RLG00000003075
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
44050251 .. 44052849
2599 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003075

Sequence Viewer

Length: 1089 bp
ATGGAAAACCAGAGAATTAGCTCAGAAAACTATGTCGCTGCTTGGAATTTAGGAGGTCTAGTTGTCACTCAAATGGCTCTGAAAGCTGCAATTGAGCTCAATGTCTTCAATATCATTGCCAATTCAGGACCCGGAGCTCATCTCACATCGAAAGAAATTGTATCTCAAATTTCAACTGAGAATCCAAATGTAGCAGCTGCGAATTTGAAGCGAATACTAAGAGTTCTAAGTGTTCACTCTCTACTCTCTGTTCAAAGGCCAAGCTCAAGTGGTAAAACAATGCAAGAAGAGACTTATGGTCTAACAAAGGAGACTCTTTGGCTAGTTCCAAATGAAGATGGAGTTTCCTTAGCTCCATTTGTTTTGTTATCTTCTGAAATGGACATGGTGAAAAGCTTATCCATGCTCAAAGACACAGTGCTTGAACCTGGGTGCCTTCCTTTCAACAAGGCTTATGGTATGTCCATATATGAGTACTTGTCTGAGAAACCTGACCTAAGCCAATTGTTTAATAAGGGTGTAGGCCAAAGTTCCATCCTCGATTTTGAAGAGGTGTTAAAGGTTTACAAAGGTTTTGAAGAGGTAGAAGAGTTGATGGATGTTGGAGGAGGTGATGGAATGACAATTTCAAAAGTAGTATCTAGATATCCACACATTCATGGGATTAACTTTGATTTGCCCAACGTTATCGCTCAAGCAACTGCTAAATATCAAACAGGTGTGAAATATGTTGGTGGAGATATGTTTCAGTTTATACCAAATACACAGTCCATTATGTTGAAGTGGGTACTTCATAATTGGAATGATGATCAGTGTAAGAAAATATTGAAACGTTGTTGGGAGGCATTACCAAAAACCGAGAAGGTAATAGTTGTGGAATTTGCAATACCTGAAATACTAGAGAAAACGGAAGAGGTAAAGAAAATTATGGCATTAGATGTGGTCATGATGGCTACTCCCGGTGGAAGAGAACGAACAATTGCTGAGTTTGACGACCTATCAAAAGCTGCAGGCTTTGTTGAAACAAAGATTTTTTCAATTTCAAATGGGTGTTATGTTCTGGAGTTTCACAAAGTTGAAACATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

363

Amino Acids

40.28

Weight (kDa)

5.26

Isoelectric Point (pI)

39.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimerisation PF08100 21 - 107 1.8e-11 O-methyltransferase dimerisation domain
Methyltransf_2 PF00891 135 - 339 9.1e-56 O-methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000656)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 432
AclI AACGTT 2 cut(s) 684, 832
AcsI RAATTY 4 cut(s) 46, 168, 202, 878
AfaI GTAC 2 cut(s) 476, 789
AhdI GACNNNNNGTC 1 cut(s) 297
AjnI CCWGG 1 cut(s) 427
AluBI AGCT 9 cut(s) 21, 86, 97, 137, 197, 264, 353, 396, 1007
AluI AGCT 9 cut(s) 21, 86, 97, 137, 197, 264, 353, 396, 1007
Alw21I GWGCWC 2 cut(s) 99, 139
Alw26I GTCTC 2 cut(s) 284, 305
AoxI GGCC 2 cut(s) 257, 523
ApeKI GCWGC 5 cut(s) 38, 86, 194, 197, 1007
ApoI RAATTY 4 cut(s) 46, 168, 202, 878
ArsI GACNNNNNNTTYG 2 cut(s) 752, 784
AspS9I GGNCC 1 cut(s) 128
AsuC2I CCSGG 2 cut(s) 132, 960
AsuHPI GGTGA 2 cut(s) 400, 623
AvaII GGWCC 1 cut(s) 128
BanI GGYRCC 1 cut(s) 432
BanII GRGCYC 2 cut(s) 99, 139
BbsI GAAGAC 1 cut(s) 97
Bbv12I GWGCWC 2 cut(s) 99, 139
BbvI GCAGC 5 cut(s) 25, 73, 184, 206, 994
BccI CCATC 5 cut(s) 332, 542, 589, 608, 943
BciT130I CCWGG 1 cut(s) 429
BclI TGATCA 1 cut(s) 808
BcnI CCSGG 2 cut(s) 132, 960
BcoDI GTCTC 2 cut(s) 284, 305
BfaI CTAG 4 cut(s) 59, 323, 642, 899
BfmI CTRYAG 1 cut(s) 1008
BisI GCNGC 5 cut(s) 39, 87, 195, 198, 1008
BlsI GCNGC 5 cut(s) 40, 88, 196, 199, 1009
BmcAI AGTACT 1 cut(s) 476
Bme1390I CCNGG 3 cut(s) 132, 429, 960
Bme18I GGWCC 1 cut(s) 128
BmeRI GACNNNNNGTC 1 cut(s) 297
BmgT120I GGNCC 1 cut(s) 128
BmiI GGNNCC 2 cut(s) 130, 434
BmrFI CCNGG 3 cut(s) 132, 429, 960
BpiI GAAGAC 1 cut(s) 97
BplI GAGNNNNNCTC 2 cut(s) 126, 158
BpmI CTGGAG 1 cut(s) 1082
Bpu10I CCTNAGC 2 cut(s) 349, 497
BpuEI CTTGAG 2 cut(s) 250, 678
BpuMI CCSGG 2 cut(s) 132, 960
BsaJI CCNNGG 1 cut(s) 428
BsaXI ACNNNNNCTCC 2 cut(s) 45, 75
Bse3DI GCAATG 1 cut(s) 114
BseBI CCWGG 1 cut(s) 429
BseDI CCNNGG 1 cut(s) 428
BseGI GGATG 2 cut(s) 534, 604
BseMI GCAATG 1 cut(s) 114
BseMII CTCAG 4 cut(s) 36, 168, 474, 975
BseRI GAGGAG 1 cut(s) 621
BseXI GCAGC 5 cut(s) 25, 73, 184, 206, 994
BshFI GGCC 2 cut(s) 259, 525
BshNI GGYRCC 1 cut(s) 432
BsiHKAI GWGCWC 2 cut(s) 99, 139
BsiSI CCGG 2 cut(s) 132, 960
BsmAI GTCTC 2 cut(s) 284, 305
BsnI GGCC 2 cut(s) 259, 525
Bsp1286I GDGCHC 2 cut(s) 99, 139
Bsp143I GATC 1 cut(s) 808
BspANI GGCC 2 cut(s) 259, 525
BspCNI CTCAG 4 cut(s) 35, 169, 475, 976
BspHI TCATGA 1 cut(s) 945
BspLI GGNNCC 2 cut(s) 130, 434
BspMAI CTGCAG 1 cut(s) 1012
BspT107I GGYRCC 1 cut(s) 432
BsrDI GCAATG 1 cut(s) 114
BssECI CCNNGG 1 cut(s) 428
BssMI GATC 1 cut(s) 808
Bst2UI CCWGG 1 cut(s) 429
Bst4CI ACNGT 2 cut(s) 418, 768
Bst6I CTCTTC 6 cut(s) 282, 543, 573, 582, 906, 961
BstC8I GCNNGC 1 cut(s) 1012
BstDEI CTNAG 8 cut(s) 22, 177, 218, 227, 349, 483, 497, 984
BstF5I GGATG 2 cut(s) 534, 604
BstKTI GATC 1 cut(s) 811
BstMAI GTCTC 2 cut(s) 284, 305
BstMBI GATC 1 cut(s) 808
BstMWI GCNNNNNNNGC 1 cut(s) 83
BstNI CCWGG 1 cut(s) 429
BstSCI CCNGG 3 cut(s) 130, 427, 958
BstSFI CTRYAG 1 cut(s) 1008
BstV1I GCAGC 5 cut(s) 25, 73, 184, 206, 994
BstV2I GAAGAC 1 cut(s) 97
BsuRI GGCC 2 cut(s) 259, 525
BtsCI GGATG 2 cut(s) 534, 604
BtsIMutI CAGTG 2 cut(s) 423, 818
Cac8I GCNNGC 1 cut(s) 1012
CciI TCATGA 1 cut(s) 945
Cfr13I GGNCC 1 cut(s) 128
Csp6I GTAC 2 cut(s) 475, 788
CviAII CATG 4 cut(s) 385, 403, 659, 946
CviQI GTAC 2 cut(s) 475, 788
DdeI CTNAG 8 cut(s) 22, 177, 218, 227, 349, 483, 497, 984
DpnI GATC 1 cut(s) 810
DpnII GATC 1 cut(s) 808
DriI GACNNNNNGTC 1 cut(s) 297
Eam1104I CTCTTC 6 cut(s) 282, 543, 573, 582, 906, 961
Eam1105I GACNNNNNGTC 1 cut(s) 297
EarI CTCTTC 6 cut(s) 282, 543, 573, 582, 906, 961
Ecl136II GAGCTC 2 cut(s) 97, 137
Eco24I GRGCYC 2 cut(s) 99, 139
Eco32I GATATC 1 cut(s) 647
Eco47I GGWCC 1 cut(s) 128
Eco53kI GAGCTC 2 cut(s) 97, 137
EcoICRI GAGCTC 2 cut(s) 97, 137
EcoO109I RGGNCCY 1 cut(s) 128
EcoRII CCWGG 1 cut(s) 427
EcoRV GATATC 1 cut(s) 647
EcoT38I GRGCYC 2 cut(s) 99, 139
FaeI CATG 4 cut(s) 388, 406, 662, 949
FatI CATG 4 cut(s) 384, 402, 658, 945
FbaI TGATCA 1 cut(s) 808
Fnu4HI GCNGC 5 cut(s) 39, 87, 195, 198, 1008
FokI GGATG 2 cut(s) 521, 611
FriOI GRGCYC 2 cut(s) 99, 139
Fsp4HI GCNGC 5 cut(s) 39, 87, 195, 198, 1008
FspBI CTAG 4 cut(s) 59, 323, 642, 899
GluI GCNGC 5 cut(s) 39, 87, 195, 198, 1008
GsuI CTGGAG 1 cut(s) 1082
HaeIII GGCC 2 cut(s) 259, 525
HapII CCGG 2 cut(s) 132, 960
Hin1II CATG 4 cut(s) 388, 406, 662, 949
HindIII AAGCTT 1 cut(s) 394
HinfI GANTC 2 cut(s) 181, 313
HpaII CCGG 2 cut(s) 132, 960
HphI GGTGA 2 cut(s) 400, 623
Hpy166II GTNNAC 2 cut(s) 235, 565
Hpy188I TCNGA 4 cut(s) 25, 81, 376, 484
Hpy188III TCNNGA 4 cut(s) 126, 642, 946, 1061
Hpy8I GTNNAC 2 cut(s) 235, 565
HpyAV CCTTC 2 cut(s) 446, 856
HpyCH4III ACNGT 2 cut(s) 418, 768
HpyCH4IV ACGT 2 cut(s) 684, 832
HpyCH4V TGCA 4 cut(s) 89, 283, 884, 1010
HpyF10VI GCNNNNNNNGC 1 cut(s) 83
HpyF3I CTNAG 8 cut(s) 22, 177, 218, 227, 349, 483, 497, 984
HpySE526I ACGT 2 cut(s) 684, 832
Hsp92II CATG 4 cut(s) 388, 406, 662, 949
Ksp22I TGATCA 1 cut(s) 808
Kzo9I GATC 1 cut(s) 808
LmnI GCTCC 2 cut(s) 134, 358
Lsp1109I GCAGC 5 cut(s) 25, 73, 184, 206, 994
MaeI CTAG 4 cut(s) 59, 323, 642, 899
MaeII ACGT 2 cut(s) 684, 832
MaeIII GTNAC 1 cut(s) 64
MalI GATC 1 cut(s) 810
MboI GATC 1 cut(s) 808
MboII GAAGA 9 cut(s) 97, 299, 347, 363, 560, 590, 599, 923, 978
MfeI CAATTG 3 cut(s) 90, 503, 978
MhlI GDGCHC 2 cut(s) 99, 139
MlyI GAGTC 1 cut(s) 307
MmeI TCCRAC 1 cut(s) 583
MnlI CCTC 8 cut(s) 47, 544, 548, 574, 599, 602, 835, 907
MseI TTAA 3 cut(s) 510, 557, 666
MslI CAYNNNNRTG 2 cut(s) 71, 657
MspA1I CMGCKG 1 cut(s) 197
MspI CCGG 2 cut(s) 132, 960
MspR9I CCNGG 3 cut(s) 132, 429, 960
MunI CAATTG 3 cut(s) 90, 503, 978
MvaI CCWGG 1 cut(s) 429
MwoI GCNNNNNNNGC 1 cut(s) 83
NciI CCSGG 2 cut(s) 132, 960
NdeII GATC 1 cut(s) 808
NlaIII CATG 4 cut(s) 388, 406, 662, 949
NlaIV GGNNCC 2 cut(s) 130, 434
NmuCI GTSAC 1 cut(s) 64
PagI TCATGA 1 cut(s) 945
PfeI GAWTC 1 cut(s) 181
PkrI GCNGC 5 cut(s) 40, 88, 196, 199, 1009
PleI GAGTC 1 cut(s) 307
PpsI GAGTC 1 cut(s) 307
PpuMI RGGWCCY 1 cut(s) 128
Psp124BI GAGCTC 2 cut(s) 99, 139
Psp1406I AACGTT 2 cut(s) 684, 832
Psp5II RGGWCCY 1 cut(s) 128
Psp6I CCWGG 1 cut(s) 427
PspGI CCWGG 1 cut(s) 427
PspN4I GGNNCC 2 cut(s) 130, 434
PspPI GGNCC 1 cut(s) 128
PspPPI RGGWCCY 1 cut(s) 128
PstI CTGCAG 1 cut(s) 1012
PvuII CAGCTG 1 cut(s) 197
RsaI GTAC 2 cut(s) 476, 789
RsaNI GTAC 2 cut(s) 475, 788
RseI CAYNNNNRTG 2 cut(s) 71, 657
SacI GAGCTC 2 cut(s) 99, 139
SaqAI TTAA 3 cut(s) 510, 557, 666
SatI GCNGC 5 cut(s) 39, 87, 195, 198, 1008
Sau3AI GATC 1 cut(s) 808
Sau96I GGNCC 1 cut(s) 128
ScaI AGTACT 1 cut(s) 476
SchI GAGTC 1 cut(s) 307
ScrFI CCNGG 3 cut(s) 132, 429, 960
SduI GDGCHC 2 cut(s) 99, 139
SfcI CTRYAG 1 cut(s) 1008
SinI GGWCC 1 cut(s) 128
SmiMI CAYNNNNRTG 2 cut(s) 71, 657
SmlI CTYRAG 2 cut(s) 265, 693
SmoI CTYRAG 2 cut(s) 265, 693
SspI AATATT 1 cut(s) 825
SspMI CTAG 4 cut(s) 59, 323, 642, 899
SstI GAGCTC 2 cut(s) 99, 139
StyD4I CCNGG 3 cut(s) 130, 427, 958
TaaI ACNGT 2 cut(s) 418, 768
TaiI ACGT 2 cut(s) 687, 835
TaqI TCGA 2 cut(s) 149, 540
TatI WGTACW 1 cut(s) 474
TfiI GAWTC 1 cut(s) 181
Tru1I TTAA 3 cut(s) 510, 557, 666
Tru9I TTAA 3 cut(s) 510, 557, 666
TscAI CASTG 2 cut(s) 423, 818
TseFI GTSAC 1 cut(s) 64
TseI GCWGC 5 cut(s) 38, 86, 194, 197, 1007
Tsp45I GTSAC 1 cut(s) 64
TspDTI ATGAA 3 cut(s) 348, 647, 782
TspGWI ACGGA 1 cut(s) 923
TspRI CASTG 2 cut(s) 423, 818
VpaK11BI GGWCC 1 cut(s) 128
XapI RAATTY 4 cut(s) 46, 168, 202, 878
XbaI TCTAGA 1 cut(s) 641
XspI CTAG 4 cut(s) 59, 323, 642, 899
ZrmI AGTACT 1 cut(s) 476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.