Rroxscaffold_6G00427850

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0001259
Physical Location & Seq
Forward (+)
48399197 .. 48402640
3444 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00427850.1

Sequence Viewer

Length: 450 bp
ATGTGCTTTTTGGAAGACCATGACATGGAAGTGTCAAAGGTGGTTATTGCAAAGACAACACATATTTATTTAGGTGGGAGTCACACAAAATTAGAATCAAGCCTGGAAGGAAGAACATCAAGAATGACCATCTTGAGGTGTGAAAATGAACATGAAGAAGCCGCTTTGAAGATTGAAGAGAAACTCATTAAAGACATAGAAGCTGATTCATTCATCACATCGATATCCGTGTCATACATACCTAAATGTGTTCAAGATCAACCCAAAGAGAAGTCAATGCCCATTCCTTTTCAAGTGGAGGAGTTCAAGTTTCAAGATACTTATTCTAAACTTGTCTACGGTATTAGATTCATGGTGATACATTTTAATTTCAAAAATATTGAAGTTGATGGTTTATCATGTTTTATTCTTACTAATGATCGAGCTACATGCAAGAGGAACCCGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

17.24

Weight (kDa)

5.96

Isoelectric Point (pI)

39.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 25
AccI GTMKAC 1 cut(s) 336
AciI CCGC 1 cut(s) 162
AfiI CCNNNNNNNGG 2 cut(s) 25, 135
AgsI TTSAA 8 cut(s) 169, 176, 254, 293, 307, 314, 373, 383
AjnI CCWGG 1 cut(s) 102
AluBI AGCT 2 cut(s) 203, 425
AluI AGCT 2 cut(s) 203, 425
Ama87I CYCGRG 1 cut(s) 442
AsuHPI GGTGA 1 cut(s) 367
AvaI CYCGRG 1 cut(s) 442
BbsI GAAGAC 1 cut(s) 21
BccI CCATC 2 cut(s) 137, 383
BcgI CGANNNNNNTGC 2 cut(s) 411, 445
BciT130I CCWGG 1 cut(s) 104
BisI GCNGC 1 cut(s) 162
BlsI GCNGC 1 cut(s) 163
Bme1390I CCNGG 1 cut(s) 104
BmeT110I CYCGRG 1 cut(s) 442
BmiI GGNNCC 1 cut(s) 440
BmrFI CCNGG 1 cut(s) 104
BpiI GAAGAC 1 cut(s) 21
BpuEI CTTGAG 1 cut(s) 154
Bsa29I ATCGAT 1 cut(s) 221
BsaJI CCNNGG 1 cut(s) 443
BsaXI ACNNNNNCTCC 2 cut(s) 293, 323
Bsc4I CCNNNNNNNGG 2 cut(s) 25, 135
BseBI CCWGG 1 cut(s) 104
BseCI ATCGAT 1 cut(s) 221
BseDI CCNNGG 1 cut(s) 443
BseLI CCNNNNNNNGG 2 cut(s) 25, 135
BseRI GAGGAG 1 cut(s) 314
BshVI ATCGAT 1 cut(s) 221
BsiHKCI CYCGRG 1 cut(s) 442
BslI CCNNNNNNNGG 2 cut(s) 25, 135
BsoBI CYCGRG 1 cut(s) 442
Bsp143I GATC 2 cut(s) 256, 418
BspACI CCGC 1 cut(s) 162
BspDI ATCGAT 1 cut(s) 221
BspLI GGNNCC 1 cut(s) 440
BssECI CCNNGG 1 cut(s) 443
BssMI GATC 2 cut(s) 256, 418
Bst2UI CCWGG 1 cut(s) 104
Bst4CI ACNGT 1 cut(s) 341
Bst6I CTCTTC 1 cut(s) 171
BstKTI GATC 2 cut(s) 259, 421
BstMBI GATC 2 cut(s) 256, 418
BstNI CCWGG 1 cut(s) 104
BstNSI RCATGY 1 cut(s) 432
BstSCI CCNGG 1 cut(s) 102
BstV2I GAAGAC 1 cut(s) 21
Bsu15I ATCGAT 1 cut(s) 221
BsuTUI ATCGAT 1 cut(s) 221
ClaI ATCGAT 1 cut(s) 221
CviAII CATG 6 cut(s) 20, 25, 152, 352, 399, 429
CviJI RGCY 4 cut(s) 102, 161, 203, 425
CviKI_1 RGCY 4 cut(s) 102, 161, 203, 425
DpnI GATC 2 cut(s) 258, 420
DpnII GATC 2 cut(s) 256, 418
Eam1104I CTCTTC 1 cut(s) 171
EarI CTCTTC 1 cut(s) 171
Eco32I GATATC 1 cut(s) 225
Eco88I CYCGRG 1 cut(s) 442
EcoRII CCWGG 1 cut(s) 102
EcoRV GATATC 1 cut(s) 225
FaeI CATG 6 cut(s) 23, 28, 155, 355, 402, 432
FatI CATG 6 cut(s) 19, 24, 151, 351, 398, 428
FblI GTMKAC 1 cut(s) 336
Fnu4HI GCNGC 1 cut(s) 162
Fsp4HI GCNGC 1 cut(s) 162
GluI GCNGC 1 cut(s) 162
Hin1II CATG 6 cut(s) 23, 28, 155, 355, 402, 432
HinfI GANTC 4 cut(s) 79, 95, 206, 348
HphI GGTGA 1 cut(s) 367
Hpy166II GTNNAC 1 cut(s) 337
Hpy188III TCNNGA 4 cut(s) 120, 133, 254, 314
Hpy8I GTNNAC 1 cut(s) 337
HpyAV CCTTC 1 cut(s) 101
HpyCH4III ACNGT 1 cut(s) 341
HpyCH4V TGCA 2 cut(s) 50, 432
Hsp92II CATG 6 cut(s) 23, 28, 155, 355, 402, 432
Kzo9I GATC 2 cut(s) 256, 418
LpnPI CCDG 2 cut(s) 89, 116
MaeIII GTNAC 1 cut(s) 80
MalI GATC 2 cut(s) 258, 420
MboI GATC 2 cut(s) 256, 418
MboII GAAGA 5 cut(s) 26, 123, 167, 181, 188
MluCI AATT 2 cut(s) 89, 367
MlyI GAGTC 1 cut(s) 88
MnlI CCTC 4 cut(s) 129, 292, 429, 438
MseI TTAA 2 cut(s) 189, 366
MslI CAYNNNNRTG 1 cut(s) 29
MspR9I CCNGG 1 cut(s) 104
MvaI CCWGG 1 cut(s) 104
NdeII GATC 2 cut(s) 256, 418
NlaIII CATG 6 cut(s) 23, 28, 155, 355, 402, 432
NlaIV GGNNCC 1 cut(s) 440
NmuCI GTSAC 1 cut(s) 80
NspI RCATGY 1 cut(s) 432
PfeI GAWTC 3 cut(s) 95, 206, 348
PflMI CCANNNNNTGG 1 cut(s) 25
PkrI GCNGC 1 cut(s) 163
PleI GAGTC 1 cut(s) 87
PpsI GAGTC 1 cut(s) 87
Psp6I CCWGG 1 cut(s) 102
PspGI CCWGG 1 cut(s) 102
PspN4I GGNNCC 1 cut(s) 440
RseI CAYNNNNRTG 1 cut(s) 29
SaqAI TTAA 2 cut(s) 189, 366
SatI GCNGC 1 cut(s) 162
Sau3AI GATC 2 cut(s) 256, 418
SchI GAGTC 1 cut(s) 88
ScrFI CCNGG 1 cut(s) 104
SetI ASST 7 cut(s) 42, 76, 140, 205, 244, 427, 449
SmiMI CAYNNNNRTG 1 cut(s) 29
SmlI CTYRAG 1 cut(s) 133
SmoI CTYRAG 1 cut(s) 133
Sse9I AATT 2 cut(s) 89, 367
SsiI CCGC 1 cut(s) 162
SspI AATATT 1 cut(s) 379
StyD4I CCNGG 1 cut(s) 102
TaaI ACNGT 1 cut(s) 341
TaqI TCGA 2 cut(s) 221, 421
TasI AATT 2 cut(s) 89, 367
TauI GCSGC 1 cut(s) 164
TfiI GAWTC 3 cut(s) 95, 206, 348
Tru1I TTAA 2 cut(s) 189, 366
Tru9I TTAA 2 cut(s) 189, 366
TseFI GTSAC 1 cut(s) 80
Tsp45I GTSAC 1 cut(s) 80
TspDTI ATGAA 5 cut(s) 162, 168, 198, 202, 340
TspGWI ACGGA 1 cut(s) 217
Van91I CCANNNNNTGG 1 cut(s) 25
XceI RCATGY 1 cut(s) 432
XmiI GTMKAC 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.