FvH4_3g13141
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000656
Physical Location & Seq
Reverse (-)
7849447 .. 7851721
2275 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g13141.t1

Sequence Viewer

Length: 1032 bp
ATGGAAAGCCATGGAAGTTTAGAGAATCATATTTCTGCTTGGGGTGTGTCAACTTCACTCACCATTCAAATGACTCTAAAAGCTGCAATAGAGCTCGATGTGTTCAACATCATTGCCAAAGCAGGGTCTGGAGCTCATCTTACATCAAAACAAATTGTTTCCCACATCCCAACCACGAAACCAAACTCAGCAATTGAAAACTTGGAGAGAATTCTAAGGTTTCTTAGTTTCCATTCCCTACTATCAACATCTCAAACACCAAACCCTAATGACCTGACCATCAAAGAAACCAGCTACCGGCTTACAAAGGATGCCCTTTGCCTAGTCCCCAATGAAAATGGAGTTTCTTTTGCTCCATTTTTGATTTGGTGCTCTGAAATGCACACTTTCAAGAGCTTGTCCATGCTCAAATACACGGTGCTTGAACCGAAGAGTACTCCATTCCTGAAAGCTCATGGGGAGACCATGTATGAATACATGTCCAAGAAGCCAGAGTTGTGCCAATTGTTTGATAAAGTAATGAGGCTTCACTCTCATATATACTACGAACAAAAGGTGTTTGAAGAGTATAAAGGTTTTGGAGAGGTGAAAGAGCTTATGGATGTAGGAGGGGGCGATGGAAGTGCCATTGCCAAAATAGTGTCAGTATATCCTCATATTCAGGGAATCAACTTCAATTTGCCCAGTGTGGTTGCTCGTGCTCCTGAATATCAAGATGGGGATATGCTTGAAACAATACCAGATACACAGGCCATTATGCTAAAGGAAACTCAGAAACAGTCTAGGCAAGAACAGATCAATATGATATTGTCATACTTTTCATTTAATACCAGCCTGATTGAAGCAGGACACTTGAACTTGGAGCGCTCCCAATCTTTGACAGAATCCCTCTTCGAGTTGCCCTGTGGCCGACTTGTACTACGGTGCCCTCAAATGCTTAACAGACGTGCAAAGCGGCACTTTCAGCCTTCATATTTGTATGTTACTTCCCCCTTGGTCCCTGAAACCGAAACTGTCATGCTGCATTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00950 ko01110 map00950 map01110
Pfam Domains
Protein Families
Dimerisation Methyltransf_2

Protein Analysis

344

Amino Acids

38.79

Weight (kDa)

6.36

Isoelectric Point (pI)

45.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimerisation PF08100 18 - 109 4.5e-11 O-methyltransferase dimerisation domain
Methyltransf_2 PF00891 136 - 270 2.9e-22 O-methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000656)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g09630 FvH4_3g13140 FvH4_3g13141 FvH4_3g13160 FvH4_3g13170 FvH4_6g14540
malus_domestica MD10G1257600.v1.1
prunus_persica Prupe.4G086200_v2.0.a1
pyrus_communis pycom05g25920 pycom10g21380
rosa_chinensis RchiOBHm_Chr5g0014991 RchiOBHm_Chr5g0046111 RchiOBHm_Chr5g0056661 RchiOBHm_Chr7g0209941 RchiOBHm_Chr7g0211601 RchiOBHm_Chr7g0228691
rosa_laevigata RLG00000002994 RLG00000003075 RLG00000032124 RLG00000032125 RLG00000032158 RLG00000034388 RLG00000034564 RLG00000035118
rosa_multiflora Rmu_sc0003162.1_g000007 Rmu_sc0003162.1_g000010 Rmu_sc0003760.1_g000034 Rmu_sc0004232.1_g000016 Rmu_sc0004232.1_g000017 Rmu_sc0004232.1_g000023 Rmu_sc0004889.1_g000017 Rmu_sc0008669.1_g000001 Rmu_sc0009240.1_g000017 Rmu_sc0009255.1_g000012 Rmu_sc0013112.1_g000007
rosa_roxburghii Rroxscaffold_1G00023690 Rroxscaffold_1G00035370 Rroxscaffold_1G00035380 Rroxscaffold_1G00061590 Rroxscaffold_1G00061940 Rroxscaffold_3G00230880 Rroxscaffold_3G00247690
rosa_rugosa Rorug05G0019200 Rorug05G0022400 Rorug05G0225700 Rorug05G0246400 Rorug05G0301100 Rorug07G0117600 Rorug07G0126200
rosa_samantha Rh5AG114200 Rh5AG114300 Rh5AG117800 Rh5BG111300 Rh5BG115000 Rh5BG314800 Rh5BG383300 Rh5CG126300 Rh5CG359500 Rh5CG406400 Rh5DG110100 Rh5DG110600 Rh5DG114500 Rh5DG396000 Rh5DG396100 Rh7AG251400 Rh7AG403800 Rh7BG246000 Rh7CG268200 Rh7DG258000 Rh7DG266400
rosa_wichuraiana Rw5G009920 Rw5G010150 Rw5G028650 Rw5G034830 Rw7G021330 Rw7G022120 Rw7G033560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 924
AciI CCGC 1 cut(s) 955
AcoI YGGCCR 1 cut(s) 907
AcsI RAATTY 1 cut(s) 210
AfaI GTAC 2 cut(s) 436, 918
AfeI AGCGCT 1 cut(s) 866
AfiI CCNNNNNNNGG 2 cut(s) 123, 297
AflIII ACRYGT 1 cut(s) 477
AjiI CACGTC 1 cut(s) 947
AluBI AGCT 7 cut(s) 83, 94, 134, 294, 396, 452, 595
AluI AGCT 7 cut(s) 83, 94, 134, 294, 396, 452, 595
Alw21I GWGCWC 4 cut(s) 96, 136, 374, 703
Alw26I GTCTC 1 cut(s) 455
AlwNI CAGNNNCTG 1 cut(s) 128
Aor51HI AGCGCT 1 cut(s) 866
AoxI GGCC 2 cut(s) 750, 907
ApeKI GCWGC 2 cut(s) 83, 1021
ApoI RAATTY 1 cut(s) 210
AspLEI GCGC 1 cut(s) 867
AspS9I GGNCC 1 cut(s) 997
AsuHPI GGTGA 2 cut(s) 52, 598
AvaII GGWCC 1 cut(s) 997
BaeGI GKGCMC 1 cut(s) 929
BanI GGYRCC 1 cut(s) 924
BanII GRGCYC 2 cut(s) 96, 136
BarI GAAGNNNNNNTAC 2 cut(s) 510, 542
BauI CACGAG 1 cut(s) 696
Bbv12I GWGCWC 4 cut(s) 96, 136, 374, 703
BbvI GCAGC 2 cut(s) 70, 1008
BccI CCATC 3 cut(s) 287, 611, 710
BcgI CGANNNNNNTGC 2 cut(s) 605, 639
BcoDI GTCTC 1 cut(s) 455
BfaI CTAG 2 cut(s) 323, 783
BfoI RGCGCY 1 cut(s) 868
BisI GCNGC 3 cut(s) 84, 956, 1022
BlsI GCNGC 3 cut(s) 85, 957, 1023
BmcAI AGTACT 1 cut(s) 436
Bme18I GGWCC 1 cut(s) 997
BmgBI CACGTC 1 cut(s) 947
BmgT120I GGNCC 1 cut(s) 997
BmiI GGNNCC 2 cut(s) 926, 999
BmrI ACTGGG 1 cut(s) 678
BmsI GCATC 1 cut(s) 301
BmuI ACTGGG 1 cut(s) 678
BpmI CTGGAG 1 cut(s) 150
BsaI GGTCTC 1 cut(s) 455
BsaJI CCNNGG 2 cut(s) 10, 993
BsaXI ACNNNNNCTCC 2 cut(s) 452, 482
Bsc4I CCNNNNNNNGG 2 cut(s) 123, 297
Bse118I RCCGGY 1 cut(s) 297
Bse1I ACTGG 1 cut(s) 684
Bse3DI GCAATG 2 cut(s) 111, 627
BseDI CCNNGG 2 cut(s) 10, 993
BseGI GGATG 3 cut(s) 165, 316, 607
BseLI CCNNNNNNNGG 2 cut(s) 123, 297
BseMI GCAATG 2 cut(s) 111, 627
BseMII CTCAG 2 cut(s) 201, 785
BseNI ACTGG 1 cut(s) 684
BseSI GKGCMC 1 cut(s) 929
BseXI GCAGC 2 cut(s) 70, 1008
BshFI GGCC 2 cut(s) 752, 909
BshNI GGYRCC 1 cut(s) 924
BsiHKAI GWGCWC 4 cut(s) 96, 136, 374, 703
BsiSI CCGG 1 cut(s) 298
BslFI GGGAC 2 cut(s) 311, 983
BslI CCNNNNNNNGG 2 cut(s) 123, 297
BsmAI GTCTC 1 cut(s) 455
BsmFI GGGAC 2 cut(s) 311, 983
BsnI GGCC 2 cut(s) 752, 909
Bso31I GGTCTC 1 cut(s) 455
Bsp1286I GDGCHC 5 cut(s) 96, 136, 374, 703, 929
Bsp143I GATC 1 cut(s) 795
Bsp19I CCATGG 1 cut(s) 10
BspACI CCGC 1 cut(s) 955
BspANI GGCC 2 cut(s) 752, 909
BspCNI CTCAG 2 cut(s) 200, 784
BspLI GGNNCC 2 cut(s) 926, 999
BspT107I GGYRCC 1 cut(s) 924
BspTNI GGTCTC 1 cut(s) 455
BsrDI GCAATG 2 cut(s) 111, 627
BsrFI RCCGGY 1 cut(s) 297
BsrI ACTGG 1 cut(s) 684
BssAI RCCGGY 1 cut(s) 297
BssECI CCNNGG 2 cut(s) 10, 993
BssMI GATC 1 cut(s) 795
BssSI CACGAG 1 cut(s) 696
BssT1I CCWWGG 2 cut(s) 10, 993
Bst2BI CACGAG 1 cut(s) 696
Bst4CI ACNGT 4 cut(s) 418, 780, 924, 1015
Bst6I CTCTTC 3 cut(s) 425, 558, 896
BstDEI CTNAG 4 cut(s) 187, 215, 224, 771
BstDSI CCRYGG 1 cut(s) 10
BstF5I GGATG 3 cut(s) 165, 316, 607
BstH2I RGCGCY 1 cut(s) 868
BstHHI GCGC 1 cut(s) 867
BstKTI GATC 1 cut(s) 798
BstMAI GTCTC 1 cut(s) 455
BstMBI GATC 1 cut(s) 795
BstMWI GCNNNNNNNGC 1 cut(s) 964
BstNSI RCATGY 1 cut(s) 481
BstSLI GKGCMC 1 cut(s) 929
BstV1I GCAGC 2 cut(s) 70, 1008
BsuRI GGCC 2 cut(s) 752, 909
BtgI CCRYGG 1 cut(s) 10
BtgZI GCGATG 1 cut(s) 630
BtrI CACGTC 1 cut(s) 947
BtsCI GGATG 3 cut(s) 165, 316, 607
BtsIMutI CAGTG 1 cut(s) 691
CaiI CAGNNNCTG 1 cut(s) 128
CfoI GCGC 1 cut(s) 867
Cfr10I RCCGGY 1 cut(s) 297
Cfr13I GGNCC 1 cut(s) 997
Csp6I GTAC 2 cut(s) 435, 917
CviAII CATG 6 cut(s) 11, 403, 455, 466, 478, 1018
CviQI GTAC 2 cut(s) 435, 917
DdeI CTNAG 4 cut(s) 187, 215, 224, 771
DpnI GATC 1 cut(s) 797
DpnII GATC 1 cut(s) 795
EaeI YGGCCR 1 cut(s) 907
Eam1104I CTCTTC 3 cut(s) 425, 558, 896
EarI CTCTTC 3 cut(s) 425, 558, 896
Ecl136II GAGCTC 2 cut(s) 94, 134
Eco130I CCWWGG 2 cut(s) 10, 993
Eco24I GRGCYC 2 cut(s) 96, 136
Eco31I GGTCTC 1 cut(s) 455
Eco47I GGWCC 1 cut(s) 997
Eco47III AGCGCT 1 cut(s) 866
Eco53kI GAGCTC 2 cut(s) 94, 134
EcoICRI GAGCTC 2 cut(s) 94, 134
EcoRI GAATTC 1 cut(s) 210
EcoT14I CCWWGG 2 cut(s) 10, 993
EcoT38I GRGCYC 2 cut(s) 96, 136
ErhI CCWWGG 2 cut(s) 10, 993
FaeI CATG 6 cut(s) 14, 406, 458, 469, 481, 1021
FalI AAGNNNNNCTT 2 cut(s) 944, 976
FaqI GGGAC 2 cut(s) 311, 983
FatI CATG 6 cut(s) 10, 402, 454, 465, 477, 1017
Fnu4HI GCNGC 3 cut(s) 84, 956, 1022
FokI GGATG 3 cut(s) 152, 323, 614
FriOI GRGCYC 2 cut(s) 96, 136
Fsp4HI GCNGC 3 cut(s) 84, 956, 1022
FspBI CTAG 2 cut(s) 323, 783
GlaI GCGC 1 cut(s) 866
GluI GCNGC 3 cut(s) 84, 956, 1022
GsuI CTGGAG 1 cut(s) 150
HaeII RGCGCY 1 cut(s) 868
HaeIII GGCC 2 cut(s) 752, 909
HapII CCGG 1 cut(s) 298
HhaI GCGC 1 cut(s) 867
Hin1II CATG 6 cut(s) 14, 406, 458, 469, 481, 1021
Hin6I GCGC 1 cut(s) 865
HinP1I GCGC 1 cut(s) 865
HincII GTYRAC 1 cut(s) 51
HindII GTYRAC 1 cut(s) 51
HinfI GANTC 4 cut(s) 25, 73, 666, 884
HpaII CCGG 1 cut(s) 298
HphI GGTGA 2 cut(s) 52, 598
Hpy166II GTNNAC 1 cut(s) 51
Hpy188I TCNGA 2 cut(s) 376, 774
Hpy188III TCNNGA 5 cut(s) 129, 391, 445, 704, 713
Hpy8I GTNNAC 1 cut(s) 51
HpyAV CCTTC 1 cut(s) 978
HpyCH4III ACNGT 4 cut(s) 418, 780, 924, 1015
HpyCH4IV ACGT 1 cut(s) 946
HpyCH4V TGCA 4 cut(s) 86, 382, 950, 1024
HpyF10VI GCNNNNNNNGC 1 cut(s) 964
HpyF3I CTNAG 4 cut(s) 187, 215, 224, 771
HpySE526I ACGT 1 cut(s) 946
Hsp92II CATG 6 cut(s) 14, 406, 458, 469, 481, 1021
HspAI GCGC 1 cut(s) 865
Kzo9I GATC 1 cut(s) 795
LmnI GCTCC 5 cut(s) 131, 358, 706, 862, 872
Lsp1109I GCAGC 2 cut(s) 70, 1008
LweI GCATC 1 cut(s) 301
MaeI CTAG 2 cut(s) 323, 783
MaeII ACGT 1 cut(s) 946
MaeIII GTNAC 1 cut(s) 982
MalI GATC 1 cut(s) 797
MboI GATC 1 cut(s) 795
MboII GAAGA 3 cut(s) 442, 575, 883
MfeI CAATTG 2 cut(s) 192, 503
MhlI GDGCHC 5 cut(s) 96, 136, 374, 703, 929
MluCI AATT 5 cut(s) 153, 192, 210, 503, 676
MlyI GAGTC 1 cut(s) 67
MnlI CCTC 6 cut(s) 516, 577, 602, 663, 899, 939
MseI TTAA 2 cut(s) 825, 939
MslI CAYNNNNRTG 1 cut(s) 68
MspI CCGG 1 cut(s) 298
MunI CAATTG 2 cut(s) 192, 503
MwoI GCNNNNNNNGC 1 cut(s) 964
NcoI CCATGG 1 cut(s) 10
NdeII GATC 1 cut(s) 795
NlaIII CATG 6 cut(s) 14, 406, 458, 469, 481, 1021
NlaIV GGNNCC 2 cut(s) 926, 999
NspI RCATGY 1 cut(s) 481
PciI ACATGT 1 cut(s) 477
PfeI GAWTC 3 cut(s) 25, 666, 884
PkrI GCNGC 3 cut(s) 85, 957, 1023
PleI GAGTC 1 cut(s) 67
PpsI GAGTC 1 cut(s) 67
PscI ACATGT 1 cut(s) 477
Psp124BI GAGCTC 2 cut(s) 96, 136
PspN4I GGNNCC 2 cut(s) 926, 999
PspPI GGNCC 1 cut(s) 997
PstNI CAGNNNCTG 1 cut(s) 128
RsaI GTAC 2 cut(s) 436, 918
RsaNI GTAC 2 cut(s) 435, 917
RseI CAYNNNNRTG 1 cut(s) 68
SacI GAGCTC 2 cut(s) 96, 136
SaqAI TTAA 2 cut(s) 825, 939
SatI GCNGC 3 cut(s) 84, 956, 1022
Sau3AI GATC 1 cut(s) 795
Sau96I GGNCC 1 cut(s) 997
ScaI AGTACT 1 cut(s) 436
SchI GAGTC 1 cut(s) 67
SduI GDGCHC 5 cut(s) 96, 136, 374, 703, 929
SfaNI GCATC 1 cut(s) 301
SinI GGWCC 1 cut(s) 997
SmiMI CAYNNNNRTG 1 cut(s) 68
Sse9I AATT 5 cut(s) 153, 192, 210, 503, 676
SsiI CCGC 1 cut(s) 955
SspMI CTAG 2 cut(s) 323, 783
SstI GAGCTC 2 cut(s) 96, 136
StyI CCWWGG 2 cut(s) 10, 993
TaaI ACNGT 4 cut(s) 418, 780, 924, 1015
TaiI ACGT 1 cut(s) 949
TaqI TCGA 2 cut(s) 96, 894
TasI AATT 5 cut(s) 153, 192, 210, 503, 676
TatI WGTACW 2 cut(s) 434, 916
TauI GCSGC 1 cut(s) 958
TfiI GAWTC 3 cut(s) 25, 666, 884
Tru1I TTAA 2 cut(s) 825, 939
Tru9I TTAA 2 cut(s) 825, 939
TscAI CASTG 1 cut(s) 691
TseI GCWGC 2 cut(s) 83, 1021
TspDTI ATGAA 4 cut(s) 348, 486, 810, 960
TspRI CASTG 1 cut(s) 691
VpaK11BI GGWCC 1 cut(s) 997
XapI RAATTY 1 cut(s) 210
XceI RCATGY 1 cut(s) 481
XcmI CCANNNNNNNNNTGG 1 cut(s) 363
XspI CTAG 2 cut(s) 323, 783
ZrmI AGTACT 1 cut(s) 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.