Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002038.1

Orthogroup ID

OG0001259

Physical Location & Seq

Genomic Coordinates Forward (+)

100731 .. 101521

Gene Structure 791 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002038.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

atggaacgttggatattcacaacgccggattatgacgactttcgaactacatgtatcatcaaagacaagcacaaaattagagtcaagcctggaaggaagaacatcaagaatgaccatcctgaggtgtgtgaaaaggaacatgaagaagccactttgaagattgaagagaaactcattaaggacaaggaagctgattcattcatcatatcgatatccatgtcatgcatgcctaattgtgttcaagatcaacccaaggagaagtcgatgcccattccttttcaagtggaggagtttaagtttcaagatgcttattccaaacttgtccactattttggattcatggtgataccttttaatttcgagaatattgaagttgatggcttatcatgttttattcctactaatgatcgagctgcatacaagaggaactctaagtcgagttcttttcaagtggaggagactgatgtaggacaagattttagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

161

Amino Acids

18.88

Weight (kDa)

5.3

Isoelectric Point (pI)

51.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001259)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13320
fragaria_vesca	FvH4_5g25692
rosa_chinensis	RchiOBHm_Chr2g0137451 RchiOBHm_Chr2g0160931 RchiOBHm_Chr3g0448801 RchiOBHm_Chr3g0478501 RchiOBHm_Chr4g0401031 RchiOBHm_Chr4g0434691 RchiOBHm_Chr5g0023581 RchiOBHm_Chr5g0058431 RchiOBHm_Chr6g0250181 RchiOBHm_Chr6g0290461 RchiOBHm_Chr6g0300101 RchiOBHm_Chr6g0310791 RchiOBHm_Chr7g0197901 RchiOBHm_Chr7g0228641
rosa_multiflora	Rmu_co8205962.1_g000001 Rmu_sc0000423.1_g000017 Rmu_sc0000639.1_g000014 Rmu_sc0000753.1_g000043 Rmu_sc0001023.1_g000036 Rmu_sc0001492.1_g000004 Rmu_sc0002038.1_g000025 Rmu_sc0002761.1_g000007 Rmu_sc0002986.1_g000050 Rmu_sc0003383.1_g000016 Rmu_sc0003627.1_g000009 Rmu_sc0004345.1_g000005 Rmu_sc0006770.1_g000009 Rmu_sc0008421.1_g000002 Rmu_sc0020916.1_g000001 Rmu_sc0026853.1_g000001 Rmu_ssc0000225.1_g000001 Rmu_ssc0000446.1_g000021
rosa_roxburghii	Rroxscaffold_1G00014750 Rroxscaffold_1G00022410 Rroxscaffold_2G00095780 Rroxscaffold_2G00135550 Rroxscaffold_4G00325760 Rroxscaffold_4G00331060 Rroxscaffold_6G00402470 Rroxscaffold_6G00427850
rosa_samantha	Rh1DG013300 Rh2AG039600 Rh2AG319100 Rh2AG482400 Rh2AG563800 Rh3CG037400 Rh4DG115600 Rh5DG036700 Rh5DG232400 Rh5DG570600 Rh6CG188400 Rh7DG052000 Rh7DG402600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	7
AfiI	CCNNNNNNNGG	1 cut(s)	121
AflIII	ACRYGT	1 cut(s)	50
AgsI	TTSAA	7 cut(s)	157, 164, 242, 281, 302, 371, 449
AjnI	CCWGG	1 cut(s)	88
AluBI	AGCT	2 cut(s)	191, 413
AluI	AGCT	2 cut(s)	191, 413
Alw26I	GTCTC	1 cut(s)	452
ApeKI	GCWGC	1 cut(s)	413
ArsI	GACNNNNNNTTYG	2 cut(s)	66, 98
AsuHPI	GGTGA	1 cut(s)	355
AsuII	TTCGAA	1 cut(s)	43
AxyI	CCTNAGG	1 cut(s)	120
BbvI	GCAGC	1 cut(s)	400
BccI	CCATC	2 cut(s)	123, 371
BciT130I	CCWGG	1 cut(s)	90
BcoDI	GTCTC	1 cut(s)	452
BisI	GCNGC	1 cut(s)	414
BlsI	GCNGC	1 cut(s)	415
Bme1390I	CCNGG	1 cut(s)	90
BmrFI	CCNGG	1 cut(s)	90
BmsI	GCATC	2 cut(s)	255, 295
Bpu14I	TTCGAA	1 cut(s)	43
Bsa29I	ATCGAT	1 cut(s)	209
BsaJI	CCNNGG	1 cut(s)	252
BsaXI	ACNNNNNCTCC	2 cut(s)	281, 311
Bsc4I	CCNNNNNNNGG	1 cut(s)	121
Bse21I	CCTNAGG	1 cut(s)	120
BseBI	CCWGG	1 cut(s)	90
BseCI	ATCGAT	1 cut(s)	209
BseDI	CCNNGG	1 cut(s)	252
BseGI	GGATG	1 cut(s)	115
BseLI	CCNNNNNNNGG	1 cut(s)	121
BseMII	CTCAG	1 cut(s)	111
BseRI	GAGGAG	2 cut(s)	302, 470
BseXI	GCAGC	1 cut(s)	400
BshVI	ATCGAT	1 cut(s)	209
BsiSI	CCGG	1 cut(s)	26
BslI	CCNNNNNNNGG	1 cut(s)	121
BsmAI	GTCTC	1 cut(s)	452
Bsp119I	TTCGAA	1 cut(s)	43
Bsp143I	GATC	2 cut(s)	244, 406
BspCNI	CTCAG	1 cut(s)	112
BspDI	ATCGAT	1 cut(s)	209
BspT104I	TTCGAA	1 cut(s)	43
BssECI	CCNNGG	1 cut(s)	252
BssMI	GATC	2 cut(s)	244, 406
BssT1I	CCWWGG	1 cut(s)	252
Bst2UI	CCWGG	1 cut(s)	90
Bst6I	CTCTTC	1 cut(s)	159
BstBI	TTCGAA	1 cut(s)	43
BstC8I	GCNNGC	1 cut(s)	227
BstDEI	CTNAG	2 cut(s)	120, 432
BstF5I	GGATG	1 cut(s)	115
BstKTI	GATC	2 cut(s)	247, 409
BstMAI	GTCTC	1 cut(s)	452
BstMBI	GATC	2 cut(s)	244, 406
BstNI	CCWGG	1 cut(s)	90
BstNSI	RCATGY	2 cut(s)	54, 229
BstSCI	CCNGG	1 cut(s)	88
BstV1I	GCAGC	1 cut(s)	400
BstXI	CCANNNNNNTGG	1 cut(s)	332
Bsu15I	ATCGAT	1 cut(s)	209
Bsu36I	CCTNAGG	1 cut(s)	120
BsuTUI	ATCGAT	1 cut(s)	209
BtsCI	GGATG	1 cut(s)	115
Cac8I	GCNNGC	1 cut(s)	227
ClaI	ATCGAT	1 cut(s)	209
CviAII	CATG	7 cut(s)	51, 140, 217, 222, 226, 340, 387
CviJI	RGCY	5 cut(s)	88, 149, 191, 381, 413
CviKI_1	RGCY	5 cut(s)	88, 149, 191, 381, 413
DdeI	CTNAG	2 cut(s)	120, 432
DpnI	GATC	2 cut(s)	246, 408
DpnII	GATC	2 cut(s)	244, 406
Eam1104I	CTCTTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	159
Eco130I	CCWWGG	1 cut(s)	252
Eco32I	GATATC	1 cut(s)	213
Eco81I	CCTNAGG	1 cut(s)	120
EcoRII	CCWGG	1 cut(s)	88
EcoRV	GATATC	1 cut(s)	213
EcoT14I	CCWWGG	1 cut(s)	252
EcoT22I	ATGCAT	1 cut(s)	227
ErhI	CCWWGG	1 cut(s)	252
FaeI	CATG	7 cut(s)	54, 143, 220, 225, 229, 343, 390
FatI	CATG	7 cut(s)	50, 139, 216, 221, 225, 339, 386
Fnu4HI	GCNGC	1 cut(s)	414
FokI	GGATG	1 cut(s)	102
Fsp4HI	GCNGC	1 cut(s)	414
GluI	GCNGC	1 cut(s)	414
HapII	CCGG	1 cut(s)	26
Hin1II	CATG	7 cut(s)	54, 143, 220, 225, 229, 343, 390
HinfI	GANTC	3 cut(s)	81, 194, 336
HpaII	CCGG	1 cut(s)	26
HphI	GGTGA	1 cut(s)	355
Hpy166II	GTNNAC	1 cut(s)	325
Hpy188III	TCNNGA	5 cut(s)	106, 119, 242, 302, 361
Hpy8I	GTNNAC	1 cut(s)	325
HpyAV	CCTTC	1 cut(s)	87
HpyCH4IV	ACGT	1 cut(s)	7
HpyCH4V	TGCA	2 cut(s)	225, 416
HpyF3I	CTNAG	2 cut(s)	120, 432
HpySE526I	ACGT	1 cut(s)	7
Hsp92II	CATG	7 cut(s)	54, 143, 220, 225, 229, 343, 390
Kzo9I	GATC	2 cut(s)	244, 406
LpnPI	CCDG	4 cut(s)	39, 75, 102, 132
Lsp1109I	GCAGC	1 cut(s)	400
LweI	GCATC	2 cut(s)	255, 295
MaeII	ACGT	1 cut(s)	7
MalI	GATC	2 cut(s)	246, 408
MboI	GATC	2 cut(s)	244, 406
MboII	GAAGA	4 cut(s)	109, 155, 169, 176
MluCI	AATT	3 cut(s)	75, 232, 355
MlyI	GAGTC	1 cut(s)	90
MnlI	CCTC	4 cut(s)	115, 280, 417, 448
Mph1103I	ATGCAT	1 cut(s)	227
MseI	TTAA	4 cut(s)	177, 294, 354, 484
MspI	CCGG	1 cut(s)	26
MspR9I	CCNGG	1 cut(s)	90
MvaI	CCWGG	1 cut(s)	90
NdeII	GATC	2 cut(s)	244, 406
NlaIII	CATG	7 cut(s)	54, 143, 220, 225, 229, 343, 390
NsiI	ATGCAT	1 cut(s)	227
NspI	RCATGY	2 cut(s)	54, 229
NspV	TTCGAA	1 cut(s)	43
PaeI	GCATGC	1 cut(s)	229
PciI	ACATGT	1 cut(s)	50
PfeI	GAWTC	2 cut(s)	194, 336
PkrI	GCNGC	1 cut(s)	415
PleI	GAGTC	1 cut(s)	89
PpsI	GAGTC	1 cut(s)	89
PscI	ACATGT	1 cut(s)	50
Psp1406I	AACGTT	1 cut(s)	7
Psp6I	CCWGG	1 cut(s)	88
PspGI	CCWGG	1 cut(s)	88
SaqAI	TTAA	4 cut(s)	177, 294, 354, 484
SatI	GCNGC	1 cut(s)	414
Sau3AI	GATC	2 cut(s)	244, 406
SchI	GAGTC	1 cut(s)	90
ScrFI	CCNGG	1 cut(s)	90
SetI	ASST	5 cut(s)	10, 126, 193, 352, 415
SfaNI	GCATC	2 cut(s)	255, 295
SfuI	TTCGAA	1 cut(s)	43
SphI	GCATGC	1 cut(s)	229
Sse9I	AATT	3 cut(s)	75, 232, 355
SspI	AATATT	1 cut(s)	367
StyD4I	CCNGG	1 cut(s)	88
StyI	CCWWGG	1 cut(s)	252
TaiI	ACGT	1 cut(s)	10
TaqI	TCGA	6 cut(s)	43, 209, 263, 360, 409, 437
TasI	AATT	3 cut(s)	75, 232, 355
TfiI	GAWTC	2 cut(s)	194, 336
Tru1I	TTAA	4 cut(s)	177, 294, 354, 484
Tru9I	TTAA	4 cut(s)	177, 294, 354, 484
TseI	GCWGC	1 cut(s)	413
TspDTI	ATGAA	4 cut(s)	156, 186, 190, 328
XceI	RCATGY	2 cut(s)	54, 229
Zsp2I	ATGCAT	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.