Rmu_sc0026853.1_g000001

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0026853.1
Physical Location & Seq
Reverse (-)
342 .. 725
384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0026853.1_g000001.1.cds

Sequence Viewer

Length: 384 bp
atgaagcctggaaggaagaacctcaagaatgaccatcctgaggtgtgtgaaaaggaacatgaagaagccactttgaagattgaggagaaactcattaaggacaaggaagctgattcattcatcacattgatatccatgtcacgcatgcctaattgtattcaagatcaacccaaggaaaagtcaatgcccattccttttcaagtggaggagttcaagtttcaagatgattattctaaacttgtctacggtattggattcatggtgataccttttaattttgagaatattgaagttgatggcttatcacgttttattcctactaatgatcgagctgcatacaagaggttaggtcgagttcttttcaagtggaggagactgatgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

15.04

Weight (kDa)

7.74

Isoelectric Point (pI)

42.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 243
AfiI CCNNNNNNNGG 1 cut(s) 40
AgsI TTSAA 7 cut(s) 76, 161, 200, 214, 221, 290, 364
AjnI CCWGG 1 cut(s) 7
AluBI AGCT 2 cut(s) 110, 332
AluI AGCT 2 cut(s) 110, 332
Alw26I GTCTC 1 cut(s) 367
ApeKI GCWGC 1 cut(s) 332
AsuHPI GGTGA 1 cut(s) 274
AxyI CCTNAGG 1 cut(s) 39
BbvI GCAGC 1 cut(s) 319
BccI CCATC 2 cut(s) 42, 290
BciT130I CCWGG 1 cut(s) 9
BcoDI GTCTC 1 cut(s) 367
BisI GCNGC 1 cut(s) 333
BlsI GCNGC 1 cut(s) 334
Bme1390I CCNGG 1 cut(s) 9
BmrFI CCNGG 1 cut(s) 9
BpuEI CTTGAG 1 cut(s) 8
BsaJI CCNNGG 1 cut(s) 171
BsaXI ACNNNNNCTCC 2 cut(s) 200, 230
Bsc4I CCNNNNNNNGG 1 cut(s) 40
Bse21I CCTNAGG 1 cut(s) 39
BseBI CCWGG 1 cut(s) 9
BseDI CCNNGG 1 cut(s) 171
BseGI GGATG 1 cut(s) 34
BseLI CCNNNNNNNGG 1 cut(s) 40
BseMII CTCAG 1 cut(s) 30
BseRI GAGGAG 2 cut(s) 98, 221
BseXI GCAGC 1 cut(s) 319
BslI CCNNNNNNNGG 1 cut(s) 40
BsmAI GTCTC 1 cut(s) 367
Bsp143I GATC 2 cut(s) 163, 325
BspCNI CTCAG 1 cut(s) 31
BssECI CCNNGG 1 cut(s) 171
BssMI GATC 2 cut(s) 163, 325
BssT1I CCWWGG 1 cut(s) 171
Bst2UI CCWGG 1 cut(s) 9
Bst4CI ACNGT 1 cut(s) 248
BstC8I GCNNGC 1 cut(s) 146
BstDEI CTNAG 1 cut(s) 39
BstF5I GGATG 1 cut(s) 34
BstKTI GATC 2 cut(s) 166, 328
BstMAI GTCTC 1 cut(s) 367
BstMBI GATC 2 cut(s) 163, 325
BstNI CCWGG 1 cut(s) 9
BstNSI RCATGY 1 cut(s) 148
BstSCI CCNGG 1 cut(s) 7
BstV1I GCAGC 1 cut(s) 319
Bsu36I CCTNAGG 1 cut(s) 39
BtsCI GGATG 1 cut(s) 34
Cac8I GCNNGC 1 cut(s) 146
CviAII CATG 4 cut(s) 59, 136, 145, 259
CviJI RGCY 5 cut(s) 7, 68, 110, 300, 332
CviKI_1 RGCY 5 cut(s) 7, 68, 110, 300, 332
DdeI CTNAG 1 cut(s) 39
DpnI GATC 2 cut(s) 165, 327
DpnII GATC 2 cut(s) 163, 325
Eco130I CCWWGG 1 cut(s) 171
Eco32I GATATC 1 cut(s) 132
Eco81I CCTNAGG 1 cut(s) 39
EcoRII CCWGG 1 cut(s) 7
EcoRV GATATC 1 cut(s) 132
EcoT14I CCWWGG 1 cut(s) 171
ErhI CCWWGG 1 cut(s) 171
FaeI CATG 4 cut(s) 62, 139, 148, 262
FaiI YATR 5 cut(s) 60, 137, 146, 260, 337
FatI CATG 4 cut(s) 58, 135, 144, 258
FblI GTMKAC 1 cut(s) 243
Fnu4HI GCNGC 1 cut(s) 333
FokI GGATG 1 cut(s) 21
Fsp4HI GCNGC 1 cut(s) 333
GluI GCNGC 1 cut(s) 333
Hin1II CATG 4 cut(s) 62, 139, 148, 262
HinfI GANTC 2 cut(s) 113, 255
HphI GGTGA 1 cut(s) 274
Hpy166II GTNNAC 1 cut(s) 244
Hpy188III TCNNGA 4 cut(s) 25, 38, 161, 221
Hpy8I GTNNAC 1 cut(s) 244
HpyAV CCTTC 1 cut(s) 6
HpyCH4III ACNGT 1 cut(s) 248
HpyCH4IV ACGT 1 cut(s) 307
HpyCH4V TGCA 1 cut(s) 335
HpyF3I CTNAG 1 cut(s) 39
HpySE526I ACGT 1 cut(s) 307
Hsp92II CATG 4 cut(s) 62, 139, 148, 262
Kzo9I GATC 2 cut(s) 163, 325
LpnPI CCDG 2 cut(s) 21, 51
Lsp1109I GCAGC 1 cut(s) 319
MaeII ACGT 1 cut(s) 307
MaeIII GTNAC 1 cut(s) 138
MalI GATC 2 cut(s) 165, 327
MboI GATC 2 cut(s) 163, 325
MboII GAAGA 3 cut(s) 28, 74, 88
MluCI AATT 2 cut(s) 151, 274
MnlI CCTC 6 cut(s) 32, 34, 76, 199, 336, 363
MseI TTAA 2 cut(s) 96, 273
MspR9I CCNGG 1 cut(s) 9
MvaI CCWGG 1 cut(s) 9
NdeII GATC 2 cut(s) 163, 325
NlaIII CATG 4 cut(s) 62, 139, 148, 262
NmuCI GTSAC 1 cut(s) 138
NspI RCATGY 1 cut(s) 148
PaeI GCATGC 1 cut(s) 148
PfeI GAWTC 2 cut(s) 113, 255
PkrI GCNGC 1 cut(s) 334
Psp6I CCWGG 1 cut(s) 7
PspGI CCWGG 1 cut(s) 7
SaqAI TTAA 2 cut(s) 96, 273
SatI GCNGC 1 cut(s) 333
Sau3AI GATC 2 cut(s) 163, 325
ScrFI CCNGG 1 cut(s) 9
SetI ASST 8 cut(s) 24, 45, 112, 271, 310, 334, 347, 352
SmlI CTYRAG 1 cut(s) 23
SmoI CTYRAG 1 cut(s) 23
SphI GCATGC 1 cut(s) 148
Sse9I AATT 2 cut(s) 151, 274
SspI AATATT 1 cut(s) 286
StyD4I CCNGG 1 cut(s) 7
StyI CCWWGG 1 cut(s) 171
TaaI ACNGT 1 cut(s) 248
TaiI ACGT 1 cut(s) 310
TaqI TCGA 2 cut(s) 328, 352
TasI AATT 2 cut(s) 151, 274
TfiI GAWTC 2 cut(s) 113, 255
Tru1I TTAA 2 cut(s) 96, 273
Tru9I TTAA 2 cut(s) 96, 273
TseFI GTSAC 1 cut(s) 138
TseI GCWGC 1 cut(s) 332
Tsp45I GTSAC 1 cut(s) 138
TspDTI ATGAA 5 cut(s) 17, 75, 105, 109, 247
XceI RCATGY 1 cut(s) 148
XmiI GTMKAC 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.