Rroxscaffold_1G00014750

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001259
Physical Location & Seq
Reverse (-)
18312933 .. 18314373
1441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00014750.1

Sequence Viewer

Length: 384 bp
ATGAAAGGTCTTCTTAACGAAAAATTTTTGCCTAGAGATTTTTCGATCAAGAATTACCCTCCCAAGGTTTTTGAGAAGAAGTTAAAGTCCGAAGAATTTTCTTTGCCCGTTGAGATTAATAGTTTATCCGGAGAAAAGCCAGAAAATTTTCCGATGGAAGAAACTCCACAAGAAATCATCCATGATGATCAAGAAGATGTTAAACATGAAATTGCTCATGAAGACATGGTTCTTTGTAATGGTGAAGTCTTGGATCCCGAAATAAATCATTCGAACCCGATGTCATTCAAGAATGCAACCTTGAGCGCCAAGAAGAATCTACTACGGTTGCCTATGAAAGCCAAAATGCATATGACAGACTCATCTATGGTGTTGGGTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

14.52

Weight (kDa)

5.36

Isoelectric Point (pI)

46.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 128
AclWI GGATC 2 cut(s) 248, 261
AcsI RAATTY 3 cut(s) 23, 95, 145
AfiI CCNNNNNNNGG 1 cut(s) 64
AgsI TTSAA 1 cut(s) 289
AlwI GGATC 2 cut(s) 248, 261
Aor13HI TCCGGA 1 cut(s) 128
ApoI RAATTY 3 cut(s) 23, 95, 145
ArsI GACNNNNNNTTYG 2 cut(s) 266, 298
AseI ATTAAT 1 cut(s) 117
Asp700I GAANNNNTTC 1 cut(s) 147
AspLEI GCGC 1 cut(s) 308
AsuHPI GGTGA 1 cut(s) 254
AsuII TTCGAA 1 cut(s) 272
BamHI GGATCC 1 cut(s) 253
BbsI GAAGAC 2 cut(s) 2, 228
BccI CCATC 1 cut(s) 148
BclI TGATCA 1 cut(s) 187
BfaI CTAG 1 cut(s) 33
BfoI RGCGCY 1 cut(s) 309
BmiI GGNNCC 1 cut(s) 255
BpiI GAAGAC 2 cut(s) 2, 228
Bpu14I TTCGAA 1 cut(s) 272
BpuEI CTTGAG 1 cut(s) 322
BsaJI CCNNGG 1 cut(s) 63
BsaWI WCCGGW 1 cut(s) 128
Bsc4I CCNNNNNNNGG 1 cut(s) 64
BseAI TCCGGA 1 cut(s) 128
BseDI CCNNGG 1 cut(s) 63
BseGI GGATG 1 cut(s) 177
BseLI CCNNNNNNNGG 1 cut(s) 64
BsiSI CCGG 1 cut(s) 129
BslI CCNNNNNNNGG 1 cut(s) 64
BsmI GAATGC 1 cut(s) 298
Bsp119I TTCGAA 1 cut(s) 272
Bsp13I TCCGGA 1 cut(s) 128
Bsp143I GATC 3 cut(s) 45, 187, 253
BspEI TCCGGA 1 cut(s) 128
BspHI TCATGA 2 cut(s) 217, 380
BspLI GGNNCC 1 cut(s) 255
BspPI GGATC 2 cut(s) 248, 261
BspT104I TTCGAA 1 cut(s) 272
BssECI CCNNGG 1 cut(s) 63
BssMI GATC 3 cut(s) 45, 187, 253
BssT1I CCWWGG 1 cut(s) 63
Bst4CI ACNGT 1 cut(s) 327
BstBI TTCGAA 1 cut(s) 272
BstF5I GGATG 1 cut(s) 177
BstH2I RGCGCY 1 cut(s) 309
BstHHI GCGC 1 cut(s) 308
BstKTI GATC 3 cut(s) 48, 190, 256
BstMBI GATC 3 cut(s) 45, 187, 253
BstV2I GAAGAC 2 cut(s) 2, 228
BstX2I RGATCY 1 cut(s) 253
BstYI RGATCY 1 cut(s) 253
BtsCI GGATG 1 cut(s) 177
CciI TCATGA 2 cut(s) 217, 380
CfoI GCGC 1 cut(s) 308
CviAII CATG 5 cut(s) 182, 206, 218, 226, 381
CviJI RGCY 2 cut(s) 139, 341
CviKI_1 RGCY 2 cut(s) 139, 341
DpnI GATC 3 cut(s) 47, 189, 255
DpnII GATC 3 cut(s) 45, 187, 253
Eco130I CCWWGG 1 cut(s) 63
EcoT14I CCWWGG 1 cut(s) 63
EcoT22I ATGCAT 1 cut(s) 351
ErhI CCWWGG 1 cut(s) 63
FaeI CATG 5 cut(s) 185, 209, 221, 229, 384
FaiI YATR 9 cut(s) 183, 207, 219, 227, 335, 351, 353, 368, 382
FalI AAGNNNNNCTT 1 cut(s) 29
FatI CATG 5 cut(s) 181, 205, 217, 225, 380
FauNDI CATATG 1 cut(s) 351
FbaI TGATCA 1 cut(s) 187
FokI GGATG 1 cut(s) 164
FspBI CTAG 1 cut(s) 33
GlaI GCGC 1 cut(s) 307
HaeII RGCGCY 1 cut(s) 309
HapII CCGG 1 cut(s) 129
HhaI GCGC 1 cut(s) 308
Hin1II CATG 5 cut(s) 185, 209, 221, 229, 384
Hin6I GCGC 1 cut(s) 306
HinP1I GCGC 1 cut(s) 306
HinfI GANTC 2 cut(s) 316, 359
HpaII CCGG 1 cut(s) 129
HphI GGTGA 1 cut(s) 254
Hpy188I TCNGA 2 cut(s) 91, 153
Hpy188III TCNNGA 7 cut(s) 49, 129, 191, 218, 257, 289, 381
HpyCH4III ACNGT 1 cut(s) 327
HpyCH4V TGCA 2 cut(s) 296, 349
Hsp92II CATG 5 cut(s) 185, 209, 221, 229, 384
HspAI GCGC 1 cut(s) 306
Kpn2I TCCGGA 1 cut(s) 128
Ksp22I TGATCA 1 cut(s) 187
Kzo9I GATC 3 cut(s) 45, 187, 253
LpnPI CCDG 2 cut(s) 142, 153
MaeI CTAG 1 cut(s) 33
MalI GATC 3 cut(s) 47, 189, 255
MboI GATC 3 cut(s) 45, 187, 253
MboII GAAGA 6 cut(s) 88, 104, 170, 206, 233, 325
MflI RGATCY 1 cut(s) 253
MluCI AATT 5 cut(s) 23, 52, 95, 145, 210
MlyI GAGTC 1 cut(s) 353
MnlI CCTC 1 cut(s) 69
Mph1103I ATGCAT 1 cut(s) 351
MroI TCCGGA 1 cut(s) 128
MroXI GAANNNNTTC 1 cut(s) 147
MseI TTAA 4 cut(s) 15, 83, 117, 201
MspI CCGG 1 cut(s) 129
Mva1269I GAATGC 1 cut(s) 298
NdeI CATATG 1 cut(s) 351
NdeII GATC 3 cut(s) 45, 187, 253
NlaIII CATG 5 cut(s) 185, 209, 221, 229, 384
NlaIV GGNNCC 1 cut(s) 255
NsiI ATGCAT 1 cut(s) 351
NspV TTCGAA 1 cut(s) 272
PagI TCATGA 2 cut(s) 217, 380
PctI GAATGC 1 cut(s) 298
PdmI GAANNNNTTC 1 cut(s) 147
PfeI GAWTC 1 cut(s) 316
PleI GAGTC 1 cut(s) 353
PpsI GAGTC 1 cut(s) 353
PshBI ATTAAT 1 cut(s) 117
PspN4I GGNNCC 1 cut(s) 255
PsuI RGATCY 1 cut(s) 253
SaqAI TTAA 4 cut(s) 15, 83, 117, 201
Sau3AI GATC 3 cut(s) 45, 187, 253
SchI GAGTC 1 cut(s) 353
SetI ASST 3 cut(s) 10, 69, 302
SfuI TTCGAA 1 cut(s) 272
SmlI CTYRAG 1 cut(s) 301
SmoI CTYRAG 1 cut(s) 301
Sse9I AATT 5 cut(s) 23, 52, 95, 145, 210
SspMI CTAG 1 cut(s) 33
StyI CCWWGG 1 cut(s) 63
TaaI ACNGT 1 cut(s) 327
TaqI TCGA 2 cut(s) 44, 272
TasI AATT 5 cut(s) 23, 52, 95, 145, 210
TfiI GAWTC 1 cut(s) 316
Tru1I TTAA 4 cut(s) 15, 83, 117, 201
Tru9I TTAA 4 cut(s) 15, 83, 117, 201
TspDTI ATGAA 5 cut(s) 17, 222, 234, 350, 369
VspI ATTAAT 1 cut(s) 117
XapI RAATTY 3 cut(s) 23, 95, 145
XmnI GAANNNNTTC 1 cut(s) 147
XspI CTAG 1 cut(s) 33
Zsp2I ATGCAT 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.