Rroxscaffold_4G00331060

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
64839273 .. 64840631
1359 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_4G00331060.1

Sequence Viewer

Length: 363 bp
ATGGAAGAAGCTCCACAAGAAATCATCCATGATAACCAAGAAGAGGTTAAAGATGAAATTGTTCATGTAGACATGGTTATTAATAATGAAGAAGTATTGGAGCCTGAAATTAATCATTTAGAACTAGATGTCATTCAAGAATGCAACCTTGAGAGCCGAGAAGAATCTACTAAGGTTGCCTATGAAAGCCAAAATGCATATGACAGACTCATCTATGGTGTTGGGTTCATGATTACGCCATCGAATATGCAGAAGATCCGGTCAATAATCCACGGGTTCAATTGTCTAATTTTTTCTGGGTTCTTTTGTCTACCTATTCTTGTCCTTTATTCAAGAGGAACTCAAGGGCGAGTTCTTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

13.82

Weight (kDa)

4.48

Isoelectric Point (pI)

54.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 69, 310
AclWI GGATC 1 cut(s) 250
AfiI CCNNNNNNNGG 1 cut(s) 43
AgsI TTSAA 3 cut(s) 137, 280, 333
AluBI AGCT 1 cut(s) 11
AluI AGCT 1 cut(s) 11
AlwI GGATC 1 cut(s) 250
AseI ATTAAT 2 cut(s) 81, 111
Asp700I GAANNNNTTC 1 cut(s) 60
BccI CCATC 1 cut(s) 247
BfaI CTAG 1 cut(s) 125
BmiI GGNNCC 1 cut(s) 102
BpuEI CTTGAG 2 cut(s) 170, 327
BsaJI CCNNGG 1 cut(s) 271
BsaWI WCCGGW 1 cut(s) 258
Bsc4I CCNNNNNNNGG 1 cut(s) 43
BseDI CCNNGG 1 cut(s) 271
BseGI GGATG 1 cut(s) 24
BseLI CCNNNNNNNGG 1 cut(s) 43
BsiSI CCGG 1 cut(s) 259
BslI CCNNNNNNNGG 1 cut(s) 43
BsmI GAATGC 1 cut(s) 146
Bsp143I GATC 1 cut(s) 255
BspHI TCATGA 1 cut(s) 228
BspLI GGNNCC 1 cut(s) 102
BspPI GGATC 1 cut(s) 250
BssECI CCNNGG 1 cut(s) 271
BssMI GATC 1 cut(s) 255
Bst6I CTCTTC 1 cut(s) 36
BstDEI CTNAG 1 cut(s) 171
BstDSI CCRYGG 1 cut(s) 271
BstF5I GGATG 1 cut(s) 24
BstKTI GATC 1 cut(s) 258
BstMBI GATC 1 cut(s) 255
BstX2I RGATCY 1 cut(s) 255
BstYI RGATCY 1 cut(s) 255
BtgI CCRYGG 1 cut(s) 271
BtsCI GGATG 1 cut(s) 24
CciI TCATGA 1 cut(s) 228
CviAII CATG 4 cut(s) 29, 65, 73, 229
CviJI RGCY 4 cut(s) 11, 103, 156, 189
CviKI_1 RGCY 4 cut(s) 11, 103, 156, 189
DdeI CTNAG 1 cut(s) 171
DpnI GATC 1 cut(s) 257
DpnII GATC 1 cut(s) 255
Eam1104I CTCTTC 1 cut(s) 36
EarI CTCTTC 1 cut(s) 36
EcoT22I ATGCAT 1 cut(s) 199
FaeI CATG 4 cut(s) 32, 68, 76, 232
FatI CATG 4 cut(s) 28, 64, 72, 228
FauNDI CATATG 1 cut(s) 199
FblI GTMKAC 2 cut(s) 69, 310
FokI GGATG 1 cut(s) 11
FspBI CTAG 1 cut(s) 125
HapII CCGG 1 cut(s) 259
Hin1II CATG 4 cut(s) 32, 68, 76, 232
HinfI GANTC 2 cut(s) 164, 207
HpaII CCGG 1 cut(s) 259
Hpy166II GTNNAC 2 cut(s) 70, 311
Hpy188III TCNNGA 3 cut(s) 137, 229, 333
Hpy8I GTNNAC 2 cut(s) 70, 311
HpyCH4V TGCA 3 cut(s) 144, 197, 250
HpyF3I CTNAG 1 cut(s) 171
Hsp92II CATG 4 cut(s) 32, 68, 76, 232
Kzo9I GATC 1 cut(s) 255
LmnI GCTCC 2 cut(s) 16, 100
LpnPI CCDG 3 cut(s) 117, 272, 282
MaeI CTAG 1 cut(s) 125
MalI GATC 1 cut(s) 257
MboI GATC 1 cut(s) 255
MboII GAAGA 5 cut(s) 17, 53, 101, 173, 265
MfeI CAATTG 1 cut(s) 280
MflI RGATCY 1 cut(s) 255
MluCI AATT 4 cut(s) 57, 108, 280, 288
MlyI GAGTC 1 cut(s) 201
MnlI CCTC 2 cut(s) 37, 329
Mph1103I ATGCAT 1 cut(s) 199
MroXI GAANNNNTTC 1 cut(s) 60
MseI TTAA 3 cut(s) 48, 81, 111
MspI CCGG 1 cut(s) 259
MunI CAATTG 1 cut(s) 280
Mva1269I GAATGC 1 cut(s) 146
NdeI CATATG 1 cut(s) 199
NdeII GATC 1 cut(s) 255
NlaIII CATG 4 cut(s) 32, 68, 76, 232
NlaIV GGNNCC 1 cut(s) 102
NmeAIII GCCGAG 1 cut(s) 182
NsiI ATGCAT 1 cut(s) 199
PagI TCATGA 1 cut(s) 228
PctI GAATGC 1 cut(s) 146
PdmI GAANNNNTTC 1 cut(s) 60
PfeI GAWTC 1 cut(s) 164
PleI GAGTC 1 cut(s) 201
PpsI GAGTC 1 cut(s) 201
PshBI ATTAAT 2 cut(s) 81, 111
PspN4I GGNNCC 1 cut(s) 102
PsuI RGATCY 1 cut(s) 255
SaqAI TTAA 3 cut(s) 48, 81, 111
Sau3AI GATC 1 cut(s) 255
SchI GAGTC 1 cut(s) 201
SetI ASST 5 cut(s) 13, 48, 150, 177, 316
SmlI CTYRAG 2 cut(s) 149, 342
SmoI CTYRAG 2 cut(s) 149, 342
Sse9I AATT 4 cut(s) 57, 108, 280, 288
SspMI CTAG 1 cut(s) 125
TaqI TCGA 1 cut(s) 242
TasI AATT 4 cut(s) 57, 108, 280, 288
TfiI GAWTC 1 cut(s) 164
Tru1I TTAA 3 cut(s) 48, 81, 111
Tru9I TTAA 3 cut(s) 48, 81, 111
TspDTI ATGAA 6 cut(s) 53, 69, 102, 198, 217, 348
VspI ATTAAT 2 cut(s) 81, 111
XmiI GTMKAC 2 cut(s) 69, 310
XmnI GAANNNNTTC 1 cut(s) 60
XspI CTAG 1 cut(s) 125
Zsp2I ATGCAT 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.