Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001259

Physical Location & Seq

Genomic Coordinates Reverse (-)

30620308 .. 30628698

Gene Structure 8391 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG188400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGTCATGCATGCCTAATTGTGTTCAAGATCAACCCAAGGAGAAGTCATTGCCCATTCCTTTTCAAGTGGAGGAGTTCAAGTTTCAAGATGTTTATTCTAAAGTTGTCTACGGTATTGGATTCATGGTACTATGGATTCATCAAGAAAAGTCAAGTCCCGGTACCCAATTCAAGATCCGCTCTTTCCAAGACAGCGTAGTCAAGAAAATTAATAGGATTTATAATCTTGTTTCTTACTGGAGGGCCAGCTGGGGCTTTGATTGTTGCTCCTACGAGGATGAAGCAGCCTGCCATTGTATTGATGATCTGGAGAAAATGAAACGGATTTATCATTGTGCAGTGGAGGGGAATGCTCTTAAGGCAATTGAACTGACAGAACAGCTGGCGAATGACTTACTGGAGAAAAATAAAGACTTGCATTTTGATCTTCTCAGCCTTCACTTTGTTGAACTTGTTTGCTCTAGAAATAAAGGGAGCATGGATCAGCATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLTH

Protein Analysis

164

Amino Acids

19.05

Weight (kDa)

5.85

Isoelectric Point (pI)

48.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTLH	PF10607	104 - 155	2e-07	CTLH/CRA C-terminal to LisH motif domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001259)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13320
fragaria_vesca	FvH4_5g25692
rosa_chinensis	RchiOBHm_Chr2g0137451 RchiOBHm_Chr2g0160931 RchiOBHm_Chr3g0448801 RchiOBHm_Chr3g0478501 RchiOBHm_Chr4g0401031 RchiOBHm_Chr4g0434691 RchiOBHm_Chr5g0023581 RchiOBHm_Chr5g0058431 RchiOBHm_Chr6g0250181 RchiOBHm_Chr6g0290461 RchiOBHm_Chr6g0300101 RchiOBHm_Chr6g0310791 RchiOBHm_Chr7g0197901 RchiOBHm_Chr7g0228641
rosa_multiflora	Rmu_co8205962.1_g000001 Rmu_sc0000423.1_g000017 Rmu_sc0000639.1_g000014 Rmu_sc0000753.1_g000043 Rmu_sc0001023.1_g000036 Rmu_sc0001492.1_g000004 Rmu_sc0002038.1_g000025 Rmu_sc0002761.1_g000007 Rmu_sc0002986.1_g000050 Rmu_sc0003383.1_g000016 Rmu_sc0003627.1_g000009 Rmu_sc0004345.1_g000005 Rmu_sc0006770.1_g000009 Rmu_sc0008421.1_g000002 Rmu_sc0020916.1_g000001 Rmu_sc0026853.1_g000001 Rmu_ssc0000225.1_g000001 Rmu_ssc0000446.1_g000021
rosa_roxburghii	Rroxscaffold_1G00014750 Rroxscaffold_1G00022410 Rroxscaffold_2G00095780 Rroxscaffold_2G00135550 Rroxscaffold_4G00325760 Rroxscaffold_4G00331060 Rroxscaffold_6G00402470 Rroxscaffold_6G00427850
rosa_samantha	Rh1DG013300 Rh2AG039600 Rh2AG319100 Rh2AG482400 Rh2AG563800 Rh3CG037400 Rh4DG115600 Rh5DG036700 Rh5DG232400 Rh5DG570600 Rh6CG188400 Rh7DG052000 Rh7DG402600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	222
AasI	GACNNNNNNGTC	1 cut(s)	197
Acc65I	GGTACC	1 cut(s)	161
AccB1I	GGYRCC	1 cut(s)	161
AccBSI	CCGCTC	1 cut(s)	180
AccI	GTMKAC	1 cut(s)	108
AciI	CCGC	1 cut(s)	178
AclWI	GGATC	2 cut(s)	169, 489
AfaI	GTAC	2 cut(s)	129, 163
AflII	CTTAAG	1 cut(s)	356
AgsI	TTSAA	7 cut(s)	26, 65, 79, 86, 172, 368, 449
AluBI	AGCT	2 cut(s)	249, 382
AluI	AGCT	2 cut(s)	249, 382
AlwI	GGATC	2 cut(s)	169, 489
AoxI	GGCC	1 cut(s)	243
ApeKI	GCWGC	1 cut(s)	284
ArsI	GACNNNNNNTTYG	2 cut(s)	404, 436
AseI	ATTAAT	1 cut(s)	210
Asp718I	GGTACC	1 cut(s)	161
AspS9I	GGNCC	1 cut(s)	243
AsuC2I	CCSGG	1 cut(s)	159
BanI	GGYRCC	1 cut(s)	161
BbvI	GCAGC	1 cut(s)	296
BcnI	CCSGG	1 cut(s)	159
BfaI	CTAG	1 cut(s)	462
BfrI	CTTAAG	1 cut(s)	356
BisI	GCNGC	1 cut(s)	285
BlsI	GCNGC	1 cut(s)	286
Bme1390I	CCNGG	1 cut(s)	159
BmgT120I	GGNCC	1 cut(s)	243
BmiI	GGNNCC	1 cut(s)	163
BmrFI	CCNGG	1 cut(s)	159
BpmI	CTGGAG	3 cut(s)	259, 329, 419
BpuMI	CCSGG	1 cut(s)	159
BsaJI	CCNNGG	1 cut(s)	36
BsaXI	ACNNNNNCTCC	2 cut(s)	65, 95
Bse1I	ACTGG	2 cut(s)	242, 402
Bse3DI	GCAATG	1 cut(s)	47
BseDI	CCNNGG	1 cut(s)	36
BseGI	GGATG	1 cut(s)	283
BseMI	GCAATG	1 cut(s)	47
BseMII	CTCAG	1 cut(s)	445
BseNI	ACTGG	2 cut(s)	242, 402
BseRI	GAGGAG	1 cut(s)	86
BseXI	GCAGC	1 cut(s)	296
BseYI	CCCAGC	1 cut(s)	249
BsgI	GTGCAG	1 cut(s)	357
BshFI	GGCC	1 cut(s)	245
BshNI	GGYRCC	1 cut(s)	161
BsiSI	CCGG	1 cut(s)	159
BslFI	GGGAC	1 cut(s)	141
BsmFI	GGGAC	1 cut(s)	141
BsmI	GAATGC	1 cut(s)	355
BsnI	GGCC	1 cut(s)	245
Bsp143I	GATC	5 cut(s)	28, 174, 304, 424, 481
BspACI	CCGC	1 cut(s)	178
BspANI	GGCC	1 cut(s)	245
BspCNI	CTCAG	1 cut(s)	444
BspLI	GGNNCC	1 cut(s)	163
BspPI	GGATC	2 cut(s)	169, 489
BspT107I	GGYRCC	1 cut(s)	161
BspTI	CTTAAG	1 cut(s)	356
BsrBI	CCGCTC	1 cut(s)	180
BsrDI	GCAATG	1 cut(s)	47
BsrI	ACTGG	2 cut(s)	242, 402
BssECI	CCNNGG	1 cut(s)	36
BssMI	GATC	5 cut(s)	28, 174, 304, 424, 481
BssT1I	CCWWGG	1 cut(s)	36
Bst4CI	ACNGT	1 cut(s)	113
BstAFI	CTTAAG	1 cut(s)	356
BstC8I	GCNNGC	5 cut(s)	11, 247, 289, 384, 489
BstDEI	CTNAG	1 cut(s)	431
BstF5I	GGATG	1 cut(s)	283
BstKTI	GATC	5 cut(s)	31, 177, 307, 427, 484
BstMBI	GATC	5 cut(s)	28, 174, 304, 424, 481
BstMWI	GCNNNNNNNGC	1 cut(s)	359
BstNSI	RCATGY	2 cut(s)	13, 491
BstSCI	CCNGG	1 cut(s)	157
BstV1I	GCAGC	1 cut(s)	296
BstX2I	RGATCY	1 cut(s)	174
BstYI	RGATCY	1 cut(s)	174
BsuRI	GGCC	1 cut(s)	245
BtsCI	GGATG	1 cut(s)	283
BtsI	GCAGTG	1 cut(s)	345
BtsIMutI	CAGTG	1 cut(s)	345
Cac8I	GCNNGC	5 cut(s)	11, 247, 289, 384, 489
Cfr13I	GGNCC	1 cut(s)	243
Csp6I	GTAC	2 cut(s)	128, 162
CviAII	CATG	6 cut(s)	6, 10, 124, 478, 488, 492
CviJI	RGCY	6 cut(s)	245, 249, 255, 287, 382, 435
CviKI_1	RGCY	6 cut(s)	245, 249, 255, 287, 382, 435
CviQI	GTAC	2 cut(s)	128, 162
DdeI	CTNAG	1 cut(s)	431
DpnI	GATC	5 cut(s)	30, 176, 306, 426, 483
DpnII	GATC	5 cut(s)	28, 174, 304, 424, 481
DrdI	GACNNNNNNGTC	1 cut(s)	197
DseDI	GACNNNNNNGTC	1 cut(s)	197
Eco130I	CCWWGG	1 cut(s)	36
EcoT14I	CCWWGG	1 cut(s)	36
EcoT22I	ATGCAT	2 cut(s)	11, 493
ErhI	CCWWGG	1 cut(s)	36
FaeI	CATG	6 cut(s)	9, 13, 127, 481, 491, 495
FaiI	YATR	8 cut(s)	7, 11, 125, 133, 222, 479, 489, 493
FaqI	GGGAC	1 cut(s)	141
FatI	CATG	6 cut(s)	5, 9, 123, 477, 487, 491
FblI	GTMKAC	1 cut(s)	108
Fnu4HI	GCNGC	1 cut(s)	285
FokI	GGATG	1 cut(s)	290
Fsp4HI	GCNGC	1 cut(s)	285
FspBI	CTAG	1 cut(s)	462
GluI	GCNGC	1 cut(s)	285
GsaI	CCCAGC	1 cut(s)	253
GsuI	CTGGAG	3 cut(s)	259, 329, 419
HaeIII	GGCC	1 cut(s)	245
HapII	CCGG	1 cut(s)	159
Hin1II	CATG	6 cut(s)	9, 13, 127, 481, 491, 495
HinfI	GANTC	2 cut(s)	120, 136
HpaII	CCGG	1 cut(s)	159
Hpy166II	GTNNAC	1 cut(s)	109
Hpy188III	TCNNGA	7 cut(s)	26, 86, 143, 172, 202, 308, 462
Hpy8I	GTNNAC	1 cut(s)	109
HpyAV	CCTTC	1 cut(s)	446
HpyCH4III	ACNGT	1 cut(s)	113
HpyCH4V	TGCA	4 cut(s)	9, 338, 418, 491
HpyF10VI	GCNNNNNNNGC	1 cut(s)	359
HpyF3I	CTNAG	1 cut(s)	431
Hsp92II	CATG	6 cut(s)	9, 13, 127, 481, 491, 495
KpnI	GGTACC	1 cut(s)	165
Kzo9I	GATC	5 cut(s)	28, 174, 304, 424, 481
LmnI	GCTCC	2 cut(s)	272, 474
LpnPI	CCDG	8 cut(s)	172, 223, 235, 259, 293, 301, 368, 383
Lsp1109I	GCAGC	1 cut(s)	296
MaeI	CTAG	1 cut(s)	462
MalI	GATC	5 cut(s)	30, 176, 306, 426, 483
MbiI	CCGCTC	1 cut(s)	180
MboI	GATC	5 cut(s)	28, 174, 304, 424, 481
MboII	GAAGA	1 cut(s)	419
MfeI	CAATTG	1 cut(s)	363
MflI	RGATCY	1 cut(s)	174
MluCI	AATT	4 cut(s)	16, 167, 207, 363
MnlI	CCTC	4 cut(s)	64, 234, 268, 337
Mph1103I	ATGCAT	2 cut(s)	11, 493
MseI	TTAA	2 cut(s)	210, 357
MspA1I	CMGCKG	2 cut(s)	249, 382
MspCI	CTTAAG	1 cut(s)	356
MspI	CCGG	1 cut(s)	159
MspR9I	CCNGG	1 cut(s)	159
MunI	CAATTG	1 cut(s)	363
Mva1269I	GAATGC	1 cut(s)	355
MwoI	GCNNNNNNNGC	1 cut(s)	359
NciI	CCSGG	1 cut(s)	159
NdeII	GATC	5 cut(s)	28, 174, 304, 424, 481
NlaIII	CATG	6 cut(s)	9, 13, 127, 481, 491, 495
NlaIV	GGNNCC	1 cut(s)	163
NsiI	ATGCAT	2 cut(s)	11, 493
NspI	RCATGY	2 cut(s)	13, 491
PaeI	GCATGC	2 cut(s)	13, 491
PctI	GAATGC	1 cut(s)	355
PfeI	GAWTC	2 cut(s)	120, 136
PkrI	GCNGC	1 cut(s)	286
PshBI	ATTAAT	1 cut(s)	210
PsiI	TTATAA	1 cut(s)	222
PspFI	CCCAGC	1 cut(s)	249
PspN4I	GGNNCC	1 cut(s)	163
PspPI	GGNCC	1 cut(s)	243
PsuI	RGATCY	1 cut(s)	174
PvuII	CAGCTG	2 cut(s)	249, 382
RsaI	GTAC	2 cut(s)	129, 163
RsaNI	GTAC	2 cut(s)	128, 162
SaqAI	TTAA	2 cut(s)	210, 357
SatI	GCNGC	1 cut(s)	285
Sau3AI	GATC	5 cut(s)	28, 174, 304, 424, 481
Sau96I	GGNCC	1 cut(s)	243
ScrFI	CCNGG	1 cut(s)	159
SetI	ASST	2 cut(s)	251, 384
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
SphI	GCATGC	2 cut(s)	13, 491
Sse9I	AATT	4 cut(s)	16, 167, 207, 363
SsiI	CCGC	1 cut(s)	178
SspMI	CTAG	1 cut(s)	462
StyD4I	CCNGG	1 cut(s)	157
StyI	CCWWGG	1 cut(s)	36
TaaI	ACNGT	1 cut(s)	113
TasI	AATT	4 cut(s)	16, 167, 207, 363
TfiI	GAWTC	2 cut(s)	120, 136
Tru1I	TTAA	2 cut(s)	210, 357
Tru9I	TTAA	2 cut(s)	210, 357
TscAI	CASTG	1 cut(s)	345
TseI	GCWGC	1 cut(s)	284
TspDTI	ATGAA	4 cut(s)	112, 128, 294, 332
TspGWI	ACGGA	1 cut(s)	337
TspRI	CASTG	1 cut(s)	345
Vha464I	CTTAAG	1 cut(s)	356
VspI	ATTAAT	1 cut(s)	210
XbaI	TCTAGA	1 cut(s)	461
XceI	RCATGY	2 cut(s)	13, 491
XmiI	GTMKAC	1 cut(s)	108
XspI	CTAG	1 cut(s)	462
Zsp2I	ATGCAT	2 cut(s)	11, 493

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.