FvH4_3g13140
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000656
Physical Location & Seq
Reverse (-)
7846005 .. 7849020
3016 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g13140.t1

Sequence Viewer

Length: 1083 bp
ATGGAAAGCCATGGAAGTTTAGAGAATCATATCTCTGCTTGGGGTCTGTCAACTTCCGTCACCATTCAAATGACTCTAAGAGCTGCAATAGAGCTCGATGTGTTCAACATCATTGCCAAAGCAGGGTCTGGAGCTCATCTTACATCAAAACAAATTGTTTCCCAAATCCCAACCACAAATCCAAAGGCAGCAGTTGAAAACTTGGAGAGAATGCTAAGGTATCTCAGTGTCCACTCCCTACTATCAACATCTCAAACACCAAACCCTAATGACCCGACCATCAAAGACACCAGCTACGGGCTTACGGAGGATACTCTTTGCCTAGTCCCAAATGAAGATGGAGTTTCTTTTGCCCCGTTTTTGATTTGGAAAACTGAAATGCACTCTTTGAAGAGCTTGTCCATGCTAAAATATACTGTGCTTGAACCGGAGAGTAGTCCTTTCCTGAAAGCTCATGGGGAGACCCCCATATATGAATACATGTCCAAGAAGCCAGGGTTGCCTTCATTGTTTGATGAAGTAATGAAGCTTCACTCTTACATATGCTACGAACGAAAGGTGTTCGAAGAGTACAAAGGTTTTGAAGAGGTGAAAGAGCTTATGGACGTAGGAGGGGGAGATGGAAGTGCCATTGCCAAAATAGTGTCAGTATATCCTCATATTCAGGGTATCAACTTCAATTTGCCTAGTGGTGTTGCTCGTGCTCCTGAATATCCAGGTGTAAAGCATGTAAATGGGGATATGTTTGAGACAATACCATATACACAGGCCATTATGCTCAAGTTGATACTCCATAATTGGGACGATGATCACTGCAAGAAGATATTGAGAAACTGTTCGAATGCGTTACCAAACAATGGAAAGGTTATAGTCGTTGAATATTGTGTGTTGCCAGAAGTAATTGAGAATACCCTAGAAACAAAAACCATGCTACTACCCGCTGACATTGCGATGATGACCTTATGCAACGGCAAGGAGCGAACTATAAGTGAATATGATGCCTTGGCCAAATCTGTCGGTTTCGTCCAGACAAAGGCTTTTCCGATTTGCCATGGAACTTATGTCATTGAGTTTCTGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00950 ko01110 map00950 map01110
Pfam Domains
Protein Families
Dimerisation Methyltransf_2

Protein Analysis

361

Amino Acids

40.04

Weight (kDa)

5.66

Isoelectric Point (pI)

33.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimerisation PF08100 15 - 103 7.8e-12 O-methyltransferase dimerisation domain
Methyltransf_2 PF00891 136 - 341 8e-51 O-methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000656)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g09630 FvH4_3g13140 FvH4_3g13141 FvH4_3g13160 FvH4_3g13170 FvH4_6g14540
malus_domestica MD10G1257600.v1.1
prunus_persica Prupe.4G086200_v2.0.a1
pyrus_communis pycom05g25920 pycom10g21380
rosa_chinensis RchiOBHm_Chr5g0014991 RchiOBHm_Chr5g0046111 RchiOBHm_Chr5g0056661 RchiOBHm_Chr7g0209941 RchiOBHm_Chr7g0211601 RchiOBHm_Chr7g0228691
rosa_laevigata RLG00000002994 RLG00000003075 RLG00000032124 RLG00000032125 RLG00000032158 RLG00000034388 RLG00000034564 RLG00000035118
rosa_multiflora Rmu_sc0003162.1_g000007 Rmu_sc0003162.1_g000010 Rmu_sc0003760.1_g000034 Rmu_sc0004232.1_g000016 Rmu_sc0004232.1_g000017 Rmu_sc0004232.1_g000023 Rmu_sc0004889.1_g000017 Rmu_sc0008669.1_g000001 Rmu_sc0009240.1_g000017 Rmu_sc0009255.1_g000012 Rmu_sc0013112.1_g000007
rosa_roxburghii Rroxscaffold_1G00023690 Rroxscaffold_1G00035370 Rroxscaffold_1G00035380 Rroxscaffold_1G00061590 Rroxscaffold_1G00061940 Rroxscaffold_3G00230880 Rroxscaffold_3G00247690
rosa_rugosa Rorug05G0019200 Rorug05G0022400 Rorug05G0225700 Rorug05G0246400 Rorug05G0301100 Rorug07G0117600 Rorug07G0126200
rosa_samantha Rh5AG114200 Rh5AG114300 Rh5AG117800 Rh5BG111300 Rh5BG115000 Rh5BG314800 Rh5BG383300 Rh5CG126300 Rh5CG359500 Rh5CG406400 Rh5DG110100 Rh5DG110600 Rh5DG114500 Rh5DG396000 Rh5DG396100 Rh7AG251400 Rh7AG403800 Rh7BG246000 Rh7CG268200 Rh7DG258000 Rh7DG266400
rosa_wichuraiana Rw5G009920 Rw5G010150 Rw5G028650 Rw5G034830 Rw7G021330 Rw7G022120 Rw7G033560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 857
AciI CCGC 1 cut(s) 939
AcoI YGGCCR 1 cut(s) 1005
AfaI GTAC 1 cut(s) 572
AfiI CCNNNNNNNGG 5 cut(s) 123, 297, 799, 857, 1033
AflIII ACRYGT 1 cut(s) 480
AgsI TTSAA 8 cut(s) 68, 106, 197, 391, 425, 584, 679, 878
AjnI CCWGG 2 cut(s) 493, 715
AluBI AGCT 8 cut(s) 83, 94, 134, 294, 396, 452, 529, 598
AluI AGCT 8 cut(s) 83, 94, 134, 294, 396, 452, 529, 598
Alw21I GWGCWC 3 cut(s) 96, 136, 706
Alw26I GTCTC 2 cut(s) 455, 743
AlwNI CAGNNNCTG 1 cut(s) 128
AoxI GGCC 2 cut(s) 768, 1005
ApeKI GCWGC 2 cut(s) 83, 188
Asp700I GAANNNNTTC 1 cut(s) 835
AsuHPI GGTGA 2 cut(s) 52, 601
AsuII TTCGAA 2 cut(s) 564, 839
BalI TGGCCA 1 cut(s) 1007
BanII GRGCYC 2 cut(s) 96, 136
BarI GAAGNNNNNNTAC 2 cut(s) 513, 545
BauI CACGAG 1 cut(s) 699
Bbv12I GWGCWC 3 cut(s) 96, 136, 706
BbvI GCAGC 2 cut(s) 70, 200
BccI CCATC 3 cut(s) 287, 332, 614
BceAI ACGGC 1 cut(s) 985
BciT130I CCWGG 2 cut(s) 495, 717
BciVI GTATCC 1 cut(s) 304
BclI TGATCA 1 cut(s) 808
BcoDI GTCTC 2 cut(s) 455, 743
BfaI CTAG 3 cut(s) 323, 687, 914
BfuI GTATCC 1 cut(s) 304
BisI GCNGC 2 cut(s) 84, 189
BlsI GCNGC 2 cut(s) 85, 190
Bme1390I CCNGG 2 cut(s) 495, 717
BmrFI CCNGG 2 cut(s) 495, 717
BmsI GCATC 1 cut(s) 988
BpmI CTGGAG 1 cut(s) 150
Bpu10I CCTNAGC 1 cut(s) 215
Bpu14I TTCGAA 2 cut(s) 564, 839
BpuEI CTTGAG 1 cut(s) 764
BsaI GGTCTC 1 cut(s) 455
BsaJI CCNNGG 4 cut(s) 10, 494, 1002, 1051
BsaWI WCCGGW 1 cut(s) 427
Bsc4I CCNNNNNNNGG 5 cut(s) 123, 297, 799, 857, 1033
Bse3DI GCAATG 3 cut(s) 111, 630, 945
BseBI CCWGG 2 cut(s) 495, 717
BseDI CCNNGG 4 cut(s) 10, 494, 1002, 1051
BseLI CCNNNNNNNGG 5 cut(s) 123, 297, 799, 857, 1033
BseMI GCAATG 3 cut(s) 111, 630, 945
BseMII CTCAG 1 cut(s) 238
BseXI GCAGC 2 cut(s) 70, 200
BshFI GGCC 2 cut(s) 770, 1007
BsiHKAI GWGCWC 3 cut(s) 96, 136, 706
BsiSI CCGG 1 cut(s) 428
BslFI GGGAC 2 cut(s) 311, 815
BslI CCNNNNNNNGG 5 cut(s) 123, 297, 799, 857, 1033
BsmAI GTCTC 2 cut(s) 455, 743
BsmFI GGGAC 2 cut(s) 311, 815
BsmI GAATGC 2 cut(s) 216, 847
BsnI GGCC 2 cut(s) 770, 1007
Bso31I GGTCTC 1 cut(s) 455
Bsp119I TTCGAA 2 cut(s) 564, 839
Bsp1286I GDGCHC 3 cut(s) 96, 136, 706
Bsp143I GATC 1 cut(s) 808
Bsp19I CCATGG 2 cut(s) 10, 1051
BspACI CCGC 1 cut(s) 939
BspANI GGCC 2 cut(s) 770, 1007
BspCNI CTCAG 1 cut(s) 237
BspQI GCTCTTC 1 cut(s) 386
BspT104I TTCGAA 2 cut(s) 564, 839
BspTNI GGTCTC 1 cut(s) 455
BsrDI GCAATG 3 cut(s) 111, 630, 945
BssECI CCNNGG 4 cut(s) 10, 494, 1002, 1051
BssMI GATC 1 cut(s) 808
BssSI CACGAG 1 cut(s) 699
BssT1I CCWWGG 3 cut(s) 10, 1002, 1051
Bst2BI CACGAG 1 cut(s) 699
Bst2UI CCWGG 2 cut(s) 495, 717
Bst4CI ACNGT 2 cut(s) 418, 836
Bst6I CTCTTC 3 cut(s) 386, 561, 579
BstBI TTCGAA 2 cut(s) 564, 839
BstDEI CTNAG 3 cut(s) 77, 215, 224
BstDSI CCRYGG 2 cut(s) 10, 1051
BstKTI GATC 1 cut(s) 811
BstMAI GTCTC 2 cut(s) 455, 743
BstMBI GATC 1 cut(s) 808
BstMWI GCNNNNNNNGC 2 cut(s) 499, 947
BstNI CCWGG 2 cut(s) 495, 717
BstNSI RCATGY 2 cut(s) 484, 731
BstSCI CCNGG 2 cut(s) 493, 715
BstV1I GCAGC 2 cut(s) 70, 200
BsuI GTATCC 1 cut(s) 304
BsuRI GGCC 2 cut(s) 770, 1007
BtgI CCRYGG 2 cut(s) 10, 1051
BtgZI GCGATG 1 cut(s) 965
BtsI GCAGTG 1 cut(s) 811
BtsIMutI CAGTG 2 cut(s) 232, 811
CaiI CAGNNNCTG 1 cut(s) 128
Csp6I GTAC 1 cut(s) 571
CviAII CATG 7 cut(s) 11, 403, 455, 481, 728, 928, 1052
CviQI GTAC 1 cut(s) 571
DdeI CTNAG 3 cut(s) 77, 215, 224
DpnI GATC 1 cut(s) 810
DpnII GATC 1 cut(s) 808
EaeI YGGCCR 1 cut(s) 1005
Eam1104I CTCTTC 3 cut(s) 386, 561, 579
EarI CTCTTC 3 cut(s) 386, 561, 579
Ecl136II GAGCTC 2 cut(s) 94, 134
Eco130I CCWWGG 3 cut(s) 10, 1002, 1051
Eco24I GRGCYC 2 cut(s) 96, 136
Eco31I GGTCTC 1 cut(s) 455
Eco53kI GAGCTC 2 cut(s) 94, 134
EcoICRI GAGCTC 2 cut(s) 94, 134
EcoRII CCWGG 2 cut(s) 493, 715
EcoT14I CCWWGG 3 cut(s) 10, 1002, 1051
EcoT38I GRGCYC 2 cut(s) 96, 136
ErhI CCWWGG 3 cut(s) 10, 1002, 1051
FaeI CATG 7 cut(s) 14, 406, 458, 484, 731, 931, 1055
FaqI GGGAC 2 cut(s) 311, 815
FatI CATG 7 cut(s) 10, 402, 454, 480, 727, 927, 1051
FauI CCCGC 1 cut(s) 946
FauNDI CATATG 1 cut(s) 542
FbaI TGATCA 1 cut(s) 808
Fnu4HI GCNGC 2 cut(s) 84, 189
FriOI GRGCYC 2 cut(s) 96, 136
Fsp4HI GCNGC 2 cut(s) 84, 189
FspBI CTAG 3 cut(s) 323, 687, 914
GluI GCNGC 2 cut(s) 84, 189
GsuI CTGGAG 1 cut(s) 150
HaeIII GGCC 2 cut(s) 770, 1007
HapII CCGG 1 cut(s) 428
Hin1II CATG 7 cut(s) 14, 406, 458, 484, 731, 931, 1055
HincII GTYRAC 1 cut(s) 51
HindII GTYRAC 1 cut(s) 51
HindIII AAGCTT 1 cut(s) 527
HinfI GANTC 2 cut(s) 25, 73
HpaII CCGG 1 cut(s) 428
HphI GGTGA 2 cut(s) 52, 601
Hpy166II GTNNAC 2 cut(s) 51, 232
Hpy188I TCNGA 2 cut(s) 1044, 1077
Hpy188III TCNNGA 4 cut(s) 129, 445, 707, 1027
Hpy8I GTNNAC 2 cut(s) 51, 232
HpyAV CCTTC 1 cut(s) 513
HpyCH4III ACNGT 2 cut(s) 418, 836
HpyCH4IV ACGT 1 cut(s) 606
HpyCH4V TGCA 4 cut(s) 86, 382, 816, 966
HpyF10VI GCNNNNNNNGC 2 cut(s) 499, 947
HpyF3I CTNAG 3 cut(s) 77, 215, 224
HpySE526I ACGT 1 cut(s) 606
Hsp92II CATG 7 cut(s) 14, 406, 458, 484, 731, 931, 1055
Ksp22I TGATCA 1 cut(s) 808
Kzo9I GATC 1 cut(s) 808
LguI GCTCTTC 1 cut(s) 386
LmnI GCTCC 3 cut(s) 131, 709, 976
Lsp1109I GCAGC 2 cut(s) 70, 200
LweI GCATC 1 cut(s) 988
MaeI CTAG 3 cut(s) 323, 687, 914
MaeII ACGT 1 cut(s) 606
MaeIII GTNAC 2 cut(s) 58, 846
MalI GATC 1 cut(s) 810
MboI GATC 1 cut(s) 808
MboII GAAGA 5 cut(s) 347, 403, 578, 596, 832
MhlI GDGCHC 3 cut(s) 96, 136, 706
MlsI TGGCCA 1 cut(s) 1007
MluCI AATT 4 cut(s) 153, 679, 796, 900
MluNI TGGCCA 1 cut(s) 1007
MlyI GAGTC 1 cut(s) 67
MnlI CCTC 4 cut(s) 301, 580, 605, 666
Mox20I TGGCCA 1 cut(s) 1007
MroXI GAANNNNTTC 1 cut(s) 835
MscI TGGCCA 1 cut(s) 1007
MslI CAYNNNNRTG 3 cut(s) 68, 732, 950
Msp20I TGGCCA 1 cut(s) 1007
MspA1I CMGCKG 1 cut(s) 941
MspI CCGG 1 cut(s) 428
MspR9I CCNGG 2 cut(s) 495, 717
Mva1269I GAATGC 2 cut(s) 216, 847
MvaI CCWGG 2 cut(s) 495, 717
MwoI GCNNNNNNNGC 2 cut(s) 499, 947
NcoI CCATGG 2 cut(s) 10, 1051
NdeI CATATG 1 cut(s) 542
NdeII GATC 1 cut(s) 808
NlaIII CATG 7 cut(s) 14, 406, 458, 484, 731, 931, 1055
NmuCI GTSAC 1 cut(s) 58
NspI RCATGY 2 cut(s) 484, 731
NspV TTCGAA 2 cut(s) 564, 839
PciI ACATGT 1 cut(s) 480
PciSI GCTCTTC 1 cut(s) 386
PctI GAATGC 2 cut(s) 216, 847
PdmI GAANNNNTTC 1 cut(s) 835
PfeI GAWTC 1 cut(s) 25
PflMI CCANNNNNTGG 1 cut(s) 857
PkrI GCNGC 2 cut(s) 85, 190
PleI GAGTC 1 cut(s) 67
PpsI GAGTC 1 cut(s) 67
PscI ACATGT 1 cut(s) 480
Psp124BI GAGCTC 2 cut(s) 96, 136
Psp6I CCWGG 2 cut(s) 493, 715
PspGI CCWGG 2 cut(s) 493, 715
PstNI CAGNNNCTG 1 cut(s) 128
RsaI GTAC 1 cut(s) 572
RsaNI GTAC 1 cut(s) 571
RseI CAYNNNNRTG 3 cut(s) 68, 732, 950
SacI GAGCTC 2 cut(s) 96, 136
SapI GCTCTTC 1 cut(s) 386
SatI GCNGC 2 cut(s) 84, 189
Sau3AI GATC 1 cut(s) 808
SchI GAGTC 1 cut(s) 67
ScrFI CCNGG 2 cut(s) 495, 717
SduI GDGCHC 3 cut(s) 96, 136, 706
SfaNI GCATC 1 cut(s) 988
SfuI TTCGAA 2 cut(s) 564, 839
SmiMI CAYNNNNRTG 3 cut(s) 68, 732, 950
SmlI CTYRAG 1 cut(s) 779
SmoI CTYRAG 1 cut(s) 779
Sse9I AATT 4 cut(s) 153, 679, 796, 900
SsiI CCGC 1 cut(s) 939
SspI AATATT 1 cut(s) 881
SspMI CTAG 3 cut(s) 323, 687, 914
SstI GAGCTC 2 cut(s) 96, 136
StyD4I CCNGG 2 cut(s) 493, 715
StyI CCWWGG 3 cut(s) 10, 1002, 1051
TaaI ACNGT 2 cut(s) 418, 836
TaiI ACGT 1 cut(s) 609
TaqI TCGA 3 cut(s) 96, 564, 839
TasI AATT 4 cut(s) 153, 679, 796, 900
TatI WGTACW 1 cut(s) 570
TfiI GAWTC 1 cut(s) 25
TscAI CASTG 2 cut(s) 232, 818
TseFI GTSAC 1 cut(s) 58
TseI GCWGC 2 cut(s) 83, 188
Tsp45I GTSAC 1 cut(s) 58
TspDTI ATGAA 5 cut(s) 348, 489, 495, 531, 539
TspGWI ACGGA 2 cut(s) 46, 320
TspRI CASTG 2 cut(s) 232, 818
Van91I CCANNNNNTGG 1 cut(s) 857
XceI RCATGY 2 cut(s) 484, 731
XmnI GAANNNNTTC 1 cut(s) 835
XspI CTAG 3 cut(s) 323, 687, 914
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.