15, 102
SchI GAGTC 1 cut(s) 59
SduI GDGCHC 2 cut(s) 27, 67
SetI ASST 9 cut(s) 16, 27, 67, 216, 230, 237, 299, 330, 360
SfaNI GCATC 2 cut(s) 170, 240
SfcI CTRYAG 1 cut(s) 15
Sse9I AATT 3 cut(s) 112, 330, 335
SsiI CCGC 1 cut(s) 159
SstI GAGCTC 2 cut(s) 27, 67
StyI CCWWGG 1 cut(s) 297
TaaI ACNGT 1 cut(s) 193
TaiI ACGT 1 cut(s) 237
TaqI TCGA 1 cut(s) 276
TasI AATT 3 cut(s) 112, 330, 335
Tru1I TTAA 2 cut(s) 8, 240
Tru9I TTAA 2 cut(s) 8, 240
TscAI CASTG 1 cut(s) 34
TseI GCWGC 2 cut(s) 14, 101
TspDTI ATGAA 1 cut(s) 318
TspGWI ACGGA 1 cut(s) 303
TspRI CASTG 1 cut(s) 34
XapI RAATTY 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.