Rroxscaffold_1G00022410

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001259
Physical Location & Seq
Forward (+)
27684006 .. 27686256
2251 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00022410.1

Sequence Viewer

Length: 603 bp
ATGAATTATGCACAAGTAACAAAGGTTTGTAAAGTTCATGTCTCTATGGGAAAATTTTATAAAGAAGAGGTTACTTGTCATGTGATTGACATGGACGACACTAATGTACTTTTTGGAAGACCATGGCATGAAAGCGTCAAAGGTGATTATTGCAAAGACAACACATATTTATTTAGCTGGGAGTCACACAAAATTAAAATCAAGCCTGGAAGGAAGAACATCAAGAATGCCCATCCTAGGGTATGTGAAAAGGAACATGAAGAAGTTACTTTGAAGATTGAGAAGAAACTCATTAAAGACAAGGAAGCTGATTCATTCATCACATCGATACCCATGTCATGCATGCCTAATTGTGTTCAAGATCAACCCAAGGAAAAGTCAATGTCCATTCCTTTTCAAGTGGAGGAGTTCAAGTTTCAAGATGCTTATTCTAAACTTGTCTACGGTATTGGATTCATGGTGATACCTTTTAATTTCGAGAACATTGAAGTTGATGGCTTATCATGTTTTATTCCTACTAATGATCGAGTTGCATACAAGAGGAACTCAAGGTCGAGTTCTTTTCAAGTGGAGCAGATTGATGTAGGACGAGATTTTAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 Retrotrans_gag rve

Protein Analysis

200

Amino Acids

23.26

Weight (kDa)

6.99

Isoelectric Point (pI)

38.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 60
AccI GTMKAC 1 cut(s) 441
AcsI RAATTY 1 cut(s) 53
AfaI GTAC 1 cut(s) 108
AfiI CCNNNNNNNGG 2 cut(s) 237, 238
AgsI TTSAA 7 cut(s) 274, 359, 398, 412, 419, 488, 566
AjnI CCWGG 1 cut(s) 205
AluBI AGCT 3 cut(s) 177, 308, 600
AluI AGCT 3 cut(s) 177, 308, 600
Alw26I GTCTC 1 cut(s) 46
ApoI RAATTY 1 cut(s) 53
AspA2I CCTAGG 1 cut(s) 236
AsuHPI GGTGA 2 cut(s) 155, 472
AvrII CCTAGG 1 cut(s) 236
BaeI ACNNNNGTAYC 2 cut(s) 320, 353
BbsI GAAGAC 1 cut(s) 124
BccI CCATC 2 cut(s) 240, 488
BciT130I CCWGG 1 cut(s) 207
BcoDI GTCTC 1 cut(s) 46
BfaI CTAG 1 cut(s) 237
BlnI CCTAGG 1 cut(s) 236
Bme1390I CCNGG 1 cut(s) 207
BmrFI CCNGG 1 cut(s) 207
BmsI GCATC 1 cut(s) 412
BpiI GAAGAC 1 cut(s) 124
BpuEI CTTGAG 1 cut(s) 532
Bsa29I ATCGAT 1 cut(s) 326
BsaJI CCNNGG 3 cut(s) 122, 236, 369
BsaXI ACNNNNNCTCC 2 cut(s) 398, 428
Bsc4I CCNNNNNNNGG 2 cut(s) 237, 238
BseBI CCWGG 1 cut(s) 207
BseCI ATCGAT 1 cut(s) 326
BseDI CCNNGG 3 cut(s) 122, 236, 369
BseGI GGATG 1 cut(s) 232
BseLI CCNNNNNNNGG 2 cut(s) 237, 238
BseRI GAGGAG 1 cut(s) 419
BseYI CCCAGC 1 cut(s) 177
BshVI ATCGAT 1 cut(s) 326
BslI CCNNNNNNNGG 2 cut(s) 237, 238
BsmAI GTCTC 1 cut(s) 46
BsmI GAATGC 1 cut(s) 232
Bsp143I GATC 2 cut(s) 361, 523
Bsp19I CCATGG 1 cut(s) 122
BspDI ATCGAT 1 cut(s) 326
BssECI CCNNGG 3 cut(s) 122, 236, 369
BssMI GATC 2 cut(s) 361, 523
BssT1I CCWWGG 3 cut(s) 122, 236, 369
Bst2UI CCWGG 1 cut(s) 207
Bst4CI ACNGT 1 cut(s) 446
Bst6I CTCTTC 1 cut(s) 60
BstC8I GCNNGC 1 cut(s) 344
BstDSI CCRYGG 1 cut(s) 122
BstF5I GGATG 1 cut(s) 232
BstKTI GATC 2 cut(s) 364, 526
BstMAI GTCTC 1 cut(s) 46
BstMBI GATC 2 cut(s) 361, 523
BstNI CCWGG 1 cut(s) 207
BstNSI RCATGY 1 cut(s) 346
BstSCI CCNGG 1 cut(s) 205
BstV2I GAAGAC 1 cut(s) 124
Bsu15I ATCGAT 1 cut(s) 326
BsuTUI ATCGAT 1 cut(s) 326
BtgI CCRYGG 1 cut(s) 122
BtsCI GGATG 1 cut(s) 232
Cac8I GCNNGC 1 cut(s) 344
ClaI ATCGAT 1 cut(s) 326
CseI GACGC 1 cut(s) 124
Csp6I GTAC 1 cut(s) 107
CviJI RGCY 5 cut(s) 177, 205, 308, 498, 600
CviKI_1 RGCY 5 cut(s) 177, 205, 308, 498, 600
CviQI GTAC 1 cut(s) 107
DpnI GATC 2 cut(s) 363, 525
DpnII GATC 2 cut(s) 361, 523
Eam1104I CTCTTC 1 cut(s) 60
EarI CTCTTC 1 cut(s) 60
Eco130I CCWWGG 3 cut(s) 122, 236, 369
EcoRII CCWGG 1 cut(s) 205
EcoT14I CCWWGG 3 cut(s) 122, 236, 369
EcoT22I ATGCAT 1 cut(s) 344
ErhI CCWWGG 3 cut(s) 122, 236, 369
FblI GTMKAC 1 cut(s) 441
FokI GGATG 1 cut(s) 219
FspBI CTAG 1 cut(s) 237
GsaI CCCAGC 1 cut(s) 181
HgaI GACGC 1 cut(s) 124
HinfI GANTC 3 cut(s) 182, 311, 453
HphI GGTGA 2 cut(s) 155, 472
Hpy166II GTNNAC 1 cut(s) 442
Hpy188III TCNNGA 4 cut(s) 223, 359, 419, 478
Hpy8I GTNNAC 1 cut(s) 442
HpyAV CCTTC 1 cut(s) 204
HpyCH4III ACNGT 1 cut(s) 446
HpyCH4V TGCA 4 cut(s) 11, 153, 342, 533
Kzo9I GATC 2 cut(s) 361, 523
LmnI GCTCC 1 cut(s) 571
LpnPI CCDG 3 cut(s) 163, 192, 219
LweI GCATC 1 cut(s) 412
MaeI CTAG 1 cut(s) 237
MaeIII GTNAC 4 cut(s) 16, 70, 183, 265
MalI GATC 2 cut(s) 363, 525
MboI GATC 2 cut(s) 361, 523
MboII GAAGA 6 cut(s) 77, 129, 226, 272, 286, 295
MluCI AATT 5 cut(s) 4, 53, 192, 349, 472
MlyI GAGTC 1 cut(s) 191
MnlI CCTC 3 cut(s) 61, 397, 534
Mph1103I ATGCAT 1 cut(s) 344
MseI TTAA 3 cut(s) 195, 294, 471
MspR9I CCNGG 1 cut(s) 207
Mva1269I GAATGC 1 cut(s) 232
MvaI CCWGG 1 cut(s) 207
NcoI CCATGG 1 cut(s) 122
NdeII GATC 2 cut(s) 361, 523
NmuCI GTSAC 1 cut(s) 183
NsiI ATGCAT 1 cut(s) 344
NspI RCATGY 1 cut(s) 346
PaeI GCATGC 1 cut(s) 346
PctI GAATGC 1 cut(s) 232
PfeI GAWTC 2 cut(s) 311, 453
PleI GAGTC 1 cut(s) 190
PpsI GAGTC 1 cut(s) 190
PsiI TTATAA 1 cut(s) 60
Psp6I CCWGG 1 cut(s) 205
PspFI CCCAGC 1 cut(s) 177
PspGI CCWGG 1 cut(s) 205
RsaI GTAC 1 cut(s) 108
RsaNI GTAC 1 cut(s) 107
SaqAI TTAA 3 cut(s) 195, 294, 471
Sau3AI GATC 2 cut(s) 361, 523
SchI GAGTC 1 cut(s) 191
ScrFI CCNGG 1 cut(s) 207
SetI ASST 8 cut(s) 27, 72, 145, 179, 310, 469, 554, 602
SfaNI GCATC 1 cut(s) 412
SmlI CTYRAG 1 cut(s) 547
SmoI CTYRAG 1 cut(s) 547
SphI GCATGC 1 cut(s) 346
Sse9I AATT 5 cut(s) 4, 53, 192, 349, 472
SspMI CTAG 1 cut(s) 237
StyD4I CCNGG 1 cut(s) 205
StyI CCWWGG 3 cut(s) 122, 236, 369
TaaI ACNGT 1 cut(s) 446
TaqI TCGA 4 cut(s) 326, 477, 526, 554
TasI AATT 5 cut(s) 4, 53, 192, 349, 472
TatI WGTACW 1 cut(s) 106
TfiI GAWTC 2 cut(s) 311, 453
Tru1I TTAA 3 cut(s) 195, 294, 471
Tru9I TTAA 3 cut(s) 195, 294, 471
TseFI GTSAC 1 cut(s) 183
Tsp45I GTSAC 1 cut(s) 183
TspDTI ATGAA 7 cut(s) 17, 26, 144, 273, 303, 307, 445
XapI RAATTY 1 cut(s) 53
XceI RCATGY 1 cut(s) 346
XmaJI CCTAGG 1 cut(s) 236
XmiI GTMKAC 1 cut(s) 441
XspI CTAG 1 cut(s) 237
Zsp2I ATGCAT 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.