Rmu_sc0003162.1_g000010
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003162.1
OG0000656
Physical Location & Seq
Forward (+)
35995 .. 38178
2184 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003162.1_g000010.1.cds

Sequence Viewer

Length: 534 bp
atggaaagtcatggaagtttagaaaatcatacttcagcttggggtttggcaaattccatcaccattcaaatgactctgagagctgcagttgagctcaatgtgttcaacatcattgccaaatcaggtcccggagctcatctgacatcaaaagaaattgtttcacaaatccccaacccaaatccaactttagcaggtgaaaatctggagcgaatgctcaaacttttgagtgttcattctcttttatccacatctgtaagaccaaaccctactgatacgacaaagcaagaaacaagttatggtctaacaaaggaagcactttgcctagtcccgaataaagatggagtttcttttgctccggtttacaaaggtttcgaagaggtgaaggagctgatggatgtcggaggtggtgatggaactgcgattgccaagatagtgtctatgtatcctcacatccagggaatcaacttcaatttgccaagtgttgtatctaaagctcctgaattgcaaggtcagtatgtcaacatatttaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00950 ko01110 map00950 map01110
Pfam Domains
Protein Families
Dimerisation Methyltransf_2

Protein Analysis

177

Amino Acids

19.06

Weight (kDa)

6.19

Isoelectric Point (pI)

30.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000656)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g09630 FvH4_3g13140 FvH4_3g13141 FvH4_3g13160 FvH4_3g13170 FvH4_6g14540
malus_domestica MD10G1257600.v1.1
prunus_persica Prupe.4G086200_v2.0.a1
pyrus_communis pycom05g25920 pycom10g21380
rosa_chinensis RchiOBHm_Chr5g0014991 RchiOBHm_Chr5g0046111 RchiOBHm_Chr5g0056661 RchiOBHm_Chr7g0209941 RchiOBHm_Chr7g0211601 RchiOBHm_Chr7g0228691
rosa_laevigata RLG00000002994 RLG00000003075 RLG00000032124 RLG00000032125 RLG00000032158 RLG00000034388 RLG00000034564 RLG00000035118
rosa_multiflora Rmu_sc0003162.1_g000007 Rmu_sc0003162.1_g000010 Rmu_sc0003760.1_g000034 Rmu_sc0004232.1_g000016 Rmu_sc0004232.1_g000017 Rmu_sc0004232.1_g000023 Rmu_sc0004889.1_g000017 Rmu_sc0008669.1_g000001 Rmu_sc0009240.1_g000017 Rmu_sc0009255.1_g000012 Rmu_sc0013112.1_g000007
rosa_roxburghii Rroxscaffold_1G00023690 Rroxscaffold_1G00035370 Rroxscaffold_1G00035380 Rroxscaffold_1G00061590 Rroxscaffold_1G00061940 Rroxscaffold_3G00230880 Rroxscaffold_3G00247690
rosa_rugosa Rorug05G0019200 Rorug05G0022400 Rorug05G0225700 Rorug05G0246400 Rorug05G0301100 Rorug07G0117600 Rorug07G0126200
rosa_samantha Rh5AG114200 Rh5AG114300 Rh5AG117800 Rh5BG111300 Rh5BG115000 Rh5BG314800 Rh5BG383300 Rh5CG126300 Rh5CG359500 Rh5CG406400 Rh5DG110100 Rh5DG110600 Rh5DG114500 Rh5DG396000 Rh5DG396100 Rh7AG251400 Rh7AG403800 Rh7BG246000 Rh7CG268200 Rh7DG258000 Rh7DG266400
rosa_wichuraiana Rw5G009920 Rw5G010150 Rw5G028650 Rw5G034830 Rw7G021330 Rw7G022120 Rw7G033560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 182
Acc36I ACCTGC 1 cut(s) 182
AcsI RAATTY 1 cut(s) 52
AcuI CTGAAG 1 cut(s) 18
AgsI TTSAA 3 cut(s) 68, 106, 469
AjnI CCWGG 1 cut(s) 453
AluBI AGCT 6 cut(s) 38, 83, 94, 134, 388, 494
AluI AGCT 6 cut(s) 38, 83, 94, 134, 388, 494
Alw21I GWGCWC 2 cut(s) 96, 136
ApeKI GCWGC 1 cut(s) 83
ApoI RAATTY 1 cut(s) 52
AspS9I GGNCC 1 cut(s) 125
AsuC2I CCSGG 1 cut(s) 129
AsuHPI GGTGA 4 cut(s) 52, 206, 391, 419
AsuII TTCGAA 1 cut(s) 372
AvaII GGWCC 1 cut(s) 125
BanII GRGCYC 2 cut(s) 96, 136
Bbv12I GWGCWC 2 cut(s) 96, 136
BbvI GCAGC 1 cut(s) 70
BccI CCATC 4 cut(s) 65, 332, 385, 404
BciT130I CCWGG 1 cut(s) 455
BciVI GTATCC 1 cut(s) 453
BcnI CCSGG 1 cut(s) 129
BfaI CTAG 1 cut(s) 323
BfmI CTRYAG 1 cut(s) 84
BfuAI ACCTGC 1 cut(s) 182
BfuI GTATCC 1 cut(s) 453
BisI GCNGC 1 cut(s) 84
BlsI GCNGC 1 cut(s) 85
Bme1390I CCNGG 2 cut(s) 129, 455
Bme18I GGWCC 1 cut(s) 125
BmgT120I GGNCC 1 cut(s) 125
BmiI GGNNCC 1 cut(s) 127
BmrFI CCNGG 2 cut(s) 129, 455
BpmI CTGGAG 1 cut(s) 224
Bpu14I TTCGAA 1 cut(s) 372
BpuMI CCSGG 1 cut(s) 129
BsaJI CCNNGG 1 cut(s) 454
BsaWI WCCGGW 1 cut(s) 355
Bse3DI GCAATG 1 cut(s) 111
BseBI CCWGG 1 cut(s) 455
BseDI CCNNGG 1 cut(s) 454
BseGI GGATG 2 cut(s) 400, 450
BseMI GCAATG 1 cut(s) 111
BseMII CTCAG 1 cut(s) 68
BseXI GCAGC 1 cut(s) 70
BsiHKAI GWGCWC 2 cut(s) 96, 136
BsiSI CCGG 2 cut(s) 129, 356
BslFI GGGAC 2 cut(s) 111, 311
BsmFI GGGAC 2 cut(s) 111, 311
BsmI GAATGC 1 cut(s) 216
Bsp119I TTCGAA 1 cut(s) 372
Bsp1286I GDGCHC 2 cut(s) 96, 136
BspCNI CTCAG 1 cut(s) 69
BspLI GGNNCC 1 cut(s) 127
BspMAI CTGCAG 1 cut(s) 88
BspMI ACCTGC 1 cut(s) 182
BspT104I TTCGAA 1 cut(s) 372
BsrDI GCAATG 1 cut(s) 111
BssECI CCNNGG 1 cut(s) 454
Bst2UI CCWGG 1 cut(s) 455
Bst6I CTCTTC 1 cut(s) 369
BstBI TTCGAA 1 cut(s) 372
BstDEI CTNAG 1 cut(s) 77
BstF5I GGATG 2 cut(s) 400, 450
BstNI CCWGG 1 cut(s) 455
BstSCI CCNGG 2 cut(s) 127, 453
BstSFI CTRYAG 1 cut(s) 84
BstV1I GCAGC 1 cut(s) 70
BsuI GTATCC 1 cut(s) 453
BtsCI GGATG 2 cut(s) 400, 450
BveI ACCTGC 1 cut(s) 182
Cfr13I GGNCC 1 cut(s) 125
CviAII CATG 1 cut(s) 11
CviJI RGCY 6 cut(s) 38, 83, 94, 134, 388, 494
CviKI_1 RGCY 6 cut(s) 38, 83, 94, 134, 388, 494
DdeI CTNAG 1 cut(s) 77
Eam1104I CTCTTC 1 cut(s) 369
EarI CTCTTC 1 cut(s) 369
Ecl136II GAGCTC 2 cut(s) 94, 134
Eco24I GRGCYC 2 cut(s) 96, 136
Eco47I GGWCC 1 cut(s) 125
Eco53kI GAGCTC 2 cut(s) 94, 134
Eco57I CTGAAG 1 cut(s) 18
EcoICRI GAGCTC 2 cut(s) 94, 134
EcoO109I RGGNCCY 1 cut(s) 125
EcoRII CCWGG 1 cut(s) 453
EcoT38I GRGCYC 2 cut(s) 96, 136
FaeI CATG 1 cut(s) 14
FaiI YATR 6 cut(s) 12, 30, 297, 440, 516, 524
FaqI GGGAC 2 cut(s) 111, 311
FatI CATG 1 cut(s) 10
Fnu4HI GCNGC 1 cut(s) 84
FokI GGATG 2 cut(s) 407, 437
FriOI GRGCYC 2 cut(s) 96, 136
Fsp4HI GCNGC 1 cut(s) 84
FspBI CTAG 1 cut(s) 323
GluI GCNGC 1 cut(s) 84
GsuI CTGGAG 1 cut(s) 224
HapII CCGG 2 cut(s) 129, 356
Hin1II CATG 1 cut(s) 14
HincII GTYRAC 1 cut(s) 520
HindII GTYRAC 1 cut(s) 520
HinfI GANTC 2 cut(s) 73, 459
HpaII CCGG 2 cut(s) 129, 356
HphI GGTGA 4 cut(s) 52, 206, 391, 419
Hpy166II GTNNAC 2 cut(s) 361, 520
Hpy188I TCNGA 3 cut(s) 78, 141, 401
Hpy188III TCNNGA 3 cut(s) 203, 328, 497
Hpy8I GTNNAC 2 cut(s) 361, 520
HpyAV CCTTC 1 cut(s) 376
HpyCH4V TGCA 2 cut(s) 86, 505
HpyF3I CTNAG 1 cut(s) 77
Hsp92II CATG 1 cut(s) 14
LmnI GCTCC 5 cut(s) 131, 205, 358, 385, 499
LpnPI CCDG 8 cut(s) 108, 142, 177, 188, 369, 440, 467, 510
Lsp1109I GCAGC 1 cut(s) 70
MaeI CTAG 1 cut(s) 323
MboII GAAGA 1 cut(s) 386
MhlI GDGCHC 2 cut(s) 96, 136
MluCI AATT 4 cut(s) 52, 153, 469, 500
MlyI GAGTC 1 cut(s) 67
MmeI TCCRAC 2 cut(s) 206, 379
MnlI CCTC 3 cut(s) 370, 395, 456
MseI TTAA 1 cut(s) 528
MslI CAYNNNNRTG 1 cut(s) 68
MspI CCGG 2 cut(s) 129, 356
MspR9I CCNGG 2 cut(s) 129, 455
Mva1269I GAATGC 1 cut(s) 216
MvaI CCWGG 1 cut(s) 455
NciI CCSGG 1 cut(s) 129
NlaIII CATG 1 cut(s) 14
NlaIV GGNNCC 1 cut(s) 127
NspV TTCGAA 1 cut(s) 372
PaqCI CACCTGC 1 cut(s) 182
PctI GAATGC 1 cut(s) 216
PfeI GAWTC 1 cut(s) 459
PfoI TCCNGGA 1 cut(s) 127
PkrI GCNGC 1 cut(s) 85
PleI GAGTC 1 cut(s) 67
PpsI GAGTC 1 cut(s) 67
PpuMI RGGWCCY 1 cut(s) 125
Psp124BI GAGCTC 2 cut(s) 96, 136
Psp5II RGGWCCY 1 cut(s) 125
Psp6I CCWGG 1 cut(s) 453
PspGI CCWGG 1 cut(s) 453
PspN4I GGNNCC 1 cut(s) 127
PspPI GGNCC 1 cut(s) 125
PspPPI RGGWCCY 1 cut(s) 125
PstI CTGCAG 1 cut(s) 88
RseI CAYNNNNRTG 1 cut(s) 68
SacI GAGCTC 2 cut(s) 96, 136
SaqAI TTAA 1 cut(s) 528
SatI GCNGC 1 cut(s) 84
Sau96I GGNCC 1 cut(s) 125
SchI GAGTC 1 cut(s) 67
ScrFI CCNGG 2 cut(s) 129, 455
SduI GDGCHC 2 cut(s) 96, 136
SfcI CTRYAG 1 cut(s) 84
SfuI TTCGAA 1 cut(s) 372
SinI GGWCC 1 cut(s) 125
SmiMI CAYNNNNRTG 1 cut(s) 68
Sse9I AATT 4 cut(s) 52, 153, 469, 500
SspMI CTAG 1 cut(s) 323
SstI GAGCTC 2 cut(s) 96, 136
StyD4I CCNGG 2 cut(s) 127, 453
TaqI TCGA 1 cut(s) 372
TasI AATT 4 cut(s) 52, 153, 469, 500
TfiI GAWTC 1 cut(s) 459
Tru1I TTAA 1 cut(s) 528
Tru9I TTAA 1 cut(s) 528
TseI GCWGC 1 cut(s) 83
TspDTI ATGAA 1 cut(s) 221
VpaK11BI GGWCC 1 cut(s) 125
XapI RAATTY 1 cut(s) 52
XspI CTAG 1 cut(s) 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.