Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002761.1

Orthogroup ID

OG0001259

Physical Location & Seq

Genomic Coordinates Forward (+)

11852 .. 12929

Gene Structure 1078 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002761.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

atggctgtgtccgtaattgctagtggattctatctcatctcatatggctttccacgcttgacggagcctcttactatcgtgttcacgctacccgcatcatttggtatcagagcaggtatcgcccgctccttagcagacgacgatccaagggagaagttcactaccaccaacgtcaacgacgctggtcgtagagtatctatcaaaaagattttcattgatgaggaacatgccaagagatttgccccaggacaacctcatcaatccaaaaaaaaaaatcatggaacgttggatattcacaacgcccttacgacgacttccgaactatatgtatcatcaacgacaatgtatgcttggtgggagtcgcacaaaattaaaatcaagcctggaaggaagaacatcaagaatgaccatcctgaggtgtgtgaaaaggaacatgaagaagctactttgaagattgaagagaaactcattaaggacaaggaagctgattcattcatcacatcgatatccatgtcatgcatgcctaattgtgttcaagatcaacccaaggagaagtcaatgcccatttcttttcaagtggaggagttcaagtttcaagatgcttattctaaacttgtctacggtattggattcatggtgatgctttttaatttagagaatattgaagttgatggcttatcatgttttattccttctaatgatcgagctacatgcaagatgaactcgaggtcgagttcttttcaagtggaggagactaatgtaagacgagattttagccaatttcaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

262

Amino Acids

29.82

Weight (kDa)

6.67

Isoelectric Point (pI)

50.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001259)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13320
fragaria_vesca	FvH4_5g25692
rosa_chinensis	RchiOBHm_Chr2g0137451 RchiOBHm_Chr2g0160931 RchiOBHm_Chr3g0448801 RchiOBHm_Chr3g0478501 RchiOBHm_Chr4g0401031 RchiOBHm_Chr4g0434691 RchiOBHm_Chr5g0023581 RchiOBHm_Chr5g0058431 RchiOBHm_Chr6g0250181 RchiOBHm_Chr6g0290461 RchiOBHm_Chr6g0300101 RchiOBHm_Chr6g0310791 RchiOBHm_Chr7g0197901 RchiOBHm_Chr7g0228641
rosa_multiflora	Rmu_co8205962.1_g000001 Rmu_sc0000423.1_g000017 Rmu_sc0000639.1_g000014 Rmu_sc0000753.1_g000043 Rmu_sc0001023.1_g000036 Rmu_sc0001492.1_g000004 Rmu_sc0002038.1_g000025 Rmu_sc0002761.1_g000007 Rmu_sc0002986.1_g000050 Rmu_sc0003383.1_g000016 Rmu_sc0003627.1_g000009 Rmu_sc0004345.1_g000005 Rmu_sc0006770.1_g000009 Rmu_sc0008421.1_g000002 Rmu_sc0020916.1_g000001 Rmu_sc0026853.1_g000001 Rmu_ssc0000225.1_g000001 Rmu_ssc0000446.1_g000021
rosa_roxburghii	Rroxscaffold_1G00014750 Rroxscaffold_1G00022410 Rroxscaffold_2G00095780 Rroxscaffold_2G00135550 Rroxscaffold_4G00325760 Rroxscaffold_4G00331060 Rroxscaffold_6G00402470 Rroxscaffold_6G00427850
rosa_samantha	Rh1DG013300 Rh2AG039600 Rh2AG319100 Rh2AG482400 Rh2AG563800 Rh3CG037400 Rh4DG115600 Rh5DG036700 Rh5DG232400 Rh5DG570600 Rh6CG188400 Rh7DG052000 Rh7DG402600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	104
AccBSI	CCGCTC	1 cut(s)	126
AccI	GTMKAC	1 cut(s)	618
AciI	CCGC	2 cut(s)	93, 124
AclI	AACGTT	1 cut(s)	284
AclWI	GGATC	1 cut(s)	137
AfiI	CCNNNNNNNGG	1 cut(s)	415
AgsI	TTSAA	9 cut(s)	451, 458, 536, 575, 589, 596, 665, 743, 785
AjnI	CCWGG	2 cut(s)	244, 382
AluBI	AGCT	3 cut(s)	443, 485, 707
AluI	AGCT	3 cut(s)	443, 485, 707
Alw26I	GTCTC	1 cut(s)	746
AlwI	GGATC	1 cut(s)	137
Ama87I	CYCGRG	1 cut(s)	724
AsuHPI	GGTGA	1 cut(s)	649
AvaI	CYCGRG	1 cut(s)	724
AxyI	CCTNAGG	1 cut(s)	414
BccI	CCATC	2 cut(s)	417, 665
BcgI	CGANNNNNNTGC	2 cut(s)	693, 727
BciT130I	CCWGG	2 cut(s)	246, 384
BcoDI	GTCTC	1 cut(s)	746
BfaI	CTAG	1 cut(s)	21
BfuAI	ACCTGC	1 cut(s)	104
Bme1390I	CCNGG	2 cut(s)	246, 384
BmeT110I	CYCGRG	1 cut(s)	724
BmiI	GGNNCC	1 cut(s)	66
BmrFI	CCNGG	2 cut(s)	246, 384
BmsI	GCATC	3 cut(s)	104, 589, 630
BoxI	GACNNNNGTC	1 cut(s)	183
Bpu10I	CCTNAGC	1 cut(s)	130
Bsa29I	ATCGAT	1 cut(s)	503
BsaJI	CCNNGG	3 cut(s)	146, 244, 546
BsaXI	ACNNNNNCTCC	2 cut(s)	575, 605
Bsc4I	CCNNNNNNNGG	1 cut(s)	415
Bse21I	CCTNAGG	1 cut(s)	414
BseBI	CCWGG	2 cut(s)	246, 384
BseCI	ATCGAT	1 cut(s)	503
BseDI	CCNNGG	3 cut(s)	146, 244, 546
BseGI	GGATG	1 cut(s)	409
BseLI	CCNNNNNNNGG	1 cut(s)	415
BseMII	CTCAG	1 cut(s)	405
BseRI	GAGGAG	2 cut(s)	596, 764
BshVI	ATCGAT	1 cut(s)	503
BsiHKCI	CYCGRG	1 cut(s)	724
BslI	CCNNNNNNNGG	1 cut(s)	415
BsmAI	GTCTC	1 cut(s)	746
BsoBI	CYCGRG	1 cut(s)	724
Bsp143I	GATC	3 cut(s)	142, 538, 700
BspACI	CCGC	2 cut(s)	93, 124
BspCNI	CTCAG	1 cut(s)	406
BspDI	ATCGAT	1 cut(s)	503
BspLI	GGNNCC	1 cut(s)	66
BspMI	ACCTGC	1 cut(s)	104
BspPI	GGATC	1 cut(s)	137
BsrBI	CCGCTC	1 cut(s)	126
BssECI	CCNNGG	3 cut(s)	146, 244, 546
BssMI	GATC	3 cut(s)	142, 538, 700
BssT1I	CCWWGG	2 cut(s)	146, 546
Bst2UI	CCWGG	2 cut(s)	246, 384
Bst4CI	ACNGT	1 cut(s)	623
Bst6I	CTCTTC	1 cut(s)	453
BstC8I	GCNNGC	2 cut(s)	124, 521
BstDEI	CTNAG	2 cut(s)	130, 414
BstF5I	GGATG	1 cut(s)	409
BstKTI	GATC	3 cut(s)	145, 541, 703
BstMAI	GTCTC	1 cut(s)	746
BstMBI	GATC	3 cut(s)	142, 538, 700
BstMWI	GCNNNNNNNGC	2 cut(s)	54, 119
BstNI	CCWGG	2 cut(s)	246, 384
BstNSI	RCATGY	3 cut(s)	230, 523, 714
BstPAI	GACNNNNGTC	1 cut(s)	183
BstSCI	CCNGG	2 cut(s)	244, 382
Bsu15I	ATCGAT	1 cut(s)	503
Bsu36I	CCTNAGG	1 cut(s)	414
BsuTUI	ATCGAT	1 cut(s)	503
BtsCI	GGATG	1 cut(s)	409
BveI	ACCTGC	1 cut(s)	104
Cac8I	GCNNGC	2 cut(s)	124, 521
ClaI	ATCGAT	1 cut(s)	503
CseI	GACGC	1 cut(s)	188
CviAII	CATG	9 cut(s)	227, 278, 434, 511, 516, 520, 634, 681, 711
CviJI	RGCY	9 cut(s)	5, 48, 67, 382, 443, 485, 675, 707, 777
CviKI_1	RGCY	9 cut(s)	5, 48, 67, 382, 443, 485, 675, 707, 777
DdeI	CTNAG	2 cut(s)	130, 414
DpnI	GATC	3 cut(s)	144, 540, 702
DpnII	GATC	3 cut(s)	142, 538, 700
Eam1104I	CTCTTC	1 cut(s)	453
EarI	CTCTTC	1 cut(s)	453
Eco130I	CCWWGG	2 cut(s)	146, 546
Eco32I	GATATC	1 cut(s)	507
Eco81I	CCTNAGG	1 cut(s)	414
Eco88I	CYCGRG	1 cut(s)	724
EcoRII	CCWGG	2 cut(s)	244, 382
EcoRV	GATATC	1 cut(s)	507
EcoT14I	CCWWGG	2 cut(s)	146, 546
EcoT22I	ATGCAT	1 cut(s)	521
ErhI	CCWWGG	2 cut(s)	146, 546
FaeI	CATG	9 cut(s)	230, 281, 437, 514, 519, 523, 637, 684, 714
FatI	CATG	9 cut(s)	226, 277, 433, 510, 515, 519, 633, 680, 710
FauI	CCCGC	2 cut(s)	100, 131
FauNDI	CATATG	1 cut(s)	43
FblI	GTMKAC	1 cut(s)	618
FokI	GGATG	1 cut(s)	396
FspBI	CTAG	1 cut(s)	21
HgaI	GACGC	1 cut(s)	188
Hin1II	CATG	9 cut(s)	230, 281, 437, 514, 519, 523, 637, 684, 714
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HinfI	GANTC	4 cut(s)	27, 359, 488, 630
HphI	GGTGA	1 cut(s)	649
Hpy166II	GTNNAC	4 cut(s)	84, 159, 175, 619
Hpy188I	TCNGA	2 cut(s)	110, 319
Hpy188III	TCNNGA	4 cut(s)	400, 413, 536, 596
Hpy8I	GTNNAC	4 cut(s)	84, 159, 175, 619
Hpy99I	CGWCG	3 cut(s)	143, 182, 313
HpyAV	CCTTC	2 cut(s)	381, 702
HpyCH4III	ACNGT	1 cut(s)	623
HpyCH4IV	ACGT	2 cut(s)	171, 284
HpyCH4V	TGCA	2 cut(s)	519, 714
HpyF10VI	GCNNNNNNNGC	2 cut(s)	54, 119
HpyF3I	CTNAG	2 cut(s)	130, 414
HpySE526I	ACGT	2 cut(s)	171, 284
Hsp92II	CATG	9 cut(s)	230, 281, 437, 514, 519, 523, 637, 684, 714
Kzo9I	GATC	3 cut(s)	142, 538, 700
LmnI	GCTCC	2 cut(s)	64, 131
LpnPI	CCDG	7 cut(s)	99, 168, 231, 258, 369, 396, 426
LweI	GCATC	3 cut(s)	104, 589, 630
MaeI	CTAG	1 cut(s)	21
MaeII	ACGT	2 cut(s)	171, 284
MalI	GATC	3 cut(s)	144, 540, 702
MbiI	CCGCTC	1 cut(s)	126
MboI	GATC	3 cut(s)	142, 538, 700
MboII	GAAGA	4 cut(s)	403, 449, 463, 470
MluCI	AATT	5 cut(s)	15, 369, 526, 649, 779
MlyI	GAGTC	1 cut(s)	368
MmeI	TCCRAC	1 cut(s)	267
MnlI	CCTC	7 cut(s)	78, 214, 264, 409, 574, 720, 742
Mph1103I	ATGCAT	1 cut(s)	521
MseI	TTAA	3 cut(s)	372, 471, 648
MslI	CAYNNNNRTG	1 cut(s)	638
MspR9I	CCNGG	2 cut(s)	246, 384
MvaI	CCWGG	2 cut(s)	246, 384
MwoI	GCNNNNNNNGC	2 cut(s)	54, 119
NdeI	CATATG	1 cut(s)	43
NdeII	GATC	3 cut(s)	142, 538, 700
NlaIII	CATG	9 cut(s)	230, 281, 437, 514, 519, 523, 637, 684, 714
NlaIV	GGNNCC	1 cut(s)	66
NsiI	ATGCAT	1 cut(s)	521
NspI	RCATGY	3 cut(s)	230, 523, 714
PaeI	GCATGC	1 cut(s)	523
PaeR7I	CTCGAG	1 cut(s)	724
PfeI	GAWTC	3 cut(s)	27, 488, 630
PleI	GAGTC	1 cut(s)	367
PpsI	GAGTC	1 cut(s)	367
PshAI	GACNNNNGTC	1 cut(s)	183
Psp1406I	AACGTT	1 cut(s)	284
Psp6I	CCWGG	2 cut(s)	244, 382
PspGI	CCWGG	2 cut(s)	244, 382
PspN4I	GGNNCC	1 cut(s)	66
PspXI	VCTCGAGB	1 cut(s)	724
RseI	CAYNNNNRTG	1 cut(s)	638
SaqAI	TTAA	3 cut(s)	372, 471, 648
Sau3AI	GATC	3 cut(s)	142, 538, 700
SchI	GAGTC	1 cut(s)	368
ScrFI	CCNGG	2 cut(s)	246, 384
SetI	ASST	9 cut(s)	118, 174, 256, 287, 420, 445, 487, 709, 731
SfaNI	GCATC	3 cut(s)	104, 589, 630
Sfr274I	CTCGAG	1 cut(s)	724
SlaI	CTCGAG	1 cut(s)	724
SmiMI	CAYNNNNRTG	1 cut(s)	638
SmlI	CTYRAG	1 cut(s)	724
SmoI	CTYRAG	1 cut(s)	724
SphI	GCATGC	1 cut(s)	523
Sse9I	AATT	5 cut(s)	15, 369, 526, 649, 779
SsiI	CCGC	2 cut(s)	93, 124
SspI	AATATT	1 cut(s)	661
SspMI	CTAG	1 cut(s)	21
StyD4I	CCNGG	2 cut(s)	244, 382
StyI	CCWWGG	2 cut(s)	146, 546
TaaI	ACNGT	1 cut(s)	623
TaiI	ACGT	2 cut(s)	174, 287
TaqI	TCGA	4 cut(s)	503, 703, 725, 731
TasI	AATT	5 cut(s)	15, 369, 526, 649, 779
TfiI	GAWTC	3 cut(s)	27, 488, 630
Tru1I	TTAA	3 cut(s)	372, 471, 648
Tru9I	TTAA	3 cut(s)	372, 471, 648
TspDTI	ATGAA	6 cut(s)	202, 450, 480, 484, 622, 734
TspGWI	ACGGA	1 cut(s)	77
XceI	RCATGY	3 cut(s)	230, 523, 714
XhoI	CTCGAG	1 cut(s)	724
XmiI	GTMKAC	1 cut(s)	618
XspI	CTAG	1 cut(s)	21
Zsp2I	ATGCAT	1 cut(s)	521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.