FvH4_6g14540
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000656
Physical Location & Seq
Reverse (-)
8935577 .. 8936987
1411 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g14540.t1

Sequence Viewer

Length: 846 bp
ATGGAAGGCCATGGAAGTTTATCAAATCATTCTTCAGCTTGGGGTCTGGCAAATTCTATCACCGTTCAAATGACACTGAGAGCTGCAATCGAGCTCAATGTCGTTAACATCATTGCCAAATCAGGTCCGGGAGCTCATCTTACATCAAAAGAAATTGTTTCACAAATCCCCAACACAAATCCAACTTTAGCATCCGAGAATTTGGAGCGAATGCTCAAACTTCTAAGTGAAGCACTTTGCCTAGTGCCGAATGAAGATGGAGTTTCTTTGGCTCCAGTTGTTCTGTGGGGATCTGAAATGCTCGTTATGAACAGCTACTCCATGCTCAAGTACACGGTGCTCGAACCGGGGAGCTCGCCGTTTCTCAAAGGGCATGGAGAGTCCATGTATGAATACATGTCTAAGAAACCTGAGCTGTGCCAATTGTTTGACAAGGTAATGGGAGTAATTTCTTACCTATATTTTGATCATAAGGTGTTTGAGGTTTACAAAGGTTTCGAAGAGGTCAAGGAACTGATGGATGTAGGAGGTGGTGATGGAACTGCGATAGCCAAGATAGTTTCTATGTATCTACATATCCGTGGGATCAACTTCAATTTGCCAAGTGTTATATCTCAAGCTCCTAACTTGCAAGTTGAGAATACCCCCGACATAAAGCTTGTACTCTACATTGACATAGTCATGATGGCCATGTTTCAAGGAGCTAAGGAGCGAACAACAGCTGAGTATGATACTCTAGCCAAATCCGTAGGTTTCGTTGAGACAAAAATCTTCCCACTTCCTCATGGCCGGAGTTATATTCTCGAGTTTCTTAAAGGTGGGAGCGTGGAATCAATCGTTGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00950 ko01110 map00950 map01110
Pfam Domains
Protein Families
Dimerisation Methyltransf_2

Protein Analysis

282

Amino Acids

30.85

Weight (kDa)

5.41

Isoelectric Point (pI)

31.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimerisation PF08100 14 - 76 1.2e-07 O-methyltransferase dimerisation domain
Methyltransf_2 PF00891 106 - 219 2.7e-17 O-methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000656)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g09630 FvH4_3g13140 FvH4_3g13141 FvH4_3g13160 FvH4_3g13170 FvH4_6g14540
malus_domestica MD10G1257600.v1.1
prunus_persica Prupe.4G086200_v2.0.a1
pyrus_communis pycom05g25920 pycom10g21380
rosa_chinensis RchiOBHm_Chr5g0014991 RchiOBHm_Chr5g0046111 RchiOBHm_Chr5g0056661 RchiOBHm_Chr7g0209941 RchiOBHm_Chr7g0211601 RchiOBHm_Chr7g0228691
rosa_laevigata RLG00000002994 RLG00000003075 RLG00000032124 RLG00000032125 RLG00000032158 RLG00000034388 RLG00000034564 RLG00000035118
rosa_multiflora Rmu_sc0003162.1_g000007 Rmu_sc0003162.1_g000010 Rmu_sc0003760.1_g000034 Rmu_sc0004232.1_g000016 Rmu_sc0004232.1_g000017 Rmu_sc0004232.1_g000023 Rmu_sc0004889.1_g000017 Rmu_sc0008669.1_g000001 Rmu_sc0009240.1_g000017 Rmu_sc0009255.1_g000012 Rmu_sc0013112.1_g000007
rosa_roxburghii Rroxscaffold_1G00023690 Rroxscaffold_1G00035370 Rroxscaffold_1G00035380 Rroxscaffold_1G00061590 Rroxscaffold_1G00061940 Rroxscaffold_3G00230880 Rroxscaffold_3G00247690
rosa_rugosa Rorug05G0019200 Rorug05G0022400 Rorug05G0225700 Rorug05G0246400 Rorug05G0301100 Rorug07G0117600 Rorug07G0126200
rosa_samantha Rh5AG114200 Rh5AG114300 Rh5AG117800 Rh5BG111300 Rh5BG115000 Rh5BG314800 Rh5BG383300 Rh5CG126300 Rh5CG359500 Rh5CG406400 Rh5DG110100 Rh5DG110600 Rh5DG114500 Rh5DG396000 Rh5DG396100 Rh7AG251400 Rh7AG403800 Rh7BG246000 Rh7CG268200 Rh7DG258000 Rh7DG266400
rosa_wichuraiana Rw5G009920 Rw5G010150 Rw5G028650 Rw5G034830 Rw7G021330 Rw7G022120 Rw7G033560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 298, 593
AcoI YGGCCR 2 cut(s) 687, 787
AcsI RAATTY 2 cut(s) 52, 199
AcuI CTGAAG 1 cut(s) 18
AfaI GTAC 2 cut(s) 332, 663
AflIII ACRYGT 1 cut(s) 396
AgsI TTSAA 3 cut(s) 68, 595, 698
AjuI GAANNNNNNNTTGG 1 cut(s) 822
AloI GAACNNNNNNTCC 2 cut(s) 302, 334
Alw21I GWGCWC 4 cut(s) 96, 136, 342, 356
Alw26I GTCTC 1 cut(s) 755
AlwI GGATC 2 cut(s) 298, 593
Ama87I CYCGRG 1 cut(s) 803
AoxI GGCC 3 cut(s) 7, 687, 787
ApeKI GCWGC 1 cut(s) 83
ApoI RAATTY 2 cut(s) 52, 199
AspS9I GGNCC 1 cut(s) 125
AsuC2I CCSGG 2 cut(s) 129, 348
AsuHPI GGTGA 2 cut(s) 52, 545
AsuII TTCGAA 1 cut(s) 498
AvaI CYCGRG 1 cut(s) 803
AvaII GGWCC 1 cut(s) 125
BalI TGGCCA 1 cut(s) 689
BanII GRGCYC 3 cut(s) 96, 136, 356
Bbv12I GWGCWC 4 cut(s) 96, 136, 342, 356
BbvI GCAGC 1 cut(s) 70
BccI CCATC 4 cut(s) 251, 511, 530, 679
BceAI ACGGC 1 cut(s) 343
BclI TGATCA 1 cut(s) 466
BcnI CCSGG 2 cut(s) 129, 348
BcoDI GTCTC 1 cut(s) 755
BfaI CTAG 2 cut(s) 242, 737
BisI GCNGC 1 cut(s) 84
BlsI GCNGC 1 cut(s) 85
Bme1390I CCNGG 2 cut(s) 129, 348
Bme18I GGWCC 1 cut(s) 125
BmeT110I CYCGRG 1 cut(s) 803
BmgT120I GGNCC 1 cut(s) 125
BmiI GGNNCC 1 cut(s) 273
BmrFI CCNGG 2 cut(s) 129, 348
BmsI GCATC 1 cut(s) 200
BpmI CTGGAG 1 cut(s) 258
Bpu10I CCTNAGC 2 cut(s) 411, 705
Bpu14I TTCGAA 1 cut(s) 498
BpuEI CTTGAG 2 cut(s) 311, 600
BpuMI CCSGG 2 cut(s) 129, 348
BsaJI CCNNGG 3 cut(s) 10, 347, 580
BsaXI ACNNNNNCTCC 2 cut(s) 302, 332
Bse1I ACTGG 1 cut(s) 275
Bse3DI GCAATG 1 cut(s) 111
BseDI CCNNGG 3 cut(s) 10, 347, 580
BseGI GGATG 2 cut(s) 191, 526
BseMI GCAATG 1 cut(s) 111
BseMII CTCAG 3 cut(s) 68, 402, 714
BseNI ACTGG 1 cut(s) 275
BseXI GCAGC 1 cut(s) 70
BshFI GGCC 3 cut(s) 9, 689, 789
BsiHKAI GWGCWC 4 cut(s) 96, 136, 342, 356
BsiHKCI CYCGRG 1 cut(s) 803
BsiSI CCGG 3 cut(s) 128, 347, 790
BsmAI GTCTC 1 cut(s) 755
BsmI GAATGC 1 cut(s) 216
BsnI GGCC 3 cut(s) 9, 689, 789
BsoBI CYCGRG 1 cut(s) 803
Bsp119I TTCGAA 1 cut(s) 498
Bsp1286I GDGCHC 4 cut(s) 96, 136, 342, 356
Bsp143I GATC 3 cut(s) 290, 466, 585
Bsp19I CCATGG 1 cut(s) 10
BspANI GGCC 3 cut(s) 9, 689, 789
BspCNI CTCAG 3 cut(s) 69, 403, 715
BspHI TCATGA 1 cut(s) 681
BspLI GGNNCC 1 cut(s) 273
BspPI GGATC 2 cut(s) 298, 593
BspT104I TTCGAA 1 cut(s) 498
BsrDI GCAATG 1 cut(s) 111
BsrI ACTGG 1 cut(s) 275
BssECI CCNNGG 3 cut(s) 10, 347, 580
BssMI GATC 3 cut(s) 290, 466, 585
BssT1I CCWWGG 1 cut(s) 10
Bst4CI ACNGT 2 cut(s) 64, 337
Bst6I CTCTTC 1 cut(s) 495
BstBI TTCGAA 1 cut(s) 498
BstC8I GCNNGC 1 cut(s) 356
BstDEI CTNAG 6 cut(s) 77, 224, 402, 411, 705, 723
BstDSI CCRYGG 2 cut(s) 10, 580
BstF5I GGATG 2 cut(s) 191, 526
BstKTI GATC 3 cut(s) 293, 469, 588
BstMAI GTCTC 1 cut(s) 755
BstMBI GATC 3 cut(s) 290, 466, 585
BstNSI RCATGY 1 cut(s) 400
BstSCI CCNGG 2 cut(s) 127, 346
BstV1I GCAGC 1 cut(s) 70
BstX2I RGATCY 1 cut(s) 290
BstYI RGATCY 1 cut(s) 290
BsuRI GGCC 3 cut(s) 9, 689, 789
BtgI CCRYGG 2 cut(s) 10, 580
BtsCI GGATG 2 cut(s) 191, 526
BtsIMutI CAGTG 1 cut(s) 74
Cac8I GCNNGC 1 cut(s) 356
CciI TCATGA 1 cut(s) 681
Cfr13I GGNCC 1 cut(s) 125
Csp6I GTAC 2 cut(s) 331, 662
CviAII CATG 8 cut(s) 11, 322, 374, 385, 397, 682, 691, 785
CviQI GTAC 2 cut(s) 331, 662
DdeI CTNAG 6 cut(s) 77, 224, 402, 411, 705, 723
DpnI GATC 3 cut(s) 292, 468, 587
DpnII GATC 3 cut(s) 290, 466, 585
EaeI YGGCCR 2 cut(s) 687, 787
Eam1104I CTCTTC 1 cut(s) 495
EarI CTCTTC 1 cut(s) 495
Ecl136II GAGCTC 3 cut(s) 94, 134, 354
Eco130I CCWWGG 1 cut(s) 10
Eco24I GRGCYC 3 cut(s) 96, 136, 356
Eco47I GGWCC 1 cut(s) 125
Eco53kI GAGCTC 3 cut(s) 94, 134, 354
Eco57I CTGAAG 1 cut(s) 18
Eco88I CYCGRG 1 cut(s) 803
EcoICRI GAGCTC 3 cut(s) 94, 134, 354
EcoT14I CCWWGG 1 cut(s) 10
EcoT38I GRGCYC 3 cut(s) 96, 136, 356
ErhI CCWWGG 1 cut(s) 10
FaeI CATG 8 cut(s) 14, 325, 377, 388, 400, 685, 694, 788
FatI CATG 8 cut(s) 10, 321, 373, 384, 396, 681, 690, 784
FbaI TGATCA 1 cut(s) 466
Fnu4HI GCNGC 1 cut(s) 84
FokI GGATG 2 cut(s) 178, 533
FriOI GRGCYC 3 cut(s) 96, 136, 356
Fsp4HI GCNGC 1 cut(s) 84
FspBI CTAG 2 cut(s) 242, 737
GluI GCNGC 1 cut(s) 84
GsuI CTGGAG 1 cut(s) 258
HaeIII GGCC 3 cut(s) 9, 689, 789
HapII CCGG 3 cut(s) 128, 347, 790
Hin1II CATG 8 cut(s) 14, 325, 377, 388, 400, 685, 694, 788
HincII GTYRAC 1 cut(s) 106
HindII GTYRAC 1 cut(s) 106
HindIII AAGCTT 1 cut(s) 656
HinfI GANTC 2 cut(s) 380, 830
HpaI GTTAAC 1 cut(s) 106
HpaII CCGG 3 cut(s) 128, 347, 790
HphI GGTGA 2 cut(s) 52, 545
Hpy166II GTNNAC 3 cut(s) 106, 333, 487
Hpy188I TCNGA 2 cut(s) 196, 295
Hpy188III TCNNGA 2 cut(s) 682, 803
Hpy8I GTNNAC 3 cut(s) 106, 333, 487
HpyCH4III ACNGT 2 cut(s) 64, 337
HpyCH4V TGCA 2 cut(s) 86, 631
HpyF3I CTNAG 6 cut(s) 77, 224, 402, 411, 705, 723
Hsp92II CATG 8 cut(s) 14, 325, 377, 388, 400, 685, 694, 788
Ksp22I TGATCA 1 cut(s) 466
KspAI GTTAAC 1 cut(s) 106
Kzo9I GATC 3 cut(s) 290, 466, 585
LmnI GCTCC 8 cut(s) 131, 205, 277, 351, 625, 701, 709, 822
LpnPI CCDG 7 cut(s) 32, 108, 141, 288, 360, 423, 803
Lsp1109I GCAGC 1 cut(s) 70
LweI GCATC 1 cut(s) 200
MaeI CTAG 2 cut(s) 242, 737
MalI GATC 3 cut(s) 292, 468, 587
MboI GATC 3 cut(s) 290, 466, 585
MboII GAAGA 4 cut(s) 24, 266, 512, 763
MfeI CAATTG 1 cut(s) 422
MflI RGATCY 1 cut(s) 290
MhlI GDGCHC 4 cut(s) 96, 136, 342, 356
MlsI TGGCCA 1 cut(s) 689
MluCI AATT 6 cut(s) 52, 153, 199, 422, 447, 595
MluNI TGGCCA 1 cut(s) 689
MlyI GAGTC 1 cut(s) 389
MmeI TCCRAC 2 cut(s) 206, 820
MnlI CCTC 4 cut(s) 475, 496, 521, 792
Mox20I TGGCCA 1 cut(s) 689
MscI TGGCCA 1 cut(s) 689
MseI TTAA 2 cut(s) 105, 813
MslI CAYNNNNRTG 2 cut(s) 579, 680
Msp20I TGGCCA 1 cut(s) 689
MspA1I CMGCKG 1 cut(s) 722
MspI CCGG 3 cut(s) 128, 347, 790
MspR9I CCNGG 2 cut(s) 129, 348
MunI CAATTG 1 cut(s) 422
Mva1269I GAATGC 1 cut(s) 216
NciI CCSGG 2 cut(s) 129, 348
NcoI CCATGG 1 cut(s) 10
NdeII GATC 3 cut(s) 290, 466, 585
NlaIII CATG 8 cut(s) 14, 325, 377, 388, 400, 685, 694, 788
NlaIV GGNNCC 1 cut(s) 273
NspI RCATGY 1 cut(s) 400
NspV TTCGAA 1 cut(s) 498
PaeR7I CTCGAG 1 cut(s) 803
PagI TCATGA 1 cut(s) 681
PciI ACATGT 1 cut(s) 396
PctI GAATGC 1 cut(s) 216
PfeI GAWTC 1 cut(s) 830
PflFI GACNNNGTC 1 cut(s) 677
PfoI TCCNGGA 1 cut(s) 127
PkrI GCNGC 1 cut(s) 85
PleI GAGTC 1 cut(s) 388
PpsI GAGTC 1 cut(s) 388
PscI ACATGT 1 cut(s) 396
Psp124BI GAGCTC 3 cut(s) 96, 136, 356
PspN4I GGNNCC 1 cut(s) 273
PspPI GGNCC 1 cut(s) 125
PsuI RGATCY 1 cut(s) 290
PsyI GACNNNGTC 1 cut(s) 677
PvuII CAGCTG 1 cut(s) 722
RsaI GTAC 2 cut(s) 332, 663
RsaNI GTAC 2 cut(s) 331, 662
RseI CAYNNNNRTG 2 cut(s) 579, 680
SacI GAGCTC 3 cut(s) 96, 136, 356
SaqAI TTAA 2 cut(s) 105, 813
SatI GCNGC 1 cut(s) 84
Sau3AI GATC 3 cut(s) 290, 466, 585
Sau96I GGNCC 1 cut(s) 125
SchI GAGTC 1 cut(s) 389
ScrFI CCNGG 2 cut(s) 129, 348
SduI GDGCHC 4 cut(s) 96, 136, 342, 356
SfaNI GCATC 1 cut(s) 200
Sfr274I CTCGAG 1 cut(s) 803
SfuI TTCGAA 1 cut(s) 498
SinI GGWCC 1 cut(s) 125
SlaI CTCGAG 1 cut(s) 803
SmiMI CAYNNNNRTG 2 cut(s) 579, 680
SmlI CTYRAG 3 cut(s) 326, 615, 803
SmoI CTYRAG 3 cut(s) 326, 615, 803
Sse9I AATT 6 cut(s) 52, 153, 199, 422, 447, 595
SspMI CTAG 2 cut(s) 242, 737
SstI GAGCTC 3 cut(s) 96, 136, 356
StyD4I CCNGG 2 cut(s) 127, 346
StyI CCWWGG 1 cut(s) 10
TaaI ACNGT 2 cut(s) 64, 337
TaqI TCGA 4 cut(s) 90, 342, 498, 804
TasI AATT 6 cut(s) 52, 153, 199, 422, 447, 595
TatI WGTACW 2 cut(s) 330, 661
TfiI GAWTC 1 cut(s) 830
Tru1I TTAA 2 cut(s) 105, 813
Tru9I TTAA 2 cut(s) 105, 813
TscAI CASTG 1 cut(s) 81
TseI GCWGC 1 cut(s) 83
TspDTI ATGAA 3 cut(s) 267, 323, 405
TspGWI ACGGA 2 cut(s) 569, 736
TspRI CASTG 1 cut(s) 81
Tth111I GACNNNGTC 1 cut(s) 677
VpaK11BI GGWCC 1 cut(s) 125
XapI RAATTY 2 cut(s) 52, 199
XceI RCATGY 1 cut(s) 400
XcmI CCANNNNNNNNNTGG 1 cut(s) 282
XhoI CTCGAG 1 cut(s) 803
XspI CTAG 2 cut(s) 242, 737
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.