Rroxscaffold_2G00135550

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001259
Physical Location & Seq
Reverse (-)
73120951 .. 73121691
741 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00135550.1

Sequence Viewer

Length: 483 bp
ATGTGCTTTTTGGAAGACCATGGCATCAAAGCGTTAATGGGAGTTATTGCAAAGACCACATATTTATTTAGGTGGGAGTCTCACAAAATTAAAATCAAGCCTGGAAAGAAGAACATCAAGAATGACCATCCTGAAGTTTGTGAAAAGAAACATGAAGAAGCCACTTTGAAGATTGAAGAGAAATGCATTAAAGACAAGGAAGCTGATTCATTCATCACATCGATATCCATGTCATGCATGCCTAATTGTGTTCAAGATCAACCCAAGGAGAAGTCAATGCCCATTCATTTTCAAGTGGAGGAGTTCAAGTTTCAAGATGCTTATTCTAAACTTGTCTGCAATGTTGGATTCATGGTGATACCTTTTAAATTAGAGAATATTGAAGTTGATGACTTATCATGTTTTATTCCTACTAATGATCGAGCTGCTTTCAAGAGGAACTTGAGGTTGAATTCTTTTCAAGTGGAGGGGACAAGATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

18.6

Weight (kDa)

7.58

Isoelectric Point (pI)

42.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 451
AcuI CTGAAG 1 cut(s) 153
AjnI CCWGG 1 cut(s) 100
AluBI AGCT 2 cut(s) 203, 425
AluI AGCT 2 cut(s) 203, 425
Alw26I GTCTC 1 cut(s) 84
ApeKI GCWGC 1 cut(s) 425
ApoI RAATTY 1 cut(s) 451
AsuHPI GGTGA 1 cut(s) 367
BbsI GAAGAC 1 cut(s) 21
BbvI GCAGC 1 cut(s) 412
BccI CCATC 1 cut(s) 135
BciT130I CCWGG 1 cut(s) 102
BcoDI GTCTC 1 cut(s) 84
BisI GCNGC 1 cut(s) 426
BlsI GCNGC 1 cut(s) 427
Bme1390I CCNGG 1 cut(s) 102
BmrFI CCNGG 1 cut(s) 102
BmsI GCATC 2 cut(s) 33, 307
BpiI GAAGAC 1 cut(s) 21
BpuEI CTTGAG 1 cut(s) 463
Bsa29I ATCGAT 1 cut(s) 221
BsaJI CCNNGG 2 cut(s) 19, 264
BsaXI ACNNNNNCTCC 2 cut(s) 293, 323
Bse3DI GCAATG 1 cut(s) 346
BseBI CCWGG 1 cut(s) 102
BseCI ATCGAT 1 cut(s) 221
BseDI CCNNGG 2 cut(s) 19, 264
BseGI GGATG 1 cut(s) 127
BseMI GCAATG 1 cut(s) 346
BseRI GAGGAG 1 cut(s) 314
BseXI GCAGC 1 cut(s) 412
BshVI ATCGAT 1 cut(s) 221
BsmAI GTCTC 1 cut(s) 84
Bsp143I GATC 2 cut(s) 256, 418
Bsp19I CCATGG 1 cut(s) 19
BspDI ATCGAT 1 cut(s) 221
BsrDI GCAATG 1 cut(s) 346
BssECI CCNNGG 2 cut(s) 19, 264
BssMI GATC 2 cut(s) 256, 418
BssT1I CCWWGG 2 cut(s) 19, 264
Bst2UI CCWGG 1 cut(s) 102
Bst6I CTCTTC 1 cut(s) 171
BstC8I GCNNGC 1 cut(s) 239
BstDSI CCRYGG 1 cut(s) 19
BstF5I GGATG 1 cut(s) 127
BstKTI GATC 2 cut(s) 259, 421
BstMAI GTCTC 1 cut(s) 84
BstMBI GATC 2 cut(s) 256, 418
BstNI CCWGG 1 cut(s) 102
BstNSI RCATGY 1 cut(s) 241
BstSCI CCNGG 1 cut(s) 100
BstV1I GCAGC 1 cut(s) 412
BstV2I GAAGAC 1 cut(s) 21
Bsu15I ATCGAT 1 cut(s) 221
BsuTUI ATCGAT 1 cut(s) 221
BtgI CCRYGG 1 cut(s) 19
BtsCI GGATG 1 cut(s) 127
Cac8I GCNNGC 1 cut(s) 239
ClaI ATCGAT 1 cut(s) 221
CviAII CATG 7 cut(s) 20, 152, 229, 234, 238, 352, 399
CviJI RGCY 4 cut(s) 100, 161, 203, 425
CviKI_1 RGCY 4 cut(s) 100, 161, 203, 425
DpnI GATC 2 cut(s) 258, 420
DpnII GATC 2 cut(s) 256, 418
DraI TTTAAA 1 cut(s) 367
Eam1104I CTCTTC 1 cut(s) 171
EarI CTCTTC 1 cut(s) 171
Eco130I CCWWGG 2 cut(s) 19, 264
Eco32I GATATC 1 cut(s) 225
Eco57I CTGAAG 1 cut(s) 153
EcoRI GAATTC 1 cut(s) 451
EcoRII CCWGG 1 cut(s) 100
EcoRV GATATC 1 cut(s) 225
EcoT14I CCWWGG 2 cut(s) 19, 264
EcoT22I ATGCAT 2 cut(s) 188, 239
ErhI CCWWGG 2 cut(s) 19, 264
FaeI CATG 7 cut(s) 23, 155, 232, 237, 241, 355, 402
FaiI YATR 8 cut(s) 21, 61, 153, 230, 235, 239, 353, 400
FalI AAGNNNNNCTT 2 cut(s) 425, 457
FatI CATG 7 cut(s) 19, 151, 228, 233, 237, 351, 398
Fnu4HI GCNGC 1 cut(s) 426
FokI GGATG 1 cut(s) 114
Fsp4HI GCNGC 1 cut(s) 426
GluI GCNGC 1 cut(s) 426
Hin1II CATG 7 cut(s) 23, 155, 232, 237, 241, 355, 402
HinfI GANTC 3 cut(s) 77, 206, 348
HphI GGTGA 1 cut(s) 367
Hpy188III TCNNGA 5 cut(s) 118, 131, 254, 314, 433
HpyCH4V TGCA 4 cut(s) 50, 186, 237, 339
Hsp92II CATG 7 cut(s) 23, 155, 232, 237, 241, 355, 402
Kzo9I GATC 2 cut(s) 256, 418
LpnPI CCDG 3 cut(s) 87, 114, 144
Lsp1109I GCAGC 1 cut(s) 412
LweI GCATC 2 cut(s) 33, 307
MalI GATC 2 cut(s) 258, 420
MboI GATC 2 cut(s) 256, 418
MboII GAAGA 5 cut(s) 26, 121, 167, 181, 188
MluCI AATT 4 cut(s) 87, 244, 368, 451
MlyI GAGTC 1 cut(s) 86
MmeI TCCRAC 1 cut(s) 325
MnlI CCTC 4 cut(s) 292, 429, 438, 460
Mph1103I ATGCAT 2 cut(s) 188, 239
MseI TTAA 4 cut(s) 35, 90, 189, 366
MspR9I CCNGG 1 cut(s) 102
MvaI CCWGG 1 cut(s) 102
NcoI CCATGG 1 cut(s) 19
NdeII GATC 2 cut(s) 256, 418
NlaIII CATG 7 cut(s) 23, 155, 232, 237, 241, 355, 402
NsiI ATGCAT 2 cut(s) 188, 239
NspI RCATGY 1 cut(s) 241
PaeI GCATGC 1 cut(s) 241
PfeI GAWTC 2 cut(s) 206, 348
PkrI GCNGC 1 cut(s) 427
PleI GAGTC 1 cut(s) 85
PpsI GAGTC 1 cut(s) 85
Psp6I CCWGG 1 cut(s) 100
PspGI CCWGG 1 cut(s) 100
SaqAI TTAA 4 cut(s) 35, 90, 189, 366
SatI GCNGC 1 cut(s) 426
Sau3AI GATC 2 cut(s) 256, 418
SchI GAGTC 1 cut(s) 86
ScrFI CCNGG 1 cut(s) 102
SetI ASST 5 cut(s) 74, 205, 364, 427, 449
SfaNI GCATC 2 cut(s) 33, 307
SmlI CTYRAG 1 cut(s) 442
SmoI CTYRAG 1 cut(s) 442
SphI GCATGC 1 cut(s) 241
Sse9I AATT 4 cut(s) 87, 244, 368, 451
SspI AATATT 1 cut(s) 379
StyD4I CCNGG 1 cut(s) 100
StyI CCWWGG 2 cut(s) 19, 264
TaqI TCGA 2 cut(s) 221, 421
TasI AATT 4 cut(s) 87, 244, 368, 451
TfiI GAWTC 2 cut(s) 206, 348
Tru1I TTAA 4 cut(s) 35, 90, 189, 366
Tru9I TTAA 4 cut(s) 35, 90, 189, 366
TseI GCWGC 1 cut(s) 425
TspDTI ATGAA 5 cut(s) 168, 198, 202, 275, 340
XapI RAATTY 1 cut(s) 451
XceI RCATGY 1 cut(s) 241
Zsp2I ATGCAT 2 cut(s) 188, 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.