Rroxscaffold_2G00095780

Belongs to the glycosyl hydrolase 18 family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
17133385 .. 17140467
7083 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00095780.1

Sequence Viewer

Length: 423 bp
ATGTCATGCATGCCTAATTGTGTTCAAGATCAACCCAAGGACAAGTCAATGCCCATTCCTTTTCAAGTGGAGGAGTTCAAGTTTCAAGATGTTTATTCTAAACTTGTCTACGGTATTAGACTCATAGTGATTCCTTTTAGTTTCGAGAATATTGAAGTTGATGGCTTATCATGTTTTATTCCTACTAATGATCGAGCTACATACAAGAGGAACTCAAGGTCGAGTTCTTTTCAAGTGGAGGAAACCGATGTAGGACGAGATTTTAGCCAATTTCAACAAAAAATCTTGAAAAGAAATAAGCGTCTTCACATTAAGAAGAATAATTTGAATATTGGAAATTTGTATTCAAATAGATTTCTTAATGATGGAATAAATCATAAATTACTCTTTTGGATATATCGGGATTCTCGAGCAAAATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

140

Amino Acids

16.54

Weight (kDa)

9.45

Isoelectric Point (pI)

59.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 108
AcsI RAATTY 1 cut(s) 337
AluBI AGCT 1 cut(s) 197
AluI AGCT 1 cut(s) 197
Ama87I CYCGRG 1 cut(s) 408
ApoI RAATTY 1 cut(s) 337
AvaI CYCGRG 1 cut(s) 408
BbsI GAAGAC 1 cut(s) 296
BccI CCATC 2 cut(s) 155, 359
BmeT110I CYCGRG 1 cut(s) 408
BpiI GAAGAC 1 cut(s) 296
BpuEI CTTGAG 1 cut(s) 199
BsaJI CCNNGG 1 cut(s) 36
BsaXI ACNNNNNCTCC 2 cut(s) 65, 95
BseDI CCNNGG 1 cut(s) 36
BseRI GAGGAG 1 cut(s) 86
BsiHKCI CYCGRG 1 cut(s) 408
BsoBI CYCGRG 1 cut(s) 408
Bsp143I GATC 2 cut(s) 28, 190
BssECI CCNNGG 1 cut(s) 36
BssMI GATC 2 cut(s) 28, 190
BssT1I CCWWGG 1 cut(s) 36
Bst4CI ACNGT 1 cut(s) 113
BstC8I GCNNGC 1 cut(s) 11
BstKTI GATC 2 cut(s) 31, 193
BstMBI GATC 2 cut(s) 28, 190
BstNSI RCATGY 1 cut(s) 13
BstV2I GAAGAC 1 cut(s) 296
Cac8I GCNNGC 1 cut(s) 11
CseI GACGC 1 cut(s) 290
CviAII CATG 3 cut(s) 6, 10, 171
CviJI RGCY 3 cut(s) 165, 197, 267
CviKI_1 RGCY 3 cut(s) 165, 197, 267
DpnI GATC 2 cut(s) 30, 192
DpnII GATC 2 cut(s) 28, 190
Eco130I CCWWGG 1 cut(s) 36
Eco88I CYCGRG 1 cut(s) 408
EcoT14I CCWWGG 1 cut(s) 36
EcoT22I ATGCAT 1 cut(s) 11
ErhI CCWWGG 1 cut(s) 36
FaeI CATG 3 cut(s) 9, 13, 174
FaiI YATR 7 cut(s) 7, 11, 125, 172, 202, 378, 397
FatI CATG 3 cut(s) 5, 9, 170
FblI GTMKAC 1 cut(s) 108
HgaI GACGC 1 cut(s) 290
Hin1II CATG 3 cut(s) 9, 13, 174
HinfI GANTC 3 cut(s) 120, 130, 404
Hpy166II GTNNAC 1 cut(s) 109
Hpy188III TCNNGA 7 cut(s) 26, 86, 145, 286, 401, 408, 420
Hpy8I GTNNAC 1 cut(s) 109
HpyCH4III ACNGT 1 cut(s) 113
HpyCH4V TGCA 1 cut(s) 9
Hsp92II CATG 3 cut(s) 9, 13, 174
Kzo9I GATC 2 cut(s) 28, 190
MalI GATC 2 cut(s) 30, 192
MboI GATC 2 cut(s) 28, 190
MboII GAAGA 2 cut(s) 296, 328
MluCI AATT 5 cut(s) 16, 269, 322, 337, 380
MlyI GAGTC 1 cut(s) 114
MnlI CCTC 3 cut(s) 64, 201, 232
Mph1103I ATGCAT 1 cut(s) 11
MseI TTAA 2 cut(s) 312, 360
NdeII GATC 2 cut(s) 28, 190
NlaIII CATG 3 cut(s) 9, 13, 174
NsiI ATGCAT 1 cut(s) 11
NspI RCATGY 1 cut(s) 13
PaeI GCATGC 1 cut(s) 13
PaeR7I CTCGAG 1 cut(s) 408
PcsI WCGNNNNNNNCGW 1 cut(s) 406
PfeI GAWTC 2 cut(s) 130, 404
PleI GAGTC 1 cut(s) 114
PpsI GAGTC 1 cut(s) 114
SaqAI TTAA 2 cut(s) 312, 360
Sau3AI GATC 2 cut(s) 28, 190
SchI GAGTC 1 cut(s) 114
SetI ASST 2 cut(s) 199, 221
Sfr274I CTCGAG 1 cut(s) 408
SlaI CTCGAG 1 cut(s) 408
SmlI CTYRAG 2 cut(s) 214, 408
SmoI CTYRAG 2 cut(s) 214, 408
SphI GCATGC 1 cut(s) 13
Sse9I AATT 5 cut(s) 16, 269, 322, 337, 380
SspI AATATT 2 cut(s) 151, 331
StyI CCWWGG 1 cut(s) 36
TaaI ACNGT 1 cut(s) 113
TaqI TCGA 4 cut(s) 144, 193, 221, 409
TasI AATT 5 cut(s) 16, 269, 322, 337, 380
TfiI GAWTC 2 cut(s) 130, 404
Tru1I TTAA 2 cut(s) 312, 360
Tru9I TTAA 2 cut(s) 312, 360
XapI RAATTY 1 cut(s) 337
XceI RCATGY 1 cut(s) 13
XhoI CTCGAG 1 cut(s) 408
XmiI GTMKAC 1 cut(s) 108
Zsp2I ATGCAT 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.