FvH4_5g25692

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
17201641 .. 17202212
572 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g25692.t1

Sequence Viewer

Length: 345 bp
ATGATGGGAGCGTACAGCAGGTTTGCTGAGAGAGAACAACAGTCAAGGGCGCAGGAGACTAATGTTGAAAGACACAGGCAACAAAGCATAAAGGATGCTGGAGAACATTTCATTACTATTTGTTCCTTGTGTGTGGGTGGCCAACTACAGGAGAAGAGGATGATGGCTCAATGGTCTCGTGTGCGGAGTGAGACAAAGGTAAACTTGAAGAAAAAGAAAAAGAAGAAGAAGACGAAAGATAACATGGAACGTTGGGTATTCACATCGCCAGATTACGACGACTTTCGAACAACATGTTTCATCAAAGACAAGATATGGTCAGCAATAATTGACAGCAGCCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

13.51

Weight (kDa)

9.71

Isoelectric Point (pI)

49.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 9
AciI CCGC 1 cut(s) 184
AclI AACGTT 1 cut(s) 250
AcoI YGGCCR 1 cut(s) 139
AfaI GTAC 1 cut(s) 14
AfiI CCNNNNNNNGG 1 cut(s) 148
AflIII ACRYGT 1 cut(s) 293
AgsI TTSAA 2 cut(s) 68, 208
Alw26I GTCTC 3 cut(s) 50, 180, 185
AoxI GGCC 1 cut(s) 139
ApeKI GCWGC 1 cut(s) 336
AspLEI GCGC 1 cut(s) 52
AsuII TTCGAA 1 cut(s) 286
BalI TGGCCA 1 cut(s) 141
BauI CACGAG 1 cut(s) 177
BbsI GAAGAC 1 cut(s) 236
BccI CCATC 1 cut(s) 157
BcoDI GTCTC 3 cut(s) 50, 180, 185
BfmI CTRYAG 1 cut(s) 146
BfuAI ACCTGC 1 cut(s) 9
BisI GCNGC 1 cut(s) 337
BlsI GCNGC 1 cut(s) 338
BmsI GCATC 1 cut(s) 85
BpiI GAAGAC 1 cut(s) 236
BpmI CTGGAG 1 cut(s) 120
Bpu14I TTCGAA 1 cut(s) 286
BsaI GGTCTC 1 cut(s) 180
Bsc4I CCNNNNNNNGG 1 cut(s) 148
BseGI GGATG 2 cut(s) 100, 165
BseLI CCNNNNNNNGG 1 cut(s) 148
BseMII CTCAG 1 cut(s) 18
BshFI GGCC 1 cut(s) 141
BslI CCNNNNNNNGG 1 cut(s) 148
BsmAI GTCTC 3 cut(s) 50, 180, 185
BsnI GGCC 1 cut(s) 141
Bso31I GGTCTC 1 cut(s) 180
Bsp119I TTCGAA 1 cut(s) 286
BspACI CCGC 1 cut(s) 184
BspANI GGCC 1 cut(s) 141
BspCNI CTCAG 1 cut(s) 19
BspMI ACCTGC 1 cut(s) 9
BspT104I TTCGAA 1 cut(s) 286
BspTNI GGTCTC 1 cut(s) 180
BssSI CACGAG 1 cut(s) 177
Bst2BI CACGAG 1 cut(s) 177
Bst4CI ACNGT 1 cut(s) 42
Bst6I CTCTTC 1 cut(s) 149
BstBI TTCGAA 1 cut(s) 286
BstDEI CTNAG 1 cut(s) 27
BstF5I GGATG 2 cut(s) 100, 165
BstHHI GCGC 1 cut(s) 52
BstMAI GTCTC 3 cut(s) 50, 180, 185
BstNSI RCATGY 1 cut(s) 297
BstSFI CTRYAG 1 cut(s) 146
BstV2I GAAGAC 1 cut(s) 236
BsuRI GGCC 1 cut(s) 141
BtgZI GCGATG 1 cut(s) 249
BtsCI GGATG 2 cut(s) 100, 165
BveI ACCTGC 1 cut(s) 9
CfoI GCGC 1 cut(s) 52
Csp6I GTAC 1 cut(s) 13
CviAII CATG 2 cut(s) 244, 294
CviJI RGCY 3 cut(s) 141, 167, 339
CviKI_1 RGCY 3 cut(s) 141, 167, 339
CviQI GTAC 1 cut(s) 13
DdeI CTNAG 1 cut(s) 27
EaeI YGGCCR 1 cut(s) 139
Eam1104I CTCTTC 1 cut(s) 149
EarI CTCTTC 1 cut(s) 149
Eco31I GGTCTC 1 cut(s) 180
FaeI CATG 2 cut(s) 247, 297
FaiI YATR 4 cut(s) 89, 245, 295, 316
FalI AAGNNNNNCTT 2 cut(s) 188, 220
FatI CATG 2 cut(s) 243, 293
Fnu4HI GCNGC 1 cut(s) 337
FokI GGATG 2 cut(s) 107, 172
Fsp4HI GCNGC 1 cut(s) 337
GlaI GCGC 1 cut(s) 51
GluI GCNGC 1 cut(s) 337
GsuI CTGGAG 1 cut(s) 120
HaeIII GGCC 1 cut(s) 141
HhaI GCGC 1 cut(s) 52
Hin1II CATG 2 cut(s) 247, 297
Hin6I GCGC 1 cut(s) 50
HinP1I GCGC 1 cut(s) 50
Hpy166II GTNNAC 1 cut(s) 202
Hpy8I GTNNAC 1 cut(s) 202
Hpy99I CGWCG 1 cut(s) 281
HpyCH4III ACNGT 1 cut(s) 42
HpyCH4IV ACGT 1 cut(s) 250
HpyF3I CTNAG 1 cut(s) 27
HpySE526I ACGT 1 cut(s) 250
Hsp92II CATG 2 cut(s) 247, 297
HspAI GCGC 1 cut(s) 50
LmnI GCTCC 1 cut(s) 8
LpnPI CCDG 6 cut(s) 4, 38, 61, 84, 134, 282
LweI GCATC 1 cut(s) 85
MaeII ACGT 1 cut(s) 250
MboII GAAGA 5 cut(s) 166, 220, 235, 238, 241
MlsI TGGCCA 1 cut(s) 141
MluCI AATT 1 cut(s) 327
MluNI TGGCCA 1 cut(s) 141
MnlI CCTC 1 cut(s) 150
Mox20I TGGCCA 1 cut(s) 141
MscI TGGCCA 1 cut(s) 141
Msp20I TGGCCA 1 cut(s) 141
NlaIII CATG 2 cut(s) 247, 297
NspI RCATGY 1 cut(s) 297
NspV TTCGAA 1 cut(s) 286
PciI ACATGT 1 cut(s) 293
PkrI GCNGC 1 cut(s) 338
PscI ACATGT 1 cut(s) 293
Psp1406I AACGTT 1 cut(s) 250
RsaI GTAC 1 cut(s) 14
RsaNI GTAC 1 cut(s) 13
SatI GCNGC 1 cut(s) 337
SetI ASST 3 cut(s) 23, 201, 253
SfaNI GCATC 1 cut(s) 85
SfcI CTRYAG 1 cut(s) 146
SfuI TTCGAA 1 cut(s) 286
Sse9I AATT 1 cut(s) 327
SsiI CCGC 1 cut(s) 184
TaaI ACNGT 1 cut(s) 42
TaiI ACGT 1 cut(s) 253
TaqI TCGA 1 cut(s) 286
TasI AATT 1 cut(s) 327
TseI GCWGC 1 cut(s) 336
TspDTI ATGAA 2 cut(s) 100, 289
XceI RCATGY 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.