Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001259

Physical Location & Seq

Genomic Coordinates Reverse (-)

45565623 .. 45567472

Gene Structure 1850 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG319100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGATGAACACCAAGAATGACCATCCTGAGGTGTGTGAAAAGGAACATGAAGAAGCCACTTTGAAGATTGAAGAGAAACTCATTAAGGACACGGAAGCTGATTCATTTATCACACCGATATCCATGTCATGCATGCCTAATTGTGTTCAAGATCAACCCAAGGAGAAGTCAATGTCCATTCCTTTTCAAGTGGAAGAGTTCAAGTTTCAAGATGCTTATTCTAAACTTGTCTACGGTATTCGATTCATGAATGGGATCGAGGCGCCGAAGCTGGCCTGGTCTAGCTTCCCGAACTCGGATGAAGCCAAGAACGACGTCATTGGGTTGAGGAAGAAGGATGACGAGGGCGCCGGTTTAATTTGGGGTTTCTTGGAGCTTTGGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0008150 GO:0009653 GO:0009826 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0031984 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0060560 GO:0071840 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS Voltage_CLC

Protein Analysis

128

Amino Acids

14.68

Weight (kDa)

4.7

Isoelectric Point (pI)

41.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001259)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13320
fragaria_vesca	FvH4_5g25692
rosa_chinensis	RchiOBHm_Chr2g0137451 RchiOBHm_Chr2g0160931 RchiOBHm_Chr3g0448801 RchiOBHm_Chr3g0478501 RchiOBHm_Chr4g0401031 RchiOBHm_Chr4g0434691 RchiOBHm_Chr5g0023581 RchiOBHm_Chr5g0058431 RchiOBHm_Chr6g0250181 RchiOBHm_Chr6g0290461 RchiOBHm_Chr6g0300101 RchiOBHm_Chr6g0310791 RchiOBHm_Chr7g0197901 RchiOBHm_Chr7g0228641
rosa_multiflora	Rmu_co8205962.1_g000001 Rmu_sc0000423.1_g000017 Rmu_sc0000639.1_g000014 Rmu_sc0000753.1_g000043 Rmu_sc0001023.1_g000036 Rmu_sc0001492.1_g000004 Rmu_sc0002038.1_g000025 Rmu_sc0002761.1_g000007 Rmu_sc0002986.1_g000050 Rmu_sc0003383.1_g000016 Rmu_sc0003627.1_g000009 Rmu_sc0004345.1_g000005 Rmu_sc0006770.1_g000009 Rmu_sc0008421.1_g000002 Rmu_sc0020916.1_g000001 Rmu_sc0026853.1_g000001 Rmu_ssc0000225.1_g000001 Rmu_ssc0000446.1_g000021
rosa_roxburghii	Rroxscaffold_1G00014750 Rroxscaffold_1G00022410 Rroxscaffold_2G00095780 Rroxscaffold_2G00135550 Rroxscaffold_4G00325760 Rroxscaffold_4G00331060 Rroxscaffold_6G00402470 Rroxscaffold_6G00427850
rosa_samantha	Rh1DG013300 Rh2AG039600 Rh2AG319100 Rh2AG482400 Rh2AG563800 Rh3CG037400 Rh4DG115600 Rh5DG036700 Rh5DG232400 Rh5DG570600 Rh6CG188400 Rh7DG052000 Rh7DG402600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	318
AccB1I	GGYRCC	2 cut(s)	262, 347
AccI	GTMKAC	1 cut(s)	231
AclWI	GGATC	1 cut(s)	263
AcyI	GRCGYC	3 cut(s)	263, 315, 348
AfiI	CCNNNNNNNGG	2 cut(s)	28, 295
AgsI	TTSAA	6 cut(s)	64, 71, 149, 188, 202, 209
AjnI	CCWGG	1 cut(s)	275
AluBI	AGCT	4 cut(s)	98, 271, 285, 376
AluI	AGCT	4 cut(s)	98, 271, 285, 376
AlwI	GGATC	1 cut(s)	263
AoxI	GGCC	1 cut(s)	273
AspLEI	GCGC	2 cut(s)	265, 350
AxyI	CCTNAGG	1 cut(s)	27
BanI	GGYRCC	2 cut(s)	262, 347
BccI	CCATC	1 cut(s)	30
BciT130I	CCWGG	1 cut(s)	277
BfaI	CTAG	1 cut(s)	282
BfoI	RGCGCY	2 cut(s)	266, 351
Bme1390I	CCNGG	1 cut(s)	277
BmiI	GGNNCC	2 cut(s)	264, 349
BmrFI	CCNGG	1 cut(s)	277
BmsI	GCATC	1 cut(s)	202
BsaHI	GRCGYC	3 cut(s)	263, 315, 348
BsaJI	CCNNGG	1 cut(s)	159
Bsc4I	CCNNNNNNNGG	2 cut(s)	28, 295
Bse118I	RCCGGY	1 cut(s)	350
Bse21I	CCTNAGG	1 cut(s)	27
BseBI	CCWGG	1 cut(s)	277
BseDI	CCNNGG	1 cut(s)	159
BseGI	GGATG	3 cut(s)	22, 304, 343
BseLI	CCNNNNNNNGG	2 cut(s)	28, 295
BseMII	CTCAG	1 cut(s)	18
BshFI	GGCC	1 cut(s)	275
BshNI	GGYRCC	2 cut(s)	262, 347
BsiSI	CCGG	1 cut(s)	351
BslI	CCNNNNNNNGG	2 cut(s)	28, 295
BsnI	GGCC	1 cut(s)	275
Bsp143I	GATC	2 cut(s)	151, 255
BspANI	GGCC	1 cut(s)	275
BspCNI	CTCAG	1 cut(s)	19
BspHI	TCATGA	1 cut(s)	246
BspLI	GGNNCC	2 cut(s)	264, 349
BspPI	GGATC	1 cut(s)	263
BspT107I	GGYRCC	2 cut(s)	262, 347
BsrFI	RCCGGY	1 cut(s)	350
BssAI	RCCGGY	1 cut(s)	350
BssECI	CCNNGG	1 cut(s)	159
BssMI	GATC	2 cut(s)	151, 255
BssNI	GRCGYC	3 cut(s)	263, 315, 348
BssT1I	CCWWGG	1 cut(s)	159
Bst2UI	CCWGG	1 cut(s)	277
Bst4CI	ACNGT	1 cut(s)	236
Bst6I	CTCTTC	2 cut(s)	66, 189
BstACI	GRCGYC	3 cut(s)	263, 315, 348
BstC8I	GCNNGC	2 cut(s)	134, 273
BstDEI	CTNAG	1 cut(s)	27
BstF5I	GGATG	3 cut(s)	22, 304, 343
BstH2I	RGCGCY	2 cut(s)	266, 351
BstHHI	GCGC	2 cut(s)	265, 350
BstKTI	GATC	2 cut(s)	154, 258
BstMBI	GATC	2 cut(s)	151, 255
BstNI	CCWGG	1 cut(s)	277
BstNSI	RCATGY	1 cut(s)	136
BstSCI	CCNGG	1 cut(s)	275
Bsu36I	CCTNAGG	1 cut(s)	27
BsuRI	GGCC	1 cut(s)	275
BtsCI	GGATG	3 cut(s)	22, 304, 343
Cac8I	GCNNGC	2 cut(s)	134, 273
CciI	TCATGA	1 cut(s)	246
CfoI	GCGC	2 cut(s)	265, 350
Cfr10I	RCCGGY	1 cut(s)	350
CviAII	CATG	5 cut(s)	47, 124, 129, 133, 247
CviJI	RGCY	7 cut(s)	56, 98, 271, 275, 285, 305, 376
CviKI_1	RGCY	7 cut(s)	56, 98, 271, 275, 285, 305, 376
DdeI	CTNAG	1 cut(s)	27
DinI	GGCGCC	2 cut(s)	264, 349
DpnI	GATC	2 cut(s)	153, 257
DpnII	GATC	2 cut(s)	151, 255
Eam1104I	CTCTTC	2 cut(s)	66, 189
EarI	CTCTTC	2 cut(s)	66, 189
Eco130I	CCWWGG	1 cut(s)	159
Eco32I	GATATC	1 cut(s)	120
Eco81I	CCTNAGG	1 cut(s)	27
EcoRII	CCWGG	1 cut(s)	275
EcoRV	GATATC	1 cut(s)	120
EcoT14I	CCWWGG	1 cut(s)	159
EcoT22I	ATGCAT	1 cut(s)	134
EgeI	GGCGCC	2 cut(s)	264, 349
EheI	GGCGCC	2 cut(s)	264, 349
ErhI	CCWWGG	1 cut(s)	159
FaeI	CATG	5 cut(s)	50, 127, 132, 136, 250
FaiI	YATR	5 cut(s)	48, 125, 130, 134, 248
FatI	CATG	5 cut(s)	46, 123, 128, 132, 246
FblI	GTMKAC	1 cut(s)	231
FokI	GGATG	3 cut(s)	9, 311, 350
FspBI	CTAG	1 cut(s)	282
GlaI	GCGC	2 cut(s)	264, 349
HaeII	RGCGCY	2 cut(s)	266, 351
HaeIII	GGCC	1 cut(s)	275
HapII	CCGG	1 cut(s)	351
HhaI	GCGC	2 cut(s)	265, 350
Hin1I	GRCGYC	3 cut(s)	263, 315, 348
Hin1II	CATG	5 cut(s)	50, 127, 132, 136, 250
Hin6I	GCGC	2 cut(s)	263, 348
HinP1I	GCGC	2 cut(s)	263, 348
HinfI	GANTC	2 cut(s)	101, 243
HpaII	CCGG	1 cut(s)	351
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188I	TCNGA	1 cut(s)	298
Hpy188III	TCNNGA	5 cut(s)	26, 149, 209, 247, 289
Hpy8I	GTNNAC	1 cut(s)	232
Hpy99I	CGWCG	1 cut(s)	317
HpyAV	CCTTC	1 cut(s)	328
HpyCH4III	ACNGT	1 cut(s)	236
HpyCH4IV	ACGT	1 cut(s)	315
HpyCH4V	TGCA	1 cut(s)	132
HpyF3I	CTNAG	1 cut(s)	27
HpySE526I	ACGT	1 cut(s)	315
Hsp92I	GRCGYC	3 cut(s)	263, 315, 348
Hsp92II	CATG	5 cut(s)	50, 127, 132, 136, 250
HspAI	GCGC	2 cut(s)	263, 348
KasI	GGCGCC	2 cut(s)	262, 347
Kzo9I	GATC	2 cut(s)	151, 255
LmnI	GCTCC	1 cut(s)	373
LpnPI	CCDG	5 cut(s)	39, 257, 262, 289, 364
LweI	GCATC	1 cut(s)	202
MaeI	CTAG	1 cut(s)	282
MaeII	ACGT	1 cut(s)	315
MalI	GATC	2 cut(s)	153, 257
MboI	GATC	2 cut(s)	151, 255
MboII	GAAGA	5 cut(s)	62, 76, 83, 206, 343
MluCI	AATT	2 cut(s)	139, 357
Mly113I	GGCGCC	2 cut(s)	263, 348
MnlI	CCTC	4 cut(s)	22, 253, 321, 337
Mph1103I	ATGCAT	1 cut(s)	134
MseI	TTAA	3 cut(s)	84, 356, 385
MspI	CCGG	1 cut(s)	351
MspR9I	CCNGG	1 cut(s)	277
MvaI	CCWGG	1 cut(s)	277
NarI	GGCGCC	2 cut(s)	263, 348
NdeII	GATC	2 cut(s)	151, 255
NlaIII	CATG	5 cut(s)	50, 127, 132, 136, 250
NlaIV	GGNNCC	2 cut(s)	264, 349
NsiI	ATGCAT	1 cut(s)	134
NspI	RCATGY	1 cut(s)	136
PaeI	GCATGC	1 cut(s)	136
PagI	TCATGA	1 cut(s)	246
PfeI	GAWTC	2 cut(s)	101, 243
PluTI	GGCGCC	2 cut(s)	266, 351
Psp6I	CCWGG	1 cut(s)	275
PspGI	CCWGG	1 cut(s)	275
PspN4I	GGNNCC	2 cut(s)	264, 349
SaqAI	TTAA	3 cut(s)	84, 356, 385
Sau3AI	GATC	2 cut(s)	151, 255
ScrFI	CCNGG	1 cut(s)	277
SetI	ASST	6 cut(s)	33, 100, 273, 287, 318, 378
SfaNI	GCATC	1 cut(s)	202
SfoI	GGCGCC	2 cut(s)	264, 349
SphI	GCATGC	1 cut(s)	136
Sse9I	AATT	2 cut(s)	139, 357
SspDI	GGCGCC	2 cut(s)	262, 347
SspMI	CTAG	1 cut(s)	282
StyD4I	CCNGG	1 cut(s)	275
StyI	CCWWGG	1 cut(s)	159
TaaI	ACNGT	1 cut(s)	236
TaiI	ACGT	1 cut(s)	318
TaqI	TCGA	2 cut(s)	241, 258
TasI	AATT	2 cut(s)	139, 357
TfiI	GAWTC	2 cut(s)	101, 243
Tru1I	TTAA	3 cut(s)	84, 356, 385
Tru9I	TTAA	3 cut(s)	84, 356, 385
TspDTI	ATGAA	6 cut(s)	20, 63, 93, 235, 263, 315
TspGWI	ACGGA	1 cut(s)	107
XceI	RCATGY	1 cut(s)	136
XmiI	GTMKAC	1 cut(s)	231
XspI	CTAG	1 cut(s)	282
ZraI	GACGTC	1 cut(s)	316
Zsp2I	ATGCAT	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.