Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001259

Physical Location & Seq

Genomic Coordinates Forward (+)

2563903 .. 2574577

Gene Structure 10675 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG036700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGGTTCATTTCTCTAGTGTCATGAAAACCATTCCGGTGCTTTTGCTTTGTTCTTTCATGACTCTCTTTTTTGAGCTTGCTTGTGCTGCACAACCTTATGATCTCCCTCCTTATAATATGTGCTCAGTTGTTACTAGTAACTCTACAGGCCACAATACGTTTCAAGAAAACCTTGAGATTTTACTCAATTTATTACCTTCCAACGCTTCTGTTTCCAAGTCGTACAATGGTTCAATTGGAAATGAGCCAGATAGAGTTTACGCTCTCTATATGTGCCTCGACTTTGTTTCAAACGATACATGTCACAAGTGCATAGAGGCAGCACAATCAAAAATTATGAAACTCTGTCCTAAGTCAAAAGAAGCAATTGTATGGGACGAATGGTGCCAGCTGCGCTACTCCAATGAGAATTTCTTTGGAAGATTAAATGTATCGGACAACAACGTTCTTCAAGTCAATCCACAGAATATTTCAGAGCAGCCAGAAAAGTTTAAGTCTGTTGTGAATCAAAAGCTGAGTGAACTCGCTAAGAAAGCGGCTTATAATGATTTTTCTCCTAAGATGTATGCTACTGGAGAATGTACTGCCGATTTATCTGAAGGTGACTGTGACAAATGCCTTCAGACAGCCACAGAAGACGTTTTAAGAGAATATTTCTTCTCCATGGGTGCAAGACTTTTCAGTCATAGTTGTTTTCTGAGCCTTTTTCACAAGGAAATTAGATCATTTATTGCAAATGCTTGCCAAAATCAGGTGGAAGGAAGGTGGGAGTCACACAAAATTAAAATCAAGCCTAGAAGGAAGAACTTCAAGAATGACCATCCTGAGGTGTGTGAAAAGGAACATGAAGAAGCAACTTTGAAGATTGAAGAGAAACTCATTAAGGATAAGGAAGCTGATTCATTCATCACATCGATATCCATGTCATGCATGCCTAATTGTGTTCAAGACCAACCTAAGGAGAAGTCATTACCCATTCCTTTTCAAGTGGAGGAGTTCAAGTTTCAAGATGCTTATTCTAAACTTGTCTACGATATTGGATTCATGGTCAAGTCAAGTCTGCTATGTTGTGCCACTTCCTATGCTAAGTCCAGCTCTTTCACTAGTAACTTCCTGGCTTCTCTCTTCTACTTGAGTGGTAGGCCAGGATTTAATCTATCAACTACCCTGTTTGTTTCACTGGATATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3403 Pkinase_Tyr Stress-antifung

Protein Analysis

396

Amino Acids

44.96

Weight (kDa)

5.84

Isoelectric Point (pI)

48.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	41 - 136	3.3e-20	Salt stress response/antifungal
Stress-antifung	PF01657	156 - 234	2.7e-08	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001259)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13320
fragaria_vesca	FvH4_5g25692
rosa_chinensis	RchiOBHm_Chr2g0137451 RchiOBHm_Chr2g0160931 RchiOBHm_Chr3g0448801 RchiOBHm_Chr3g0478501 RchiOBHm_Chr4g0401031 RchiOBHm_Chr4g0434691 RchiOBHm_Chr5g0023581 RchiOBHm_Chr5g0058431 RchiOBHm_Chr6g0250181 RchiOBHm_Chr6g0290461 RchiOBHm_Chr6g0300101 RchiOBHm_Chr6g0310791 RchiOBHm_Chr7g0197901 RchiOBHm_Chr7g0228641
rosa_multiflora	Rmu_co8205962.1_g000001 Rmu_sc0000423.1_g000017 Rmu_sc0000639.1_g000014 Rmu_sc0000753.1_g000043 Rmu_sc0001023.1_g000036 Rmu_sc0001492.1_g000004 Rmu_sc0002038.1_g000025 Rmu_sc0002761.1_g000007 Rmu_sc0002986.1_g000050 Rmu_sc0003383.1_g000016 Rmu_sc0003627.1_g000009 Rmu_sc0004345.1_g000005 Rmu_sc0006770.1_g000009 Rmu_sc0008421.1_g000002 Rmu_sc0020916.1_g000001 Rmu_sc0026853.1_g000001 Rmu_ssc0000225.1_g000001 Rmu_ssc0000446.1_g000021
rosa_roxburghii	Rroxscaffold_1G00014750 Rroxscaffold_1G00022410 Rroxscaffold_2G00095780 Rroxscaffold_2G00135550 Rroxscaffold_4G00325760 Rroxscaffold_4G00331060 Rroxscaffold_6G00402470 Rroxscaffold_6G00427850
rosa_samantha	Rh1DG013300 Rh2AG039600 Rh2AG319100 Rh2AG482400 Rh2AG563800 Rh3CG037400 Rh4DG115600 Rh5DG036700 Rh5DG232400 Rh5DG570600 Rh6CG188400 Rh7DG052000 Rh7DG402600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	114, 543
AasI	GACNNNNNNGTC	1 cut(s)	681
AccB1I	GGYRCC	1 cut(s)	384
AccI	GTMKAC	1 cut(s)	1029
AciI	CCGC	1 cut(s)	536
AclI	AACGTT	1 cut(s)	444
AcsI	RAATTY	1 cut(s)	409
AcuI	CTGAAG	2 cut(s)	605, 618
AfaI	GTAC	2 cut(s)	224, 583
AfiI	CCNNNNNNNGG	3 cut(s)	751, 826, 958
AflIII	ACRYGT	1 cut(s)	299
AhlI	ACTAGT	2 cut(s)	134, 1103
AjnI	CCWGG	2 cut(s)	1113, 1144
AjuI	GAANNNNNNNTTGG	2 cut(s)	395, 427
AluBI	AGCT	5 cut(s)	76, 391, 514, 896, 1095
AluI	AGCT	5 cut(s)	76, 391, 514, 896, 1095
Alw21I	GWGCWC	1 cut(s)	125
AoxI	GGCC	2 cut(s)	148, 1142
ApeKI	GCWGC	4 cut(s)	86, 320, 391, 478
ApoI	RAATTY	1 cut(s)	409
Asp700I	GAANNNNTTC	1 cut(s)	806
AspLEI	GCGC	1 cut(s)	396
AsuHPI	GGTGA	1 cut(s)	614
AxyI	CCTNAGG	2 cut(s)	825, 957
BanI	GGYRCC	1 cut(s)	384
BbsI	GAAGAC	1 cut(s)	642
Bbv12I	GWGCWC	1 cut(s)	125
BbvI	GCAGC	4 cut(s)	73, 332, 378, 490
BccI	CCATC	1 cut(s)	828
BciT130I	CCWGG	2 cut(s)	1115, 1146
BcuI	ACTAGT	2 cut(s)	134, 1103
BfaI	CTAG	5 cut(s)	15, 135, 795, 1104, 1189
BfmI	CTRYAG	1 cut(s)	144
BisI	GCNGC	5 cut(s)	87, 321, 392, 479, 537
BlsI	GCNGC	5 cut(s)	88, 322, 393, 480, 538
Bme1390I	CCNGG	2 cut(s)	1115, 1146
BmiI	GGNNCC	1 cut(s)	386
BmrFI	CCNGG	2 cut(s)	1115, 1146
BmsI	GCATC	1 cut(s)	1000
BpiI	GAAGAC	1 cut(s)	642
BpmI	CTGGAG	1 cut(s)	594
BpuEI	CTTGAG	2 cut(s)	194, 1153
Bsa29I	ATCGAT	1 cut(s)	914
BsaJI	CCNNGG	1 cut(s)	663
BsaWI	WCCGGW	1 cut(s)	34
BsaXI	ACNNNNNCTCC	2 cut(s)	986, 1016
Bsc4I	CCNNNNNNNGG	3 cut(s)	751, 826, 958
Bse1I	ACTGG	2 cut(s)	577, 1185
Bse21I	CCTNAGG	2 cut(s)	825, 957
BseBI	CCWGG	2 cut(s)	1115, 1146
BseCI	ATCGAT	1 cut(s)	914
BseDI	CCNNGG	1 cut(s)	663
BseGI	GGATG	1 cut(s)	820
BseLI	CCNNNNNNNGG	3 cut(s)	751, 826, 958
BseMII	CTCAG	4 cut(s)	138, 506, 689, 816
BseNI	ACTGG	2 cut(s)	577, 1185
BseRI	GAGGAG	1 cut(s)	1007
BseXI	GCAGC	4 cut(s)	73, 332, 378, 490
BsgI	GTGCAG	1 cut(s)	72
BshFI	GGCC	2 cut(s)	150, 1144
BshNI	GGYRCC	1 cut(s)	384
BshVI	ATCGAT	1 cut(s)	914
BsiHKAI	GWGCWC	1 cut(s)	125
BsiSI	CCGG	1 cut(s)	35
BslFI	GGGAC	1 cut(s)	389
BslI	CCNNNNNNNGG	3 cut(s)	751, 826, 958
BsmFI	GGGAC	1 cut(s)	389
BsnI	GGCC	2 cut(s)	150, 1144
Bsp1286I	GDGCHC	1 cut(s)	125
Bsp143I	GATC	2 cut(s)	100, 722
Bsp19I	CCATGG	1 cut(s)	663
BspACI	CCGC	1 cut(s)	536
BspANI	GGCC	2 cut(s)	150, 1144
BspCNI	CTCAG	4 cut(s)	137, 507, 690, 817
BspDI	ATCGAT	1 cut(s)	914
BspHI	TCATGA	2 cut(s)	21, 57
BspLI	GGNNCC	1 cut(s)	386
BspT107I	GGYRCC	1 cut(s)	384
BsrI	ACTGG	2 cut(s)	577, 1185
BssECI	CCNNGG	1 cut(s)	663
BssMI	GATC	2 cut(s)	100, 722
BssT1I	CCWWGG	1 cut(s)	663
Bst2UI	CCWGG	2 cut(s)	1115, 1146
Bst4CI	ACNGT	1 cut(s)	608
Bst6I	CTCTTC	2 cut(s)	864, 1130
BstC8I	GCNNGC	4 cut(s)	78, 389, 742, 932
BstDEI	CTNAG	9 cut(s)	124, 351, 515, 528, 558, 698, 825, 957, 1086
BstDSI	CCRYGG	1 cut(s)	663
BstF5I	GGATG	1 cut(s)	820
BstHHI	GCGC	1 cut(s)	396
BstKTI	GATC	2 cut(s)	103, 725
BstMBI	GATC	2 cut(s)	100, 722
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 393, 533
BstNI	CCWGG	2 cut(s)	1115, 1146
BstNSI	RCATGY	2 cut(s)	303, 934
BstSCI	CCNGG	2 cut(s)	1113, 1144
BstSFI	CTRYAG	1 cut(s)	144
BstV1I	GCAGC	4 cut(s)	73, 332, 378, 490
BstV2I	GAAGAC	1 cut(s)	642
Bsu15I	ATCGAT	1 cut(s)	914
Bsu36I	CCTNAGG	2 cut(s)	825, 957
BsuRI	GGCC	2 cut(s)	150, 1144
BsuTUI	ATCGAT	1 cut(s)	914
BtgI	CCRYGG	1 cut(s)	663
BtsCI	GGATG	1 cut(s)	820
BtsIMutI	CAGTG	1 cut(s)	1178
Cac8I	GCNNGC	4 cut(s)	78, 389, 742, 932
CciI	TCATGA	2 cut(s)	21, 57
CfoI	GCGC	1 cut(s)	396
ClaI	ATCGAT	1 cut(s)	914
Csp6I	GTAC	2 cut(s)	223, 582
CviAII	CATG	9 cut(s)	22, 58, 300, 664, 845, 922, 927, 931, 1045
CviQI	GTAC	2 cut(s)	223, 582
DdeI	CTNAG	9 cut(s)	124, 351, 515, 528, 558, 698, 825, 957, 1086
DpnI	GATC	2 cut(s)	102, 724
DpnII	GATC	2 cut(s)	100, 722
DrdI	GACNNNNNNGTC	1 cut(s)	681
DseDI	GACNNNNNNGTC	1 cut(s)	681
Eam1104I	CTCTTC	2 cut(s)	864, 1130
EarI	CTCTTC	2 cut(s)	864, 1130
Eco130I	CCWWGG	1 cut(s)	663
Eco32I	GATATC	2 cut(s)	918, 1186
Eco57I	CTGAAG	2 cut(s)	605, 618
Eco81I	CCTNAGG	2 cut(s)	825, 957
EcoRII	CCWGG	2 cut(s)	1113, 1144
EcoRV	GATATC	2 cut(s)	918, 1186
EcoT14I	CCWWGG	1 cut(s)	663
EcoT22I	ATGCAT	1 cut(s)	932
ErhI	CCWWGG	1 cut(s)	663
FaeI	CATG	9 cut(s)	25, 61, 303, 667, 848, 925, 930, 934, 1048
FalI	AAGNNNNNCTT	2 cut(s)	156, 188
FaqI	GGGAC	1 cut(s)	389
FatI	CATG	9 cut(s)	21, 57, 299, 663, 844, 921, 926, 930, 1044
FblI	GTMKAC	1 cut(s)	1029
Fnu4HI	GCNGC	5 cut(s)	87, 321, 392, 479, 537
FokI	GGATG	1 cut(s)	807
Fsp4HI	GCNGC	5 cut(s)	87, 321, 392, 479, 537
FspBI	CTAG	5 cut(s)	15, 135, 795, 1104, 1189
GlaI	GCGC	1 cut(s)	395
GluI	GCNGC	5 cut(s)	87, 321, 392, 479, 537
GsuI	CTGGAG	1 cut(s)	594
HaeIII	GGCC	2 cut(s)	150, 1144
HapII	CCGG	1 cut(s)	35
HhaI	GCGC	1 cut(s)	396
Hin1II	CATG	9 cut(s)	25, 61, 303, 667, 848, 925, 930, 934, 1048
Hin6I	GCGC	1 cut(s)	394
HinP1I	GCGC	1 cut(s)	394
HinfI	GANTC	5 cut(s)	61, 505, 770, 899, 1041
HpaII	CCGG	1 cut(s)	35
HphI	GGTGA	1 cut(s)	614
Hpy166II	GTNNAC	3 cut(s)	259, 521, 1030
Hpy188I	TCNGA	5 cut(s)	436, 475, 598, 624, 699
Hpy188III	TCNNGA	7 cut(s)	22, 58, 164, 811, 824, 947, 1007
Hpy8I	GTNNAC	3 cut(s)	259, 521, 1030
HpyAV	CCTTC	6 cut(s)	207, 593, 629, 752, 756, 792
HpyCH4III	ACNGT	1 cut(s)	608
HpyCH4IV	ACGT	3 cut(s)	158, 444, 639
HpyCH4V	TGCA	5 cut(s)	89, 312, 671, 734, 930
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 393, 533
HpyF3I	CTNAG	9 cut(s)	124, 351, 515, 528, 558, 698, 825, 957, 1086
HpySE526I	ACGT	3 cut(s)	158, 444, 639
Hsp92II	CATG	9 cut(s)	25, 61, 303, 667, 848, 925, 930, 934, 1048
HspAI	GCGC	1 cut(s)	394
Kzo9I	GATC	2 cut(s)	100, 722
Lsp1109I	GCAGC	4 cut(s)	73, 332, 378, 490
LweI	GCATC	1 cut(s)	1000
MaeI	CTAG	5 cut(s)	15, 135, 795, 1104, 1189
MaeII	ACGT	3 cut(s)	158, 444, 639
MaeIII	GTNAC	7 cut(s)	130, 137, 302, 602, 608, 771, 1106
MalI	GATC	2 cut(s)	102, 724
MboI	GATC	2 cut(s)	100, 722
MboII	GAAGA	9 cut(s)	432, 440, 647, 649, 814, 860, 874, 881, 1117
MfeI	CAATTG	2 cut(s)	234, 366
MhlI	GDGCHC	1 cut(s)	125
MluCI	AATT	8 cut(s)	187, 234, 333, 366, 409, 717, 780, 937
MlyI	GAGTC	2 cut(s)	55, 779
MmeI	TCCRAC	1 cut(s)	225
MnlI	CCTC	5 cut(s)	117, 287, 310, 820, 985
Mph1103I	ATGCAT	1 cut(s)	932
MroXI	GAANNNNTTC	1 cut(s)	806
MseI	TTAA	6 cut(s)	425, 492, 644, 783, 882, 1152
MslI	CAYNNNNRTG	1 cut(s)	35
MspA1I	CMGCKG	1 cut(s)	391
MspI	CCGG	1 cut(s)	35
MspR9I	CCNGG	2 cut(s)	1115, 1146
MunI	CAATTG	2 cut(s)	234, 366
MvaI	CCWGG	2 cut(s)	1115, 1146
MwoI	GCNNNNNNNGC	3 cut(s)	86, 393, 533
NcoI	CCATGG	1 cut(s)	663
NdeII	GATC	2 cut(s)	100, 722
NlaIII	CATG	9 cut(s)	25, 61, 303, 667, 848, 925, 930, 934, 1048
NlaIV	GGNNCC	1 cut(s)	386
NmuCI	GTSAC	4 cut(s)	302, 602, 608, 771
NsiI	ATGCAT	1 cut(s)	932
NspI	RCATGY	2 cut(s)	303, 934
PaeI	GCATGC	1 cut(s)	934
PagI	TCATGA	2 cut(s)	21, 57
PciI	ACATGT	1 cut(s)	299
PdmI	GAANNNNTTC	1 cut(s)	806
PfeI	GAWTC	3 cut(s)	505, 899, 1041
PkrI	GCNGC	5 cut(s)	88, 322, 393, 480, 538
PleI	GAGTC	2 cut(s)	55, 778
PpsI	GAGTC	2 cut(s)	55, 778
PscI	ACATGT	1 cut(s)	299
PsiI	TTATAA	2 cut(s)	114, 543
Psp1406I	AACGTT	1 cut(s)	444
Psp6I	CCWGG	2 cut(s)	1113, 1144
PspGI	CCWGG	2 cut(s)	1113, 1144
PspN4I	GGNNCC	1 cut(s)	386
PvuII	CAGCTG	1 cut(s)	391
RsaI	GTAC	2 cut(s)	224, 583
RsaNI	GTAC	2 cut(s)	223, 582
RseI	CAYNNNNRTG	1 cut(s)	35
SaqAI	TTAA	6 cut(s)	425, 492, 644, 783, 882, 1152
SatI	GCNGC	5 cut(s)	87, 321, 392, 479, 537
Sau3AI	GATC	2 cut(s)	100, 722
SchI	GAGTC	2 cut(s)	55, 779
ScrFI	CCNGG	2 cut(s)	1115, 1146
SduI	GDGCHC	1 cut(s)	125
SfaNI	GCATC	1 cut(s)	1000
SfcI	CTRYAG	1 cut(s)	144
SmiMI	CAYNNNNRTG	1 cut(s)	35
SmlI	CTYRAG	2 cut(s)	173, 1132
SmoI	CTYRAG	2 cut(s)	173, 1132
SpeI	ACTAGT	2 cut(s)	134, 1103
SphI	GCATGC	1 cut(s)	934
Sse9I	AATT	8 cut(s)	187, 234, 333, 366, 409, 717, 780, 937
SsiI	CCGC	1 cut(s)	536
SspI	AATATT	2 cut(s)	469, 653
SspMI	CTAG	5 cut(s)	15, 135, 795, 1104, 1189
StyD4I	CCNGG	2 cut(s)	1113, 1144
StyI	CCWWGG	1 cut(s)	663
TaaI	ACNGT	1 cut(s)	608
TaiI	ACGT	3 cut(s)	161, 447, 642
TaqI	TCGA	2 cut(s)	279, 914
TasI	AATT	8 cut(s)	187, 234, 333, 366, 409, 717, 780, 937
TatI	WGTACW	1 cut(s)	581
TauI	GCSGC	1 cut(s)	539
TfiI	GAWTC	3 cut(s)	505, 899, 1041
Tru1I	TTAA	6 cut(s)	425, 492, 644, 783, 882, 1152
Tru9I	TTAA	6 cut(s)	425, 492, 644, 783, 882, 1152
TscAI	CASTG	1 cut(s)	1185
TseFI	GTSAC	4 cut(s)	302, 602, 608, 771
TseI	GCWGC	4 cut(s)	86, 320, 391, 478
Tsp45I	GTSAC	4 cut(s)	302, 602, 608, 771
TspDTI	ATGAA	7 cut(s)	38, 46, 353, 861, 891, 895, 1033
TspRI	CASTG	1 cut(s)	1185
XapI	RAATTY	1 cut(s)	409
XceI	RCATGY	2 cut(s)	303, 934
XmiI	GTMKAC	1 cut(s)	1029
XmnI	GAANNNNTTC	1 cut(s)	806
XspI	CTAG	5 cut(s)	15, 135, 795, 1104, 1189
Zsp2I	ATGCAT	1 cut(s)	932

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.