Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001259

Physical Location & Seq

Genomic Coordinates Forward (+)

61072684 .. 61075015

Gene Structure 2332 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26948

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGTCGGAAACATTTGGAAGATTCAAAGTGATCCGAGTTTACCGACAGTGAAGCTGAGTGATCCATACTGGATTCCATTTGGGGTGGATGAATATGCACAAGTAATAGAGGTTTGTAAAGTTCCTGTCTCTATGGGAAAATTTTATAATGAAGAGATTACTTGTCATGTGATTGACATTGAAGACACTAATGTGCTTTTTGGAAGACCATGGCATGAAAGCGTCAAAGGTGGTTATTGCAAAGACAACACATATTTATTTAGGTGGGAATCGCACAAAATTAAAATCAAGCCTGGAAGGAAGAACATCAAGAATGACCATCCTGAGGTGTGTGAAAAGGAACATGAAGAAGCCACTTTGAAGATTGAAGAGAAACTCATTAAGGACAAGGAAGCTGATTCATTCATCACATCGATATCCATGTCATGCATACCTAATTGTGTTCAATATCAAGCCAAGGAGAAGTCAATGCCCATTCCTTTTCAAGTGGAGGAATTCAAGTTTCAAGATGCTTATTCTAAACTTGTCTACGACGGTCCTGTCCAGGTGTACGTGCCGTTTGCGCTGCAAGTTCTTCACCTCACGCTGGCTCGTTTATTGCAGGCGTTTCAGTTTAAAACGGCATCAGATGAGCTCGTTGATTTGACTAAGGGTCTCGGTTTGACCATTCCTAAAGCAACTCCATTAGAAGTTCTACTCACCCCTCGCCTTCCCGCTAAGCCCTATTGGTTGACTTCTGTTGAAGCTTACATCTTGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009628 GO:0009987 GO:0010035 GO:0010038 GO:0010039 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0033554 GO:0036293 GO:0036294 GO:0042221 GO:0044550 GO:0050896 GO:0051716 GO:0055114 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071453 GO:0071456

KEGG Pathways

Metabolic & Signaling

ko00140 ko01100 ko04913 ko04917 ko04927 ko04934 map00140 map01100 map04913 map04917 map04927 map04934

Pfam Domains

Protein Families

p450

Protein Analysis

253

Amino Acids

29.03

Weight (kDa)

5.92

Isoelectric Point (pI)

40.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001259)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13320
fragaria_vesca	FvH4_5g25692
rosa_chinensis	RchiOBHm_Chr2g0137451 RchiOBHm_Chr2g0160931 RchiOBHm_Chr3g0448801 RchiOBHm_Chr3g0478501 RchiOBHm_Chr4g0401031 RchiOBHm_Chr4g0434691 RchiOBHm_Chr5g0023581 RchiOBHm_Chr5g0058431 RchiOBHm_Chr6g0250181 RchiOBHm_Chr6g0290461 RchiOBHm_Chr6g0300101 RchiOBHm_Chr6g0310791 RchiOBHm_Chr7g0197901 RchiOBHm_Chr7g0228641
rosa_multiflora	Rmu_co8205962.1_g000001 Rmu_sc0000423.1_g000017 Rmu_sc0000639.1_g000014 Rmu_sc0000753.1_g000043 Rmu_sc0001023.1_g000036 Rmu_sc0001492.1_g000004 Rmu_sc0002038.1_g000025 Rmu_sc0002761.1_g000007 Rmu_sc0002986.1_g000050 Rmu_sc0003383.1_g000016 Rmu_sc0003627.1_g000009 Rmu_sc0004345.1_g000005 Rmu_sc0006770.1_g000009 Rmu_sc0008421.1_g000002 Rmu_sc0020916.1_g000001 Rmu_sc0026853.1_g000001 Rmu_ssc0000225.1_g000001 Rmu_ssc0000446.1_g000021
rosa_roxburghii	Rroxscaffold_1G00014750 Rroxscaffold_1G00022410 Rroxscaffold_2G00095780 Rroxscaffold_2G00135550 Rroxscaffold_4G00325760 Rroxscaffold_4G00331060 Rroxscaffold_6G00402470 Rroxscaffold_6G00427850
rosa_samantha	Rh1DG013300 Rh2AG039600 Rh2AG319100 Rh2AG482400 Rh2AG563800 Rh3CG037400 Rh4DG115600 Rh5DG036700 Rh5DG232400 Rh5DG570600 Rh6CG188400 Rh7DG052000 Rh7DG402600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	147
AasI	GACNNNNNNGTC	1 cut(s)	539
AccI	GTMKAC	1 cut(s)	528
AciI	CCGC	1 cut(s)	714
AclWI	GGATC	2 cut(s)	26, 56
AcsI	RAATTY	2 cut(s)	140, 494
AfaI	GTAC	1 cut(s)	551
AfiI	CCNNNNNNNGG	2 cut(s)	325, 586
AhdI	GACNNNNNGTC	1 cut(s)	651
AjnI	CCWGG	2 cut(s)	292, 543
AleI	CACNNNNGTG	1 cut(s)	191
AluBI	AGCT	4 cut(s)	55, 395, 634, 746
AluI	AGCT	4 cut(s)	55, 395, 634, 746
Alw21I	GWGCWC	1 cut(s)	636
Alw26I	GTCTC	2 cut(s)	133, 659
AlwI	GGATC	2 cut(s)	26, 56
ApeKI	GCWGC	1 cut(s)	565
ApoI	RAATTY	2 cut(s)	140, 494
AspLEI	GCGC	1 cut(s)	565
AspS9I	GGNCC	1 cut(s)	536
AsuHPI	GGTGA	2 cut(s)	569, 691
AvaII	GGWCC	1 cut(s)	536
AxyI	CCTNAGG	1 cut(s)	324
BanII	GRGCYC	1 cut(s)	636
BbsI	GAAGAC	2 cut(s)	189, 211
Bbv12I	GWGCWC	1 cut(s)	636
BbvI	GCAGC	1 cut(s)	552
BccI	CCATC	1 cut(s)	327
BceAI	ACGGC	2 cut(s)	541, 636
BciT130I	CCWGG	2 cut(s)	294, 545
BcoDI	GTCTC	2 cut(s)	133, 659
BisI	GCNGC	1 cut(s)	566
BlpI	GCTNAGC	1 cut(s)	717
BlsI	GCNGC	1 cut(s)	567
Bme1390I	CCNGG	2 cut(s)	294, 545
Bme18I	GGWCC	1 cut(s)	536
BmeRI	GACNNNNNGTC	1 cut(s)	651
BmgT120I	GGNCC	1 cut(s)	536
BmrFI	CCNGG	2 cut(s)	294, 545
BmsI	GCATC	2 cut(s)	499, 632
BpiI	GAAGAC	2 cut(s)	189, 211
Bpu1102I	GCTNAGC	1 cut(s)	717
Bsa29I	ATCGAT	1 cut(s)	413
BsaAI	YACGTR	1 cut(s)	553
BsaI	GGTCTC	1 cut(s)	659
BsaJI	CCNNGG	2 cut(s)	209, 456
Bsc4I	CCNNNNNNNGG	2 cut(s)	325, 586
Bse1I	ACTGG	1 cut(s)	74
Bse21I	CCTNAGG	1 cut(s)	324
BseBI	CCWGG	2 cut(s)	294, 545
BseCI	ATCGAT	1 cut(s)	413
BseDI	CCNNGG	2 cut(s)	209, 456
BseGI	GGATG	2 cut(s)	94, 319
BseLI	CCNNNNNNNGG	2 cut(s)	325, 586
BseMII	CTCAG	2 cut(s)	47, 315
BseNI	ACTGG	1 cut(s)	74
BseXI	GCAGC	1 cut(s)	552
BshVI	ATCGAT	1 cut(s)	413
BsiHKAI	GWGCWC	1 cut(s)	636
BslI	CCNNNNNNNGG	2 cut(s)	325, 586
BsmAI	GTCTC	2 cut(s)	133, 659
Bso31I	GGTCTC	1 cut(s)	659
Bsp1286I	GDGCHC	1 cut(s)	636
Bsp143I	GATC	2 cut(s)	31, 61
Bsp1720I	GCTNAGC	1 cut(s)	717
Bsp19I	CCATGG	1 cut(s)	209
BspACI	CCGC	1 cut(s)	714
BspCNI	CTCAG	2 cut(s)	48, 316
BspDI	ATCGAT	1 cut(s)	413
BspPI	GGATC	2 cut(s)	26, 56
BspTNI	GGTCTC	1 cut(s)	659
BsrI	ACTGG	1 cut(s)	74
BssECI	CCNNGG	2 cut(s)	209, 456
BssMI	GATC	2 cut(s)	31, 61
BssT1I	CCWWGG	2 cut(s)	209, 456
Bst2UI	CCWGG	2 cut(s)	294, 545
Bst4CI	ACNGT	2 cut(s)	49, 536
Bst6I	CTCTTC	2 cut(s)	147, 363
BstBAI	YACGTR	1 cut(s)	553
BstC8I	GCNNGC	2 cut(s)	588, 603
BstDEI	CTNAG	4 cut(s)	56, 324, 648, 717
BstDSI	CCRYGG	1 cut(s)	209
BstF5I	GGATG	2 cut(s)	94, 319
BstHHI	GCGC	1 cut(s)	565
BstKTI	GATC	2 cut(s)	34, 64
BstMAI	GTCTC	2 cut(s)	133, 659
BstMBI	GATC	2 cut(s)	31, 61
BstMWI	GCNNNNNNNGC	1 cut(s)	562
BstNI	CCWGG	2 cut(s)	294, 545
BstSCI	CCNGG	2 cut(s)	292, 543
BstV1I	GCAGC	1 cut(s)	552
BstV2I	GAAGAC	2 cut(s)	189, 211
Bsu15I	ATCGAT	1 cut(s)	413
Bsu36I	CCTNAGG	1 cut(s)	324
BsuTUI	ATCGAT	1 cut(s)	413
BtgI	CCRYGG	1 cut(s)	209
BtsCI	GGATG	2 cut(s)	94, 319
BtsIMutI	CAGTG	1 cut(s)	54
Cac8I	GCNNGC	2 cut(s)	588, 603
CfoI	GCGC	1 cut(s)	565
Cfr13I	GGNCC	1 cut(s)	536
ClaI	ATCGAT	1 cut(s)	413
CseI	GACGC	1 cut(s)	211
Csp6I	GTAC	1 cut(s)	550
CviAII	CATG	6 cut(s)	167, 210, 215, 344, 421, 426
CviJI	RGCY	9 cut(s)	55, 292, 353, 395, 455, 590, 634, 721, 746
CviKI_1	RGCY	9 cut(s)	55, 292, 353, 395, 455, 590, 634, 721, 746
CviQI	GTAC	1 cut(s)	550
DdeI	CTNAG	4 cut(s)	56, 324, 648, 717
DpnI	GATC	2 cut(s)	33, 63
DpnII	GATC	2 cut(s)	31, 61
DraI	TTTAAA	1 cut(s)	616
DrdI	GACNNNNNNGTC	1 cut(s)	539
DriI	GACNNNNNGTC	1 cut(s)	651
DseDI	GACNNNNNNGTC	1 cut(s)	539
Eam1104I	CTCTTC	2 cut(s)	147, 363
Eam1105I	GACNNNNNGTC	1 cut(s)	651
EarI	CTCTTC	2 cut(s)	147, 363
Ecl136II	GAGCTC	1 cut(s)	634
Eco130I	CCWWGG	2 cut(s)	209, 456
Eco24I	GRGCYC	1 cut(s)	636
Eco31I	GGTCTC	1 cut(s)	659
Eco32I	GATATC	1 cut(s)	417
Eco47I	GGWCC	1 cut(s)	536
Eco53kI	GAGCTC	1 cut(s)	634
Eco81I	CCTNAGG	1 cut(s)	324
EcoICRI	GAGCTC	1 cut(s)	634
EcoRI	GAATTC	1 cut(s)	494
EcoRII	CCWGG	2 cut(s)	292, 543
EcoRV	GATATC	1 cut(s)	417
EcoT14I	CCWWGG	2 cut(s)	209, 456
EcoT22I	ATGCAT	1 cut(s)	431
EcoT38I	GRGCYC	1 cut(s)	636
ErhI	CCWWGG	2 cut(s)	209, 456
FaeI	CATG	6 cut(s)	170, 213, 218, 347, 424, 429
FatI	CATG	6 cut(s)	166, 209, 214, 343, 420, 425
FauI	CCCGC	1 cut(s)	721
FblI	GTMKAC	1 cut(s)	528
Fnu4HI	GCNGC	1 cut(s)	566
FokI	GGATG	2 cut(s)	101, 306
FriOI	GRGCYC	1 cut(s)	636
Fsp4HI	GCNGC	1 cut(s)	566
GlaI	GCGC	1 cut(s)	564
GluI	GCNGC	1 cut(s)	566
HgaI	GACGC	1 cut(s)	211
HhaI	GCGC	1 cut(s)	565
Hin1II	CATG	6 cut(s)	170, 213, 218, 347, 424, 429
Hin6I	GCGC	1 cut(s)	563
HinP1I	GCGC	1 cut(s)	563
HincII	GTYRAC	1 cut(s)	732
HindII	GTYRAC	1 cut(s)	732
HindIII	AAGCTT	1 cut(s)	744
HinfI	GANTC	4 cut(s)	22, 73, 269, 398
HphI	GGTGA	2 cut(s)	569, 691
Hpy166II	GTNNAC	4 cut(s)	41, 529, 550, 732
Hpy188I	TCNGA	3 cut(s)	8, 36, 628
Hpy188III	TCNNGA	4 cut(s)	310, 323, 506, 754
Hpy8I	GTNNAC	4 cut(s)	41, 529, 550, 732
Hpy99I	CGWCG	1 cut(s)	536
HpyAV	CCTTC	2 cut(s)	291, 719
HpyCH4III	ACNGT	2 cut(s)	49, 536
HpyCH4IV	ACGT	1 cut(s)	552
HpyCH4V	TGCA	5 cut(s)	98, 240, 429, 568, 601
HpyF10VI	GCNNNNNNNGC	1 cut(s)	562
HpyF3I	CTNAG	4 cut(s)	56, 324, 648, 717
HpySE526I	ACGT	1 cut(s)	552
Hsp92II	CATG	6 cut(s)	170, 213, 218, 347, 424, 429
HspAI	GCGC	1 cut(s)	563
Kzo9I	GATC	2 cut(s)	31, 61
Lsp1109I	GCAGC	1 cut(s)	552
LweI	GCATC	2 cut(s)	499, 632
MaeII	ACGT	1 cut(s)	552
MalI	GATC	2 cut(s)	33, 63
MboI	GATC	2 cut(s)	31, 61
MboII	GAAGA	9 cut(s)	31, 164, 194, 216, 313, 359, 373, 380, 566
MhlI	GDGCHC	1 cut(s)	636
MluCI	AATT	4 cut(s)	140, 279, 436, 494
MnlI	CCTC	5 cut(s)	103, 319, 484, 590, 714
Mph1103I	ATGCAT	1 cut(s)	431
MseI	TTAA	3 cut(s)	282, 381, 615
MslI	CAYNNNNRTG	1 cut(s)	191
MspR9I	CCNGG	2 cut(s)	294, 545
MvaI	CCWGG	2 cut(s)	294, 545
MwoI	GCNNNNNNNGC	1 cut(s)	562
NcoI	CCATGG	1 cut(s)	209
NdeII	GATC	2 cut(s)	31, 61
NlaIII	CATG	6 cut(s)	170, 213, 218, 347, 424, 429
NsiI	ATGCAT	1 cut(s)	431
OliI	CACNNNNGTG	1 cut(s)	191
PfeI	GAWTC	4 cut(s)	22, 73, 269, 398
PkrI	GCNGC	1 cut(s)	567
Ppu21I	YACGTR	1 cut(s)	553
PsiI	TTATAA	1 cut(s)	147
Psp124BI	GAGCTC	1 cut(s)	636
Psp6I	CCWGG	2 cut(s)	292, 543
PspGI	CCWGG	2 cut(s)	292, 543
PspPI	GGNCC	1 cut(s)	536
RsaI	GTAC	1 cut(s)	551
RsaNI	GTAC	1 cut(s)	550
RseI	CAYNNNNRTG	1 cut(s)	191
SacI	GAGCTC	1 cut(s)	636
SaqAI	TTAA	3 cut(s)	282, 381, 615
SatI	GCNGC	1 cut(s)	566
Sau3AI	GATC	2 cut(s)	31, 61
Sau96I	GGNCC	1 cut(s)	536
ScrFI	CCNGG	2 cut(s)	294, 545
SduI	GDGCHC	1 cut(s)	636
SfaNI	GCATC	2 cut(s)	499, 632
SinI	GGWCC	1 cut(s)	536
SmiMI	CAYNNNNRTG	1 cut(s)	191
Sse9I	AATT	4 cut(s)	140, 279, 436, 494
SsiI	CCGC	1 cut(s)	714
SstI	GAGCTC	1 cut(s)	636
StyD4I	CCNGG	2 cut(s)	292, 543
StyI	CCWWGG	2 cut(s)	209, 456
TaaI	ACNGT	2 cut(s)	49, 536
TaiI	ACGT	1 cut(s)	555
TaqI	TCGA	1 cut(s)	413
TasI	AATT	4 cut(s)	140, 279, 436, 494
TfiI	GAWTC	4 cut(s)	22, 73, 269, 398
Tru1I	TTAA	3 cut(s)	282, 381, 615
Tru9I	TTAA	3 cut(s)	282, 381, 615
TscAI	CASTG	1 cut(s)	54
TseI	GCWGC	1 cut(s)	565
TspDTI	ATGAA	6 cut(s)	105, 165, 231, 360, 390, 394
TspRI	CASTG	1 cut(s)	54
VpaK11BI	GGWCC	1 cut(s)	536
XapI	RAATTY	2 cut(s)	140, 494
XmiI	GTMKAC	1 cut(s)	528
Zsp2I	ATGCAT	1 cut(s)	431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.