FvH4_3g13170
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000656
Physical Location & Seq
Reverse (-)
7857277 .. 7857594
318 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g13170.t1

Sequence Viewer

Length: 318 bp
ATGGAAAGCCATGGAAGTTTAGAGAATCATATTTCTGCTTGGGGTGTGTCAACTTCACTCACCATTCAAATGACACTAAGAGCTGCAGTAGAGCTCGATGTGTTCAACATCATTGCCAAAGCAGGGTCTGGAGCTCATCTTACATCAAAACAAATTGTTTCCCAAATCCCAACCACAAATCCAAACTCAGCAGTTGAAAACTTGGAGAGAATTCTAAGGTTTCTCAGTGTCCATTCCTACTATCAACATCTCAAACACCAAACCCTACGATCCGACCATCAAAGACACCAGCTACGGGAAAGGATACCCTTTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00950 ko01110 map00950 map01110
Pfam Domains
Protein Families
Dimerisation Methyltransf_2

Protein Analysis

106

Amino Acids

11.87

Weight (kDa)

9.39

Isoelectric Point (pI)

34.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimerisation PF08100 17 - 77 1.9e-09 O-methyltransferase dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000656)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g09630 FvH4_3g13140 FvH4_3g13141 FvH4_3g13160 FvH4_3g13170 FvH4_6g14540
malus_domestica MD10G1257600.v1.1
prunus_persica Prupe.4G086200_v2.0.a1
pyrus_communis pycom05g25920 pycom10g21380
rosa_chinensis RchiOBHm_Chr5g0014991 RchiOBHm_Chr5g0046111 RchiOBHm_Chr5g0056661 RchiOBHm_Chr7g0209941 RchiOBHm_Chr7g0211601 RchiOBHm_Chr7g0228691
rosa_laevigata RLG00000002994 RLG00000003075 RLG00000032124 RLG00000032125 RLG00000032158 RLG00000034388 RLG00000034564 RLG00000035118
rosa_multiflora Rmu_sc0003162.1_g000007 Rmu_sc0003162.1_g000010 Rmu_sc0003760.1_g000034 Rmu_sc0004232.1_g000016 Rmu_sc0004232.1_g000017 Rmu_sc0004232.1_g000023 Rmu_sc0004889.1_g000017 Rmu_sc0008669.1_g000001 Rmu_sc0009240.1_g000017 Rmu_sc0009255.1_g000012 Rmu_sc0013112.1_g000007
rosa_roxburghii Rroxscaffold_1G00023690 Rroxscaffold_1G00035370 Rroxscaffold_1G00035380 Rroxscaffold_1G00061590 Rroxscaffold_1G00061940 Rroxscaffold_3G00230880 Rroxscaffold_3G00247690
rosa_rugosa Rorug05G0019200 Rorug05G0022400 Rorug05G0225700 Rorug05G0246400 Rorug05G0301100 Rorug07G0117600 Rorug07G0126200
rosa_samantha Rh5AG114200 Rh5AG114300 Rh5AG117800 Rh5BG111300 Rh5BG115000 Rh5BG314800 Rh5BG383300 Rh5CG126300 Rh5CG359500 Rh5CG406400 Rh5DG110100 Rh5DG110600 Rh5DG114500 Rh5DG396000 Rh5DG396100 Rh7AG251400 Rh7AG403800 Rh7BG246000 Rh7CG268200 Rh7DG258000 Rh7DG266400
rosa_wichuraiana Rw5G009920 Rw5G010150 Rw5G028650 Rw5G034830 Rw7G021330 Rw7G022120 Rw7G033560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 264
AcsI RAATTY 1 cut(s) 210
AfiI CCNNNNNNNGG 2 cut(s) 123, 295
AgsI TTSAA 3 cut(s) 68, 106, 197
AluBI AGCT 4 cut(s) 83, 94, 134, 292
AluI AGCT 4 cut(s) 83, 94, 134, 292
Alw21I GWGCWC 2 cut(s) 96, 136
AlwI GGATC 1 cut(s) 264
AlwNI CAGNNNCTG 1 cut(s) 128
ApeKI GCWGC 1 cut(s) 83
ApoI RAATTY 1 cut(s) 210
AsuHPI GGTGA 1 cut(s) 52
BanII GRGCYC 2 cut(s) 96, 136
Bbv12I GWGCWC 2 cut(s) 96, 136
BbvI GCAGC 1 cut(s) 70
BccI CCATC 1 cut(s) 285
BciVI GTATCC 1 cut(s) 297
BfaI CTAG 1 cut(s) 316
BfmI CTRYAG 1 cut(s) 84
BfuI GTATCC 1 cut(s) 297
BisI GCNGC 1 cut(s) 84
BlsI GCNGC 1 cut(s) 85
BpmI CTGGAG 1 cut(s) 150
BsaJI CCNNGG 1 cut(s) 10
Bsc4I CCNNNNNNNGG 2 cut(s) 123, 295
Bse3DI GCAATG 1 cut(s) 111
BseDI CCNNGG 1 cut(s) 10
BseLI CCNNNNNNNGG 2 cut(s) 123, 295
BseMI GCAATG 1 cut(s) 111
BseMII CTCAG 2 cut(s) 201, 238
BseXI GCAGC 1 cut(s) 70
BsiHKAI GWGCWC 2 cut(s) 96, 136
BslI CCNNNNNNNGG 2 cut(s) 123, 295
Bsp1286I GDGCHC 2 cut(s) 96, 136
Bsp143I GATC 1 cut(s) 269
Bsp19I CCATGG 1 cut(s) 10
BspCNI CTCAG 2 cut(s) 200, 237
BspMAI CTGCAG 1 cut(s) 88
BspPI GGATC 1 cut(s) 264
BsrDI GCAATG 1 cut(s) 111
BssECI CCNNGG 1 cut(s) 10
BssMI GATC 1 cut(s) 269
BssT1I CCWWGG 1 cut(s) 10
BstDEI CTNAG 4 cut(s) 77, 187, 215, 224
BstDSI CCRYGG 1 cut(s) 10
BstKTI GATC 1 cut(s) 272
BstMBI GATC 1 cut(s) 269
BstSFI CTRYAG 1 cut(s) 84
BstV1I GCAGC 1 cut(s) 70
BsuI GTATCC 1 cut(s) 297
BtgI CCRYGG 1 cut(s) 10
BtsIMutI CAGTG 1 cut(s) 232
CaiI CAGNNNCTG 1 cut(s) 128
CviAII CATG 1 cut(s) 11
CviJI RGCY 5 cut(s) 9, 83, 94, 134, 292
CviKI_1 RGCY 5 cut(s) 9, 83, 94, 134, 292
DdeI CTNAG 4 cut(s) 77, 187, 215, 224
DpnI GATC 1 cut(s) 271
DpnII GATC 1 cut(s) 269
Ecl136II GAGCTC 2 cut(s) 94, 134
Eco130I CCWWGG 1 cut(s) 10
Eco24I GRGCYC 2 cut(s) 96, 136
Eco53kI GAGCTC 2 cut(s) 94, 134
EcoICRI GAGCTC 2 cut(s) 94, 134
EcoRI GAATTC 1 cut(s) 210
EcoT14I CCWWGG 1 cut(s) 10
EcoT38I GRGCYC 2 cut(s) 96, 136
ErhI CCWWGG 1 cut(s) 10
FaeI CATG 1 cut(s) 14
FaiI YATR 2 cut(s) 12, 30
FatI CATG 1 cut(s) 10
Fnu4HI GCNGC 1 cut(s) 84
FriOI GRGCYC 2 cut(s) 96, 136
Fsp4HI GCNGC 1 cut(s) 84
FspBI CTAG 1 cut(s) 316
GluI GCNGC 1 cut(s) 84
GsuI CTGGAG 1 cut(s) 150
Hin1II CATG 1 cut(s) 14
HincII GTYRAC 1 cut(s) 51
HindII GTYRAC 1 cut(s) 51
HinfI GANTC 1 cut(s) 25
HphI GGTGA 1 cut(s) 52
Hpy166II GTNNAC 1 cut(s) 51
Hpy188I TCNGA 1 cut(s) 274
Hpy188III TCNNGA 1 cut(s) 129
Hpy8I GTNNAC 1 cut(s) 51
HpyCH4V TGCA 1 cut(s) 86
HpyF3I CTNAG 4 cut(s) 77, 187, 215, 224
Hsp92II CATG 1 cut(s) 14
Kzo9I GATC 1 cut(s) 269
LmnI GCTCC 1 cut(s) 131
LpnPI CCDG 3 cut(s) 108, 114, 302
Lsp1109I GCAGC 1 cut(s) 70
MaeI CTAG 1 cut(s) 316
MalI GATC 1 cut(s) 271
MboI GATC 1 cut(s) 269
MhlI GDGCHC 2 cut(s) 96, 136
MluCI AATT 2 cut(s) 153, 210
MmeI TCCRAC 1 cut(s) 297
MslI CAYNNNNRTG 1 cut(s) 68
NcoI CCATGG 1 cut(s) 10
NdeII GATC 1 cut(s) 269
NlaIII CATG 1 cut(s) 14
PfeI GAWTC 1 cut(s) 25
PkrI GCNGC 1 cut(s) 85
Psp124BI GAGCTC 2 cut(s) 96, 136
PstI CTGCAG 1 cut(s) 88
PstNI CAGNNNCTG 1 cut(s) 128
RseI CAYNNNNRTG 1 cut(s) 68
SacI GAGCTC 2 cut(s) 96, 136
SatI GCNGC 1 cut(s) 84
Sau3AI GATC 1 cut(s) 269
SduI GDGCHC 2 cut(s) 96, 136
SetI ASST 5 cut(s) 85, 96, 136, 221, 294
SfcI CTRYAG 1 cut(s) 84
SgeI CNNG 8 cut(s) 23, 51, 107, 135, 141, 214, 301, 308
SmiMI CAYNNNNRTG 1 cut(s) 68
Sse9I AATT 2 cut(s) 153, 210
SspMI CTAG 1 cut(s) 316
SstI GAGCTC 2 cut(s) 96, 136
StyI CCWWGG 1 cut(s) 10
TaqI TCGA 1 cut(s) 96
TasI AATT 2 cut(s) 153, 210
TfiI GAWTC 1 cut(s) 25
TscAI CASTG 1 cut(s) 232
TseI GCWGC 1 cut(s) 83
TspRI CASTG 1 cut(s) 232
XapI RAATTY 1 cut(s) 210
XspI CTAG 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.