Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004345.1

Orthogroup ID

OG0001259

Physical Location & Seq

Genomic Coordinates Forward (+)

12838 .. 14242

Gene Structure 1405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004345.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

atggacgacactgatgtgctttttggaagaccatggcatgaaagcgtcaaaggtggttattgcaaagatagcacatatttatttaggtgggagtcacacaaaattaaaatcaagcctagaaggaagaacatcaacaatgaccatcctgaagtatgtgaaaaggaacatgaagaagccactttgaagattgaagagaaactcattaaggacaaggaagctgattcattcatcacatcgatcatgtcgtgcatgcctaattgtgttcaagatcaacctaaggagaagtcaatgcccattccttttcaagtggaggagttcaagtttcaagatgcttattataaacttgtctacagtattggattcatggtgataccttttaatttcgagaatattgaagttgatggcttatcatgttttattcctgctaatgatagagctgcatacaagaggaactcgagctatgctagggttcaaatcccagagatagcagtcatttttgccttttatttggtggctcttttagaccaaagatgggctagactcgtccacttgatggtgaaatctgaatatgcgcaagaccaaacagatagtgggcttgctatgctcgacctggcctacttgcacatgtggcagagacaggtggggcgtaagggctgcttgggcctgagcttcttgcactgcctatattcctgcagggataatcagaggcttgggcttgagcttttggcacggctcagatggatctgggcctttgacataggtcctatatcacctgggaccagagcgtgtcaaagggttgatgggccttttaggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

271

Amino Acids

31.61

Weight (kDa)

7.03

Isoelectric Point (pI)

52.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001259)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13320
fragaria_vesca	FvH4_5g25692
rosa_chinensis	RchiOBHm_Chr2g0137451 RchiOBHm_Chr2g0160931 RchiOBHm_Chr3g0448801 RchiOBHm_Chr3g0478501 RchiOBHm_Chr4g0401031 RchiOBHm_Chr4g0434691 RchiOBHm_Chr5g0023581 RchiOBHm_Chr5g0058431 RchiOBHm_Chr6g0250181 RchiOBHm_Chr6g0290461 RchiOBHm_Chr6g0300101 RchiOBHm_Chr6g0310791 RchiOBHm_Chr7g0197901 RchiOBHm_Chr7g0228641
rosa_multiflora	Rmu_co8205962.1_g000001 Rmu_sc0000423.1_g000017 Rmu_sc0000639.1_g000014 Rmu_sc0000753.1_g000043 Rmu_sc0001023.1_g000036 Rmu_sc0001492.1_g000004 Rmu_sc0002038.1_g000025 Rmu_sc0002761.1_g000007 Rmu_sc0002986.1_g000050 Rmu_sc0003383.1_g000016 Rmu_sc0003627.1_g000009 Rmu_sc0004345.1_g000005 Rmu_sc0006770.1_g000009 Rmu_sc0008421.1_g000002 Rmu_sc0020916.1_g000001 Rmu_sc0026853.1_g000001 Rmu_ssc0000225.1_g000001 Rmu_ssc0000446.1_g000021
rosa_roxburghii	Rroxscaffold_1G00014750 Rroxscaffold_1G00022410 Rroxscaffold_2G00095780 Rroxscaffold_2G00135550 Rroxscaffold_4G00325760 Rroxscaffold_4G00331060 Rroxscaffold_6G00402470 Rroxscaffold_6G00427850
rosa_samantha	Rh1DG013300 Rh2AG039600 Rh2AG319100 Rh2AG482400 Rh2AG563800 Rh3CG037400 Rh4DG115600 Rh5DG036700 Rh5DG232400 Rh5DG570600 Rh6CG188400 Rh7DG052000 Rh7DG402600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	339
Acc16I	TGCGCA	1 cut(s)	573
AccB7I	CCANNNNNTGG	1 cut(s)	553
AccI	GTMKAC	1 cut(s)	348
AclWI	GGATC	1 cut(s)	749
AcuI	CTGAAG	1 cut(s)	168
AfiI	CCNNNNNNNGG	2 cut(s)	532, 553
AflIII	ACRYGT	1 cut(s)	624
AgsI	TTSAA	8 cut(s)	184, 191, 266, 305, 319, 326, 395, 473
AjnI	CCWGG	2 cut(s)	609, 772
AleI	CACNNNNGTG	1 cut(s)	14
AluBI	AGCT	5 cut(s)	218, 437, 459, 669, 721
AluI	AGCT	5 cut(s)	218, 437, 459, 669, 721
Alw26I	GTCTC	1 cut(s)	628
AlwI	GGATC	1 cut(s)	749
Ama87I	CYCGRG	1 cut(s)	454
AoxI	GGCC	4 cut(s)	612, 661, 747, 803
ApeKI	GCWGC	2 cut(s)	437, 654
AspLEI	GCGC	1 cut(s)	574
AspS9I	GGNCC	5 cut(s)	661, 747, 761, 777, 803
AsuHPI	GGTGA	3 cut(s)	379, 568, 762
AvaI	CYCGRG	1 cut(s)	454
AvaII	GGWCC	2 cut(s)	761, 777
AxyI	CCTNAGG	1 cut(s)	276
BbsI	GAAGAC	1 cut(s)	34
BbvI	GCAGC	2 cut(s)	424, 641
BccI	CCATC	6 cut(s)	150, 395, 525, 547, 732, 794
BceAI	ACGGC	1 cut(s)	746
BciT130I	CCWGG	2 cut(s)	611, 774
BcoDI	GTCTC	1 cut(s)	628
BfaI	CTAG	3 cut(s)	117, 465, 537
BfmI	CTRYAG	2 cut(s)	349, 691
BisI	GCNGC	2 cut(s)	438, 655
BlsI	GCNGC	2 cut(s)	439, 656
Bme1390I	CCNGG	2 cut(s)	611, 774
Bme18I	GGWCC	2 cut(s)	761, 777
BmeT110I	CYCGRG	1 cut(s)	454
BmgT120I	GGNCC	5 cut(s)	661, 747, 761, 777, 803
BmiI	GGNNCC	1 cut(s)	778
BmrFI	CCNGG	2 cut(s)	611, 774
BmsI	GCATC	1 cut(s)	319
BoxI	GACNNNNGTC	1 cut(s)	759
BpiI	GAAGAC	1 cut(s)	34
Bpu10I	CCTNAGC	1 cut(s)	665
BpuEI	CTTGAG	1 cut(s)	737
Bsa29I	ATCGAT	1 cut(s)	236
BsaJI	CCNNGG	2 cut(s)	32, 773
BsaXI	ACNNNNNCTCC	2 cut(s)	305, 335
Bsc4I	CCNNNNNNNGG	2 cut(s)	532, 553
Bse21I	CCTNAGG	1 cut(s)	276
BseBI	CCWGG	2 cut(s)	611, 774
BseCI	ATCGAT	1 cut(s)	236
BseDI	CCNNGG	2 cut(s)	32, 773
BseGI	GGATG	1 cut(s)	142
BseLI	CCNNNNNNNGG	2 cut(s)	532, 553
BseMII	CTCAG	2 cut(s)	656, 748
BseRI	GAGGAG	1 cut(s)	326
BseXI	GCAGC	2 cut(s)	424, 641
BshFI	GGCC	4 cut(s)	614, 663, 749, 805
BshVI	ATCGAT	1 cut(s)	236
BsiHKCI	CYCGRG	1 cut(s)	454
BslFI	GGGAC	1 cut(s)	790
BslI	CCNNNNNNNGG	2 cut(s)	532, 553
BsmAI	GTCTC	1 cut(s)	628
BsmFI	GGGAC	1 cut(s)	790
BsnI	GGCC	4 cut(s)	614, 663, 749, 805
BsoBI	CYCGRG	1 cut(s)	454
Bsp143I	GATC	3 cut(s)	237, 268, 741
Bsp19I	CCATGG	1 cut(s)	32
BspANI	GGCC	4 cut(s)	614, 663, 749, 805
BspCNI	CTCAG	2 cut(s)	657, 747
BspDI	ATCGAT	1 cut(s)	236
BspLI	GGNNCC	1 cut(s)	778
BspMAI	CTGCAG	1 cut(s)	695
BspPI	GGATC	1 cut(s)	749
BssECI	CCNNGG	2 cut(s)	32, 773
BssMI	GATC	3 cut(s)	237, 268, 741
BssT1I	CCWWGG	1 cut(s)	32
Bst2UI	CCWGG	2 cut(s)	611, 774
Bst4CI	ACNGT	1 cut(s)	353
Bst6I	CTCTTC	1 cut(s)	186
BstC8I	GCNNGC	2 cut(s)	251, 597
BstDEI	CTNAG	3 cut(s)	276, 665, 734
BstDSI	CCRYGG	1 cut(s)	32
BstF5I	GGATG	1 cut(s)	142
BstHHI	GCGC	1 cut(s)	574
BstKTI	GATC	3 cut(s)	240, 271, 744
BstMAI	GTCTC	1 cut(s)	628
BstMBI	GATC	3 cut(s)	237, 268, 741
BstMWI	GCNNNNNNNGC	4 cut(s)	69, 601, 628, 660
BstNI	CCWGG	2 cut(s)	611, 774
BstNSI	RCATGY	2 cut(s)	253, 628
BstPAI	GACNNNNGTC	1 cut(s)	759
BstSCI	CCNGG	2 cut(s)	609, 772
BstSFI	CTRYAG	2 cut(s)	349, 691
BstV1I	GCAGC	2 cut(s)	424, 641
BstV2I	GAAGAC	1 cut(s)	34
BstX2I	RGATCY	1 cut(s)	741
BstYI	RGATCY	1 cut(s)	741
Bsu15I	ATCGAT	1 cut(s)	236
Bsu36I	CCTNAGG	1 cut(s)	276
BsuRI	GGCC	4 cut(s)	614, 663, 749, 805
BsuTUI	ATCGAT	1 cut(s)	236
BtgI	CCRYGG	1 cut(s)	32
BtsCI	GGATG	1 cut(s)	142
BtsI	GCAGTG	1 cut(s)	676
BtsIMutI	CAGTG	2 cut(s)	9, 676
Cac8I	GCNNGC	2 cut(s)	251, 597
CfoI	GCGC	1 cut(s)	574
Cfr13I	GGNCC	5 cut(s)	661, 747, 761, 777, 803
ClaI	ATCGAT	1 cut(s)	236
CseI	GACGC	1 cut(s)	34
CviAII	CATG	8 cut(s)	33, 38, 167, 241, 250, 364, 411, 625
DdeI	CTNAG	3 cut(s)	276, 665, 734
DpnI	GATC	3 cut(s)	239, 270, 743
DpnII	GATC	3 cut(s)	237, 268, 741
Eam1104I	CTCTTC	1 cut(s)	186
EarI	CTCTTC	1 cut(s)	186
Eco130I	CCWWGG	1 cut(s)	32
Eco47I	GGWCC	2 cut(s)	761, 777
Eco57I	CTGAAG	1 cut(s)	168
Eco81I	CCTNAGG	1 cut(s)	276
Eco88I	CYCGRG	1 cut(s)	454
EcoO109I	RGGNCCY	1 cut(s)	761
EcoRII	CCWGG	2 cut(s)	609, 772
EcoT14I	CCWWGG	1 cut(s)	32
ErhI	CCWWGG	1 cut(s)	32
FaeI	CATG	8 cut(s)	36, 41, 170, 244, 253, 367, 414, 628
FalI	AAGNNNNNCTT	2 cut(s)	641, 673
FaqI	GGGAC	1 cut(s)	790
FatI	CATG	8 cut(s)	32, 37, 166, 240, 249, 363, 410, 624
FblI	GTMKAC	1 cut(s)	348
Fnu4HI	GCNGC	2 cut(s)	438, 655
FokI	GGATG	1 cut(s)	129
Fsp4HI	GCNGC	2 cut(s)	438, 655
FspBI	CTAG	3 cut(s)	117, 465, 537
FspI	TGCGCA	1 cut(s)	573
GlaI	GCGC	1 cut(s)	573
GluI	GCNGC	2 cut(s)	438, 655
HaeIII	GGCC	4 cut(s)	614, 663, 749, 805
HgaI	GACGC	1 cut(s)	34
HhaI	GCGC	1 cut(s)	574
Hin1II	CATG	8 cut(s)	36, 41, 170, 244, 253, 367, 414, 628
Hin6I	GCGC	1 cut(s)	572
HinP1I	GCGC	1 cut(s)	572
HinfI	GANTC	4 cut(s)	92, 221, 360, 540
HphI	GGTGA	3 cut(s)	379, 568, 762
Hpy166II	GTNNAC	2 cut(s)	349, 547
Hpy188I	TCNGA	3 cut(s)	565, 705, 737
Hpy188III	TCNNGA	4 cut(s)	146, 266, 326, 385
Hpy8I	GTNNAC	2 cut(s)	349, 547
HpyAV	CCTTC	1 cut(s)	114
HpyCH4III	ACNGT	1 cut(s)	353
HpyCH4V	TGCA	6 cut(s)	63, 249, 440, 622, 676, 693
HpyF10VI	GCNNNNNNNGC	4 cut(s)	69, 601, 628, 660
HpyF3I	CTNAG	3 cut(s)	276, 665, 734
Hsp92II	CATG	8 cut(s)	36, 41, 170, 244, 253, 367, 414, 628
HspAI	GCGC	1 cut(s)	572
Kzo9I	GATC	3 cut(s)	237, 268, 741
Lsp1109I	GCAGC	2 cut(s)	424, 641
LweI	GCATC	1 cut(s)	319
MaeI	CTAG	3 cut(s)	117, 465, 537
MaeIII	GTNAC	1 cut(s)	93
MalI	GATC	3 cut(s)	239, 270, 743
MboI	GATC	3 cut(s)	237, 268, 741
MboII	GAAGA	5 cut(s)	39, 136, 182, 196, 203
MflI	RGATCY	1 cut(s)	741
MluCI	AATT	3 cut(s)	102, 256, 379
MlyI	GAGTC	2 cut(s)	101, 534
MnlI	CCTC	3 cut(s)	304, 441, 699
MseI	TTAA	3 cut(s)	105, 204, 378
MslI	CAYNNNNRTG	1 cut(s)	14
MspR9I	CCNGG	2 cut(s)	611, 774
MvaI	CCWGG	2 cut(s)	611, 774
MwoI	GCNNNNNNNGC	4 cut(s)	69, 601, 628, 660
NcoI	CCATGG	1 cut(s)	32
NdeII	GATC	3 cut(s)	237, 268, 741
NlaIII	CATG	8 cut(s)	36, 41, 170, 244, 253, 367, 414, 628
NlaIV	GGNNCC	1 cut(s)	778
NmuCI	GTSAC	1 cut(s)	93
NsbI	TGCGCA	1 cut(s)	573
NspI	RCATGY	2 cut(s)	253, 628
OliI	CACNNNNGTG	1 cut(s)	14
PaeI	GCATGC	1 cut(s)	253
PaeR7I	CTCGAG	1 cut(s)	454
PciI	ACATGT	1 cut(s)	624
PcsI	WCGNNNNNNNCGW	1 cut(s)	242
PfeI	GAWTC	2 cut(s)	221, 360
PflMI	CCANNNNNTGG	1 cut(s)	553
PkrI	GCNGC	2 cut(s)	439, 656
PleI	GAGTC	2 cut(s)	100, 534
PpsI	GAGTC	2 cut(s)	100, 534
PpuMI	RGGWCCY	1 cut(s)	761
PscI	ACATGT	1 cut(s)	624
PshAI	GACNNNNGTC	1 cut(s)	759
PsiI	TTATAA	1 cut(s)	339
Psp5II	RGGWCCY	1 cut(s)	761
Psp6I	CCWGG	2 cut(s)	609, 772
PspGI	CCWGG	2 cut(s)	609, 772
PspN4I	GGNNCC	1 cut(s)	778
PspPI	GGNCC	5 cut(s)	661, 747, 761, 777, 803
PspPPI	RGGWCCY	1 cut(s)	761
PspXI	VCTCGAGB	1 cut(s)	454
PstI	CTGCAG	1 cut(s)	695
PsuI	RGATCY	1 cut(s)	741
RseI	CAYNNNNRTG	1 cut(s)	14
SaqAI	TTAA	3 cut(s)	105, 204, 378
SatI	GCNGC	2 cut(s)	438, 655
Sau3AI	GATC	3 cut(s)	237, 268, 741
Sau96I	GGNCC	5 cut(s)	661, 747, 761, 777, 803
SbfI	CCTGCAGG	1 cut(s)	695
SchI	GAGTC	2 cut(s)	101, 534
ScrFI	CCNGG	2 cut(s)	611, 774
SdaI	CCTGCAGG	1 cut(s)	695
SfaNI	GCATC	1 cut(s)	319
SfcI	CTRYAG	2 cut(s)	349, 691
Sfr274I	CTCGAG	1 cut(s)	454
SinI	GGWCC	2 cut(s)	761, 777
SlaI	CTCGAG	1 cut(s)	454
SmiMI	CAYNNNNRTG	1 cut(s)	14
SmlI	CTYRAG	2 cut(s)	454, 716
SmoI	CTYRAG	2 cut(s)	454, 716
SphI	GCATGC	1 cut(s)	253
Sse8387I	CCTGCAGG	1 cut(s)	695
Sse9I	AATT	3 cut(s)	102, 256, 379
SspI	AATATT	1 cut(s)	391
SspMI	CTAG	3 cut(s)	117, 465, 537
StyD4I	CCNGG	2 cut(s)	609, 772
StyI	CCWWGG	1 cut(s)	32
TaaI	ACNGT	1 cut(s)	353
TaqI	TCGA	4 cut(s)	236, 384, 455, 606
TasI	AATT	3 cut(s)	102, 256, 379
TfiI	GAWTC	2 cut(s)	221, 360
Tru1I	TTAA	3 cut(s)	105, 204, 378
Tru9I	TTAA	3 cut(s)	105, 204, 378
TscAI	CASTG	2 cut(s)	16, 683
TseFI	GTSAC	1 cut(s)	93
TseI	GCWGC	2 cut(s)	437, 654
Tsp45I	GTSAC	1 cut(s)	93
TspDTI	ATGAA	5 cut(s)	54, 183, 213, 217, 352
TspRI	CASTG	2 cut(s)	16, 683
Van91I	CCANNNNNTGG	1 cut(s)	553
VpaK11BI	GGWCC	2 cut(s)	761, 777
XceI	RCATGY	2 cut(s)	253, 628
XcmI	CCANNNNNNNNNTGG	1 cut(s)	587
XhoI	CTCGAG	1 cut(s)	454
XmiI	GTMKAC	1 cut(s)	348
XspI	CTAG	3 cut(s)	117, 465, 537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.