Rh5DG570600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0001259
Physical Location & Seq
Reverse (-)
87685655 .. 87689079
3425 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG570600.1

Sequence Viewer

Length: 579 bp
ATGAACATCAAGAATGACCATCCTGAAGTGTGTGAAAAGGAACATGAAGAAGCCACTTTGAAGATTGAAGAGAAACTCATTAAGGACACGGAAGCTGATTCATTCATCACACCGATATCCATGTTATGCATGCCTAATTGTGTTCAAGATCAACCCAAGGAGAAGTCAATGCCCATTCCTTTTCAAGTGGAGGATTTCAAGTTTCGAGATGCTTATTCTAAACTTGTCTACGGTATTGGATTCATGATGGCTAGATGGGATGAGATTCTGTCTCTTCCTGTACAGAATCCTCCGACTTTGGAGTTTTCTGCTGCTGATCTTGTGTGGTCGAAGGTGGAAGGTTGGCGTGACAAGAAAGATAGAGTTGTTGTAATCCCCTATGCCAGAGTTGATGCTTTTGTGAGGGGTGAATCTTCGAACAAAGAGTGTCCAACAAGATTTCATGTTGAAGCGAGGCGGCGGCGGCAAGCAAAGACGAATTGCAAACCAATGGTTGATGGCATCCTTGAATATATTCTATATTGGTGTTCTTTTGGTCGTGATGACCTCAGGATGGGCGGCTCTATACCGACCCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

192

Amino Acids

22.28

Weight (kDa)

5.73

Isoelectric Point (pI)

46.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 228
AciI CCGC 4 cut(s) 457, 460, 463, 558
AcuI CTGAAG 1 cut(s) 45
AfaI GTAC 1 cut(s) 282
AfiI CCNNNNNNNGG 1 cut(s) 553
AgsI TTSAA 7 cut(s) 61, 68, 146, 185, 199, 449, 509
AluBI AGCT 1 cut(s) 95
AluI AGCT 1 cut(s) 95
Alw26I GTCTC 1 cut(s) 276
ApeKI GCWGC 1 cut(s) 311
Asp700I GAANNNNTTC 1 cut(s) 513
AsuHPI GGTGA 1 cut(s) 419
AsuII TTCGAA 1 cut(s) 416
AxyI CCTNAGG 1 cut(s) 548
BbvI GCAGC 1 cut(s) 298
BccI CCATC 5 cut(s) 27, 241, 249, 491, 547
BcoDI GTCTC 1 cut(s) 276
BfaI CTAG 1 cut(s) 252
BisI GCNGC 5 cut(s) 312, 458, 461, 464, 559
BlsI GCNGC 5 cut(s) 313, 459, 462, 465, 560
BmrI ACTGGG 1 cut(s) 568
BmsI GCATC 3 cut(s) 199, 382, 510
BmuI ACTGGG 1 cut(s) 568
Bpu14I TTCGAA 1 cut(s) 416
BsaJI CCNNGG 1 cut(s) 156
Bsc4I CCNNNNNNNGG 1 cut(s) 553
Bse1I ACTGG 1 cut(s) 574
Bse21I CCTNAGG 1 cut(s) 548
BseDI CCNNGG 1 cut(s) 156
BseGI GGATG 4 cut(s) 19, 265, 501, 558
BseLI CCNNNNNNNGG 1 cut(s) 553
BseMII CTCAG 1 cut(s) 562
BseNI ACTGG 1 cut(s) 574
BseXI GCAGC 1 cut(s) 298
BslI CCNNNNNNNGG 1 cut(s) 553
BsmAI GTCTC 1 cut(s) 276
Bsp119I TTCGAA 1 cut(s) 416
Bsp1407I TGTACA 1 cut(s) 280
Bsp143I GATC 2 cut(s) 148, 316
BspACI CCGC 4 cut(s) 457, 460, 463, 558
BspCNI CTCAG 1 cut(s) 561
BspHI TCATGA 1 cut(s) 243
BspT104I TTCGAA 1 cut(s) 416
BsrGI TGTACA 1 cut(s) 280
BsrI ACTGG 1 cut(s) 574
BssECI CCNNGG 1 cut(s) 156
BssMI GATC 2 cut(s) 148, 316
BssT1I CCWWGG 1 cut(s) 156
Bst4CI ACNGT 1 cut(s) 233
Bst6I CTCTTC 2 cut(s) 63, 279
BstAUI TGTACA 1 cut(s) 280
BstBI TTCGAA 1 cut(s) 416
BstC8I GCNNGC 2 cut(s) 131, 468
BstDEI CTNAG 1 cut(s) 548
BstF5I GGATG 4 cut(s) 19, 265, 501, 558
BstKTI GATC 2 cut(s) 151, 319
BstMAI GTCTC 1 cut(s) 276
BstMBI GATC 2 cut(s) 148, 316
BstMWI GCNNNNNNNGC 1 cut(s) 463
BstNSI RCATGY 1 cut(s) 133
BstV1I GCAGC 1 cut(s) 298
Bsu36I CCTNAGG 1 cut(s) 548
BtsCI GGATG 4 cut(s) 19, 265, 501, 558
Cac8I GCNNGC 2 cut(s) 131, 468
CciI TCATGA 1 cut(s) 243
Csp6I GTAC 1 cut(s) 281
CviAII CATG 5 cut(s) 44, 121, 130, 244, 443
CviJI RGCY 4 cut(s) 53, 95, 251, 561
CviKI_1 RGCY 4 cut(s) 53, 95, 251, 561
CviQI GTAC 1 cut(s) 281
DdeI CTNAG 1 cut(s) 548
DpnI GATC 2 cut(s) 150, 318
DpnII GATC 2 cut(s) 148, 316
Eam1104I CTCTTC 2 cut(s) 63, 279
EarI CTCTTC 2 cut(s) 63, 279
Eco130I CCWWGG 1 cut(s) 156
Eco32I GATATC 1 cut(s) 117
Eco57I CTGAAG 1 cut(s) 45
Eco81I CCTNAGG 1 cut(s) 548
EcoRV GATATC 1 cut(s) 117
EcoT14I CCWWGG 1 cut(s) 156
EcoT22I ATGCAT 1 cut(s) 131
ErhI CCWWGG 1 cut(s) 156
FaeI CATG 5 cut(s) 47, 124, 133, 247, 446
FatI CATG 5 cut(s) 43, 120, 129, 243, 442
FblI GTMKAC 1 cut(s) 228
Fnu4HI GCNGC 5 cut(s) 312, 458, 461, 464, 559
FokI GGATG 4 cut(s) 6, 272, 488, 565
Fsp4HI GCNGC 5 cut(s) 312, 458, 461, 464, 559
FspBI CTAG 1 cut(s) 252
GluI GCNGC 5 cut(s) 312, 458, 461, 464, 559
Hin1II CATG 5 cut(s) 47, 124, 133, 247, 446
HinfI GANTC 5 cut(s) 98, 240, 265, 286, 410
HphI GGTGA 1 cut(s) 419
Hpy166II GTNNAC 1 cut(s) 229
Hpy188I TCNGA 1 cut(s) 294
Hpy188III TCNNGA 7 cut(s) 10, 23, 146, 206, 244, 539, 550
Hpy8I GTNNAC 1 cut(s) 229
HpyAV CCTTC 2 cut(s) 325, 332
HpyCH4III ACNGT 1 cut(s) 233
HpyCH4V TGCA 2 cut(s) 129, 483
HpyF10VI GCNNNNNNNGC 1 cut(s) 463
HpyF3I CTNAG 1 cut(s) 548
Hsp92II CATG 5 cut(s) 47, 124, 133, 247, 446
Kzo9I GATC 2 cut(s) 148, 316
LpnPI CCDG 4 cut(s) 36, 291, 397, 535
Lsp1109I GCAGC 1 cut(s) 298
LweI GCATC 3 cut(s) 199, 382, 510
MaeI CTAG 1 cut(s) 252
MaeIII GTNAC 1 cut(s) 347
MalI GATC 2 cut(s) 150, 318
MboI GATC 2 cut(s) 148, 316
MboII GAAGA 5 cut(s) 59, 73, 80, 266, 405
MluCI AATT 2 cut(s) 136, 478
MmeI TCCRAC 2 cut(s) 317, 455
MnlI CCTC 5 cut(s) 184, 300, 396, 447, 557
Mph1103I ATGCAT 1 cut(s) 131
MroXI GAANNNNTTC 1 cut(s) 513
MseI TTAA 1 cut(s) 81
MwoI GCNNNNNNNGC 1 cut(s) 463
NdeII GATC 2 cut(s) 148, 316
NlaIII CATG 5 cut(s) 47, 124, 133, 247, 446
NmuCI GTSAC 1 cut(s) 347
NsiI ATGCAT 1 cut(s) 131
NspI RCATGY 1 cut(s) 133
NspV TTCGAA 1 cut(s) 416
PaeI GCATGC 1 cut(s) 133
PagI TCATGA 1 cut(s) 243
PdmI GAANNNNTTC 1 cut(s) 513
PfeI GAWTC 5 cut(s) 98, 240, 265, 286, 410
PkrI GCNGC 5 cut(s) 313, 459, 462, 465, 560
RsaI GTAC 1 cut(s) 282
RsaNI GTAC 1 cut(s) 281
SaqAI TTAA 1 cut(s) 81
SatI GCNGC 5 cut(s) 312, 458, 461, 464, 559
Sau3AI GATC 2 cut(s) 148, 316
SetI ASST 4 cut(s) 97, 336, 343, 549
SfaNI GCATC 3 cut(s) 199, 382, 510
SfuI TTCGAA 1 cut(s) 416
SphI GCATGC 1 cut(s) 133
Sse9I AATT 2 cut(s) 136, 478
SsiI CCGC 4 cut(s) 457, 460, 463, 558
SspMI CTAG 1 cut(s) 252
StyI CCWWGG 1 cut(s) 156
TaaI ACNGT 1 cut(s) 233
TaqI TCGA 3 cut(s) 205, 329, 416
TasI AATT 2 cut(s) 136, 478
TatI WGTACW 1 cut(s) 280
TauI GCSGC 4 cut(s) 460, 463, 466, 561
TfiI GAWTC 5 cut(s) 98, 240, 265, 286, 410
Tru1I TTAA 1 cut(s) 81
Tru9I TTAA 1 cut(s) 81
TseFI GTSAC 1 cut(s) 347
TseI GCWGC 1 cut(s) 311
Tsp45I GTSAC 1 cut(s) 347
TspDTI ATGAA 6 cut(s) 17, 60, 90, 94, 232, 431
TspGWI ACGGA 1 cut(s) 104
XceI RCATGY 1 cut(s) 133
XmiI GTMKAC 1 cut(s) 228
XmnI GAANNNNTTC 1 cut(s) 513
XspI CTAG 1 cut(s) 252
Zsp2I ATGCAT 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.