RchiOBHm_Chr3g0478501

Belongs to the glycosyl hydrolase 18 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0001259
Physical Location & Seq
Reverse (-)
24256377 .. 24257550
1174 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44368

Sequence Viewer

Length: 837 bp
ATGGGAAAATTTTATAAAGAAGAGATTACTTGTCATGTGATTGACATGGATGACACTAATGTGCTTTTTGGAAGGCCATGGCATGAAAGCGTCAAAGGTGGTTATTGCAAAGATGACACATATTTATTTAGATGGGAGTCACACAAAATTAAAATCAAGCTTGGAAGGAAGAACATCAAGAATTATCCTCCTAAGGTTTTCGAGAAGAAGTTAGAGTCCAAGTTTTCTTTGCCGGTTGAGATTAATAATTTAATTGAAGAAAAGCTAGAAGAATTTCTAATGGAAGAACCTCCACAAGAATTCATGGATGAAGACCAAGAAGAGGTTAAAGATGAAATTGCTCATGAAGACATAGTTATTTGTACTGATGAAGTCTTGGAGCCTAAAATAAATCATTCAGAGCCAGATGTTATTCAAGAGTACAACCTTGAGAGCTGTGAAGAATCTACTAAGGTTGCCTATAACAGACTCATATATGGTGTTGGGTTCATGATTGTGTCATCAGAATATGCAGAAGATCCAGCCAATAATCCACATGTCCAATTGTCTAATTTTTTCTCAGGTCTTTTGTCTACCTATTCTTGTCCTTTATTCAAAAGGAACTCGAGGGCGAGTTCTTTCATAGTGGAGGAGAATGATGTAGGACGAGAATGGACTCAGTTTAGCCGAAAAACCATAAAAGTAAAGAAGCGGTGTAGAATCAAGAAGAGTGATTGGAAAATAGGTAACTCACGCGTAATCAGGTTACTAGCCGCTGGAATATTCAAGAAGATTTGGTTTTGGACTTTTCGGGTTTCTCGTGCGAAAAGTCAGGTTTTGATTTTGAATCAGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_18

Protein Analysis

278

Amino Acids

32.69

Weight (kDa)

6.15

Isoelectric Point (pI)

44.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 15
AccI GTMKAC 1 cut(s) 572
AccII CGCG 1 cut(s) 735
AciI CCGC 2 cut(s) 691, 753
AclWI GGATC 1 cut(s) 512
AcsI RAATTY 3 cut(s) 8, 272, 299
AfaI GTAC 2 cut(s) 364, 422
AfiI CCNNNNNNNGG 1 cut(s) 322
AflIII ACRYGT 2 cut(s) 535, 733
AgsI TTSAA 5 cut(s) 257, 416, 595, 766, 826
AleI CACNNNNGTG 1 cut(s) 59
AluBI AGCT 3 cut(s) 160, 265, 435
AluI AGCT 3 cut(s) 160, 265, 435
AlwI GGATC 1 cut(s) 512
Ama87I CYCGRG 1 cut(s) 604
AoxI GGCC 1 cut(s) 74
ApoI RAATTY 3 cut(s) 8, 272, 299
AseI ATTAAT 1 cut(s) 243
Asp700I GAANNNNTTC 1 cut(s) 273
AvaI CYCGRG 1 cut(s) 604
AxyI CCTNAGG 1 cut(s) 192
BauI CACGAG 1 cut(s) 798
BbsI GAAGAC 2 cut(s) 318, 354
BccI CCATC 1 cut(s) 126
BfaI CTAG 2 cut(s) 266, 749
BisI GCNGC 1 cut(s) 753
BlsI GCNGC 1 cut(s) 754
BmeT110I CYCGRG 1 cut(s) 604
BmiI GGNNCC 1 cut(s) 381
BpiI GAAGAC 2 cut(s) 318, 354
BpuEI CTTGAG 1 cut(s) 449
BsaJI CCNNGG 1 cut(s) 77
Bsc4I CCNNNNNNNGG 1 cut(s) 322
Bse118I RCCGGY 1 cut(s) 232
Bse21I CCTNAGG 1 cut(s) 192
BseDI CCNNGG 1 cut(s) 77
BseGI GGATG 2 cut(s) 55, 313
BseLI CCNNNNNNNGG 1 cut(s) 322
BseMII CTCAG 2 cut(s) 573, 671
BseRI GAGGAG 1 cut(s) 644
Bsh1236I CGCG 1 cut(s) 735
BshFI GGCC 1 cut(s) 76
BsiHKCI CYCGRG 1 cut(s) 604
BsiSI CCGG 1 cut(s) 233
BslI CCNNNNNNNGG 1 cut(s) 322
BsnI GGCC 1 cut(s) 76
BsoBI CYCGRG 1 cut(s) 604
Bsp143I GATC 1 cut(s) 517
Bsp19I CCATGG 1 cut(s) 77
BspACI CCGC 2 cut(s) 691, 753
BspANI GGCC 1 cut(s) 76
BspCNI CTCAG 2 cut(s) 572, 670
BspFNI CGCG 1 cut(s) 735
BspHI TCATGA 2 cut(s) 343, 489
BspLI GGNNCC 1 cut(s) 381
BspPI GGATC 1 cut(s) 512
BsrFI RCCGGY 1 cut(s) 232
BssAI RCCGGY 1 cut(s) 232
BssECI CCNNGG 1 cut(s) 77
BssMI GATC 1 cut(s) 517
BssSI CACGAG 1 cut(s) 798
BssT1I CCWWGG 1 cut(s) 77
Bst2BI CACGAG 1 cut(s) 798
Bst6I CTCTTC 3 cut(s) 15, 315, 701
BstDEI CTNAG 4 cut(s) 192, 450, 559, 657
BstDSI CCRYGG 1 cut(s) 77
BstF5I GGATG 2 cut(s) 55, 313
BstFNI CGCG 1 cut(s) 735
BstKTI GATC 1 cut(s) 520
BstMBI GATC 1 cut(s) 517
BstNSI RCATGY 1 cut(s) 539
BstUI CGCG 1 cut(s) 735
BstV2I GAAGAC 2 cut(s) 318, 354
BstX2I RGATCY 1 cut(s) 517
BstYI RGATCY 1 cut(s) 517
Bsu36I CCTNAGG 1 cut(s) 192
BsuRI GGCC 1 cut(s) 76
BtgI CCRYGG 1 cut(s) 77
BtsCI GGATG 2 cut(s) 55, 313
CciI TCATGA 2 cut(s) 343, 489
Cfr10I RCCGGY 1 cut(s) 232
CseI GACGC 1 cut(s) 79
Csp6I GTAC 2 cut(s) 363, 421
CviAII CATG 8 cut(s) 35, 46, 78, 83, 304, 344, 490, 536
CviJI RGCY 9 cut(s) 76, 160, 265, 382, 403, 435, 524, 666, 752
CviKI_1 RGCY 9 cut(s) 76, 160, 265, 382, 403, 435, 524, 666, 752
CviQI GTAC 2 cut(s) 363, 421
DdeI CTNAG 4 cut(s) 192, 450, 559, 657
DpnI GATC 1 cut(s) 519
DpnII GATC 1 cut(s) 517
Eam1104I CTCTTC 3 cut(s) 15, 315, 701
EarI CTCTTC 3 cut(s) 15, 315, 701
Eco130I CCWWGG 1 cut(s) 77
Eco81I CCTNAGG 1 cut(s) 192
Eco88I CYCGRG 1 cut(s) 604
EcoRI GAATTC 1 cut(s) 299
EcoT14I CCWWGG 1 cut(s) 77
ErhI CCWWGG 1 cut(s) 77
FaeI CATG 8 cut(s) 38, 49, 81, 86, 307, 347, 493, 539
FatI CATG 8 cut(s) 34, 45, 77, 82, 303, 343, 489, 535
FblI GTMKAC 1 cut(s) 572
Fnu4HI GCNGC 1 cut(s) 753
FokI GGATG 2 cut(s) 62, 320
Fsp4HI GCNGC 1 cut(s) 753
FspBI CTAG 2 cut(s) 266, 749
GluI GCNGC 1 cut(s) 753
HaeIII GGCC 1 cut(s) 76
HapII CCGG 1 cut(s) 233
HgaI GACGC 1 cut(s) 79
Hin1II CATG 8 cut(s) 38, 49, 81, 86, 307, 347, 493, 539
HindIII AAGCTT 1 cut(s) 158
HinfI GANTC 7 cut(s) 137, 215, 443, 468, 655, 699, 826
HpaII CCGG 1 cut(s) 233
Hpy166II GTNNAC 1 cut(s) 573
Hpy188I TCNGA 3 cut(s) 400, 505, 831
Hpy188III TCNNGA 7 cut(s) 178, 202, 344, 416, 490, 703, 766
Hpy8I GTNNAC 1 cut(s) 573
HpyAV CCTTC 2 cut(s) 66, 159
HpyCH4V TGCA 2 cut(s) 108, 512
HpyF3I CTNAG 4 cut(s) 192, 450, 559, 657
Hsp92II CATG 8 cut(s) 38, 49, 81, 86, 307, 347, 493, 539
Kzo9I GATC 1 cut(s) 517
LmnI GCTCC 1 cut(s) 379
LpnPI CCDG 7 cut(s) 246, 417, 534, 546, 727, 741, 797
MaeI CTAG 2 cut(s) 266, 749
MaeIII GTNAC 3 cut(s) 138, 725, 744
MalI GATC 1 cut(s) 519
MboI GATC 1 cut(s) 517
MfeI CAATTG 1 cut(s) 542
MflI RGATCY 1 cut(s) 517
MluI ACGCGT 1 cut(s) 733
MlyI GAGTC 4 cut(s) 146, 224, 462, 649
MnlI CCTC 5 cut(s) 198, 300, 316, 600, 622
MroXI GAANNNNTTC 1 cut(s) 273
MseI TTAA 4 cut(s) 150, 243, 251, 327
MslI CAYNNNNRTG 2 cut(s) 59, 494
MspA1I CMGCKG 1 cut(s) 755
MspI CCGG 1 cut(s) 233
MunI CAATTG 1 cut(s) 542
MvnI CGCG 1 cut(s) 735
NcoI CCATGG 1 cut(s) 77
NdeII GATC 1 cut(s) 517
NlaIII CATG 8 cut(s) 38, 49, 81, 86, 307, 347, 493, 539
NlaIV GGNNCC 1 cut(s) 381
NmuCI GTSAC 1 cut(s) 138
NspI RCATGY 1 cut(s) 539
OliI CACNNNNGTG 1 cut(s) 59
PaeR7I CTCGAG 1 cut(s) 604
PagI TCATGA 2 cut(s) 343, 489
PciI ACATGT 1 cut(s) 535
PcsI WCGNNNNNNNCGW 1 cut(s) 796
PdmI GAANNNNTTC 1 cut(s) 273
PfeI GAWTC 3 cut(s) 443, 699, 826
PkrI GCNGC 1 cut(s) 754
PleI GAGTC 4 cut(s) 145, 223, 462, 649
PpsI GAGTC 4 cut(s) 145, 223, 462, 649
PscI ACATGT 1 cut(s) 535
PshBI ATTAAT 1 cut(s) 243
PsiI TTATAA 1 cut(s) 15
PspN4I GGNNCC 1 cut(s) 381
PspXI VCTCGAGB 1 cut(s) 604
PsuI RGATCY 1 cut(s) 517
RsaI GTAC 2 cut(s) 364, 422
RsaNI GTAC 2 cut(s) 363, 421
RseI CAYNNNNRTG 2 cut(s) 59, 494
SaqAI TTAA 4 cut(s) 150, 243, 251, 327
SatI GCNGC 1 cut(s) 753
Sau3AI GATC 1 cut(s) 517
SchI GAGTC 4 cut(s) 146, 224, 462, 649
Sfr274I CTCGAG 1 cut(s) 604
SlaI CTCGAG 1 cut(s) 604
SmiMI CAYNNNNRTG 2 cut(s) 59, 494
SmlI CTYRAG 2 cut(s) 428, 604
SmoI CTYRAG 2 cut(s) 428, 604
SsiI CCGC 2 cut(s) 691, 753
SspI AATATT 1 cut(s) 762
SspMI CTAG 2 cut(s) 266, 749
StyI CCWWGG 1 cut(s) 77
TaqI TCGA 2 cut(s) 201, 605
TatI WGTACW 2 cut(s) 362, 420
TauI GCSGC 1 cut(s) 755
TfiI GAWTC 3 cut(s) 443, 699, 826
Tru1I TTAA 4 cut(s) 150, 243, 251, 327
Tru9I TTAA 4 cut(s) 150, 243, 251, 327
TseFI GTSAC 1 cut(s) 138
Tsp45I GTSAC 1 cut(s) 138
TspDTI ATGAA 8 cut(s) 99, 292, 324, 348, 360, 384, 478, 610
VspI ATTAAT 1 cut(s) 243
XapI RAATTY 3 cut(s) 8, 272, 299
XceI RCATGY 1 cut(s) 539
XhoI CTCGAG 1 cut(s) 604
XmiI GTMKAC 1 cut(s) 572
XmnI GAANNNNTTC 1 cut(s) 273
XspI CTAG 2 cut(s) 266, 749
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.