Rh5BG314800
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Reverse (-)
41770017 .. 41785987
15971 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG314800.1

Sequence Viewer

Length: 327 bp
ATGTCTGTTTTCTCGCCGTCTCTCACAATCGGTCTTCGCCGAAAGGTTCACGTTACAGCTCAGTGGAACGAAGGCAACTCTAGAGGGCGTGGAGTTCATCTCACATCAGAAGAAATCAAAAATCCGAGTGCAGCAATTGCGAATTTGGAGCGAATACTAAAACTGCTCAGCGTCAACTCCCTCCTTTCCGCATCTCTAAGACCAAGTGCAAATGACAACACAGTGCAAGAAGTGGCTTATGGCCTAACAAAGAAGGCACTTTGCCTAATTCCAAATGAAGATGGAGTTTCTTTAGCCCCTTTAGTAATGTATGGCTCTGAAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

108

Amino Acids

11.62

Weight (kDa)

8.93

Isoelectric Point (pI)

47.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000656)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 189
AcsI RAATTY 1 cut(s) 142
AluBI AGCT 1 cut(s) 59
AluI AGCT 1 cut(s) 59
Alw26I GTCTC 1 cut(s) 24
AoxI GGCC 1 cut(s) 241
ApeKI GCWGC 1 cut(s) 131
ApoI RAATTY 1 cut(s) 142
BbsI GAAGAC 1 cut(s) 26
BbvI GCAGC 1 cut(s) 143
BccI CCATC 1 cut(s) 275
BcoDI GTCTC 1 cut(s) 24
BfaI CTAG 1 cut(s) 81
BisI GCNGC 1 cut(s) 132
BlpI GCTNAGC 1 cut(s) 167
BlsI GCNGC 1 cut(s) 133
BmsI GCATC 1 cut(s) 200
BpiI GAAGAC 1 cut(s) 26
BplI GAGNNNNNCTC 2 cut(s) 84, 116
Bpu1102I GCTNAGC 1 cut(s) 167
BseMII CTCAG 2 cut(s) 74, 181
BseXI GCAGC 1 cut(s) 143
BsgI GTGCAG 1 cut(s) 150
BshFI GGCC 1 cut(s) 243
BsmAI GTCTC 1 cut(s) 24
BsmBI CGTCTC 1 cut(s) 24
BsnI GGCC 1 cut(s) 243
Bsp1720I GCTNAGC 1 cut(s) 167
BspACI CCGC 1 cut(s) 189
BspANI GGCC 1 cut(s) 243
BspCNI CTCAG 2 cut(s) 73, 180
Bst4CI ACNGT 1 cut(s) 223
BstAPI GCANNNNNTGC 1 cut(s) 137
BstDEI CTNAG 3 cut(s) 60, 167, 197
BstMAI GTCTC 1 cut(s) 24
BstMWI GCNNNNNNNGC 1 cut(s) 137
BstV1I GCAGC 1 cut(s) 143
BstV2I GAAGAC 1 cut(s) 26
BsuRI GGCC 1 cut(s) 243
BtsIMutI CAGTG 2 cut(s) 68, 228
CseI GACGC 1 cut(s) 160
CviJI RGCY 5 cut(s) 59, 236, 243, 296, 315
CviKI_1 RGCY 5 cut(s) 59, 236, 243, 296, 315
DdeI CTNAG 3 cut(s) 60, 167, 197
Esp3I CGTCTC 1 cut(s) 24
FaiI YATR 2 cut(s) 240, 312
Fnu4HI GCNGC 1 cut(s) 132
Fsp4HI GCNGC 1 cut(s) 132
FspBI CTAG 1 cut(s) 81
GluI GCNGC 1 cut(s) 132
HaeIII GGCC 1 cut(s) 243
HgaI GACGC 1 cut(s) 160
HincII GTYRAC 1 cut(s) 175
HindII GTYRAC 1 cut(s) 175
Hpy166II GTNNAC 2 cut(s) 49, 175
Hpy188I TCNGA 4 cut(s) 109, 126, 319, 326
Hpy188III TCNNGA 1 cut(s) 81
Hpy8I GTNNAC 2 cut(s) 49, 175
HpyAV CCTTC 2 cut(s) 65, 247
HpyCH4III ACNGT 1 cut(s) 223
HpyCH4IV ACGT 1 cut(s) 51
HpyCH4V TGCA 3 cut(s) 131, 209, 226
HpyF10VI GCNNNNNNNGC 1 cut(s) 137
HpyF3I CTNAG 3 cut(s) 60, 167, 197
HpySE526I ACGT 1 cut(s) 51
LmnI GCTCC 1 cut(s) 148
Lsp1109I GCAGC 1 cut(s) 143
LweI GCATC 1 cut(s) 200
MaeI CTAG 1 cut(s) 81
MaeII ACGT 1 cut(s) 51
MaeIII GTNAC 1 cut(s) 52
MboII GAAGA 3 cut(s) 26, 122, 290
MfeI CAATTG 1 cut(s) 135
MluCI AATT 3 cut(s) 135, 142, 267
MnlI CCTC 2 cut(s) 77, 191
MunI CAATTG 1 cut(s) 135
MwoI GCNNNNNNNGC 1 cut(s) 137
PkrI GCNGC 1 cut(s) 133
SatI GCNGC 1 cut(s) 132
SetI ASST 3 cut(s) 48, 54, 61
SfaNI GCATC 1 cut(s) 200
SgeI CNNG 7 cut(s) 25, 62, 93, 101, 138, 216, 239
Sse9I AATT 3 cut(s) 135, 142, 267
SsiI CCGC 1 cut(s) 189
SspMI CTAG 1 cut(s) 81
TaaI ACNGT 1 cut(s) 223
TaiI ACGT 1 cut(s) 54
TaqII GACCGA 1 cut(s) 20
TasI AATT 3 cut(s) 135, 142, 267
TscAI CASTG 2 cut(s) 68, 228
TseI GCWGC 1 cut(s) 131
TspDTI ATGAA 2 cut(s) 86, 291
TspRI CASTG 2 cut(s) 68, 228
XapI RAATTY 1 cut(s) 142
XbaI TCTAGA 1 cut(s) 80
XspI CTAG 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.