Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001259

Physical Location & Seq

Genomic Coordinates Forward (+)

5840541 .. 5842745

Gene Structure 2205 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22427

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGAATTTCTGTAGGCTGAGTGATCCATACTGGATTCCATTTGGAGAGGATGAATATGCACAAGTAACAGAGGTTTGTAAAGTTCCTGTCTCTATGGGAAAATTTTATAAAGAAGAGATTACTTGTCATGTGATTGACATGGACGACACTAATGTGCTTTTTGGAAGACCATGGCATGAAAGCGTCAAAGGTGGTTATTGCAAAGACAACACATATTTATTTAGGTGGGAGTCACACAAAATTAAAATCAAGCCTAGAAGGAAGAACATCAAGAATGACCATCCTGAGGTGTGTGAAAAGGAACATGAAGAAGCAACTTTGAAGATTGAAGAGAAACTCATTAAGGATAAGGAAGCTGATTCGTTCATCACATCGATATCCATGTCATGCATGCCTAATTGTGTTCAAGATCAACCCAAGGAGAAGTCATTGCCCATTCCTTTTCAAGTGGAGGAGTTCAAGTTTCAAGATGCTTATTCTAAACTTGTCTACGGTATTGGATTCATGGTGATTCCTTTTAATTTCGAGAATATTGAAGTTGATGGCTTATCATGTTTTATTCCTACTAATGATCGAGCTGCATACAAGAGGAACTCGAGGTCGAGTTCTTTTCAAGTGGAGGAGACTGATGTAGGACGAGATTTTAGCCAATTTCAACAAAGAATCGGGAAAAGAAAGAAGCGTCTTCACATTAAGAAGAATAATTTGAATATTGGAAATTGGTATTCAAATAGGCTTCTTAATGATGGAATTAATCATAAATTACTATTTTGGATATATCGGGATTCTCGAACAAAATCTTGGTTGGGATTCCAATTATATATTTGCTGGATTCTAGCTCATCTCATATGGCTTTCGACGCTTGACGGAGTCTCTTACTATTGTGTTCACGCTTCCCGCATCAACGTTGAACCTTTCTTTATGGCCCCCTTGAACAGTGCATCACACAATATCGCATCCAAAATCACAATGGATTTATCTGTCGGCTTAACCAAGTTTTCCTTTTCAACATATTTAAACACAATGTCAGTGGCATCCGAAGCACTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 Retrotrans_gag rve

Protein Analysis

349

Amino Acids

40.71

Weight (kDa)

7.96

Isoelectric Point (pI)

47.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001259)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13320
fragaria_vesca	FvH4_5g25692
rosa_chinensis	RchiOBHm_Chr2g0137451 RchiOBHm_Chr2g0160931 RchiOBHm_Chr3g0448801 RchiOBHm_Chr3g0478501 RchiOBHm_Chr4g0401031 RchiOBHm_Chr4g0434691 RchiOBHm_Chr5g0023581 RchiOBHm_Chr5g0058431 RchiOBHm_Chr6g0250181 RchiOBHm_Chr6g0290461 RchiOBHm_Chr6g0300101 RchiOBHm_Chr6g0310791 RchiOBHm_Chr7g0197901 RchiOBHm_Chr7g0228641
rosa_multiflora	Rmu_co8205962.1_g000001 Rmu_sc0000423.1_g000017 Rmu_sc0000639.1_g000014 Rmu_sc0000753.1_g000043 Rmu_sc0001023.1_g000036 Rmu_sc0001492.1_g000004 Rmu_sc0002038.1_g000025 Rmu_sc0002761.1_g000007 Rmu_sc0002986.1_g000050 Rmu_sc0003383.1_g000016 Rmu_sc0003627.1_g000009 Rmu_sc0004345.1_g000005 Rmu_sc0006770.1_g000009 Rmu_sc0008421.1_g000002 Rmu_sc0020916.1_g000001 Rmu_sc0026853.1_g000001 Rmu_ssc0000225.1_g000001 Rmu_ssc0000446.1_g000021
rosa_roxburghii	Rroxscaffold_1G00014750 Rroxscaffold_1G00022410 Rroxscaffold_2G00095780 Rroxscaffold_2G00135550 Rroxscaffold_4G00325760 Rroxscaffold_4G00331060 Rroxscaffold_6G00402470 Rroxscaffold_6G00427850
rosa_samantha	Rh1DG013300 Rh2AG039600 Rh2AG319100 Rh2AG482400 Rh2AG563800 Rh3CG037400 Rh4DG115600 Rh5DG036700 Rh5DG232400 Rh5DG570600 Rh6CG188400 Rh7DG052000 Rh7DG402600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	108
AccI	GTMKAC	1 cut(s)	489
AciI	CCGC	1 cut(s)	898
AclI	AACGTT	1 cut(s)	906
AclWI	GGATC	1 cut(s)	17
AcsI	RAATTY	2 cut(s)	4, 101
AfiI	CCNNNNNNNGG	1 cut(s)	286
AjuI	GAANNNNNNNTTGG	2 cut(s)	784, 816
AleI	CACNNNNGTG	1 cut(s)	152
AluBI	AGCT	3 cut(s)	356, 578, 839
AluI	AGCT	3 cut(s)	356, 578, 839
Alw26I	GTCTC	3 cut(s)	94, 617, 877
AlwI	GGATC	1 cut(s)	17
Ama87I	CYCGRG	1 cut(s)	595
AoxI	GGCC	1 cut(s)	924
ApeKI	GCWGC	1 cut(s)	578
ApoI	RAATTY	2 cut(s)	4, 101
AseI	ATTAAT	1 cut(s)	753
AspS9I	GGNCC	1 cut(s)	925
AsuHPI	GGTGA	1 cut(s)	520
AvaI	CYCGRG	1 cut(s)	595
AxyI	CCTNAGG	1 cut(s)	285
BbsI	GAAGAC	2 cut(s)	172, 677
BbvI	GCAGC	1 cut(s)	565
BccI	CCATC	3 cut(s)	288, 536, 740
BcoDI	GTCTC	3 cut(s)	94, 617, 877
BfaI	CTAG	2 cut(s)	255, 836
BfmI	CTRYAG	2 cut(s)	10, 1046
BisI	GCNGC	1 cut(s)	579
BlsI	GCNGC	1 cut(s)	580
BmeT110I	CYCGRG	1 cut(s)	595
BmgT120I	GGNCC	1 cut(s)	925
BmiI	GGNNCC	1 cut(s)	927
BmsI	GCATC	5 cut(s)	460, 909, 950, 965, 1043
BpiI	GAAGAC	2 cut(s)	172, 677
Bsa29I	ATCGAT	1 cut(s)	374
BsaJI	CCNNGG	2 cut(s)	170, 417
BsaXI	ACNNNNNCTCC	2 cut(s)	446, 476
Bsc4I	CCNNNNNNNGG	1 cut(s)	286
Bse1I	ACTGG	1 cut(s)	35
Bse21I	CCTNAGG	1 cut(s)	285
Bse3DI	GCAATG	1 cut(s)	428
BseCI	ATCGAT	1 cut(s)	374
BseDI	CCNNGG	2 cut(s)	170, 417
BseGI	GGATG	4 cut(s)	55, 280, 956, 1034
BseLI	CCNNNNNNNGG	1 cut(s)	286
BseMI	GCAATG	1 cut(s)	428
BseMII	CTCAG	2 cut(s)	8, 276
BseNI	ACTGG	1 cut(s)	35
BseRI	GAGGAG	2 cut(s)	467, 635
BseXI	GCAGC	1 cut(s)	565
BshFI	GGCC	1 cut(s)	926
BshVI	ATCGAT	1 cut(s)	374
BsiHKCI	CYCGRG	1 cut(s)	595
BslI	CCNNNNNNNGG	1 cut(s)	286
BsmAI	GTCTC	3 cut(s)	94, 617, 877
BsnI	GGCC	1 cut(s)	926
BsoBI	CYCGRG	1 cut(s)	595
Bsp143I	GATC	3 cut(s)	22, 409, 571
Bsp19I	CCATGG	1 cut(s)	170
BspACI	CCGC	1 cut(s)	898
BspANI	GGCC	1 cut(s)	926
BspCNI	CTCAG	2 cut(s)	9, 277
BspDI	ATCGAT	1 cut(s)	374
BspLI	GGNNCC	1 cut(s)	927
BspPI	GGATC	1 cut(s)	17
BsrDI	GCAATG	1 cut(s)	428
BsrI	ACTGG	1 cut(s)	35
BssECI	CCNNGG	2 cut(s)	170, 417
BssMI	GATC	3 cut(s)	22, 409, 571
BssT1I	CCWWGG	2 cut(s)	170, 417
Bst4CI	ACNGT	3 cut(s)	494, 938, 1047
Bst6I	CTCTTC	2 cut(s)	108, 324
BstC8I	GCNNGC	1 cut(s)	392
BstDEI	CTNAG	2 cut(s)	17, 285
BstDSI	CCRYGG	1 cut(s)	170
BstF5I	GGATG	4 cut(s)	55, 280, 956, 1034
BstKTI	GATC	3 cut(s)	25, 412, 574
BstMAI	GTCTC	3 cut(s)	94, 617, 877
BstMBI	GATC	3 cut(s)	22, 409, 571
BstMWI	GCNNNNNNNGC	2 cut(s)	859, 1040
BstNSI	RCATGY	1 cut(s)	394
BstSFI	CTRYAG	2 cut(s)	10, 1046
BstV1I	GCAGC	1 cut(s)	565
BstV2I	GAAGAC	2 cut(s)	172, 677
Bsu15I	ATCGAT	1 cut(s)	374
Bsu36I	CCTNAGG	1 cut(s)	285
BsuRI	GGCC	1 cut(s)	926
BsuTUI	ATCGAT	1 cut(s)	374
BtgI	CCRYGG	1 cut(s)	170
BtsCI	GGATG	4 cut(s)	55, 280, 956, 1034
BtsIMutI	CAGTG	3 cut(s)	943, 1035, 1043
Cac8I	GCNNGC	1 cut(s)	392
Cfr13I	GGNCC	1 cut(s)	925
ClaI	ATCGAT	1 cut(s)	374
CseI	GACGC	3 cut(s)	172, 671, 868
CspCI	CAANNNNNGTGG	2 cut(s)	1011, 1046
DdeI	CTNAG	2 cut(s)	17, 285
DpnI	GATC	3 cut(s)	24, 411, 573
DpnII	GATC	3 cut(s)	22, 409, 571
DraI	TTTAAA	1 cut(s)	1017
Eam1104I	CTCTTC	2 cut(s)	108, 324
EarI	CTCTTC	2 cut(s)	108, 324
Eco130I	CCWWGG	2 cut(s)	170, 417
Eco32I	GATATC	1 cut(s)	378
Eco81I	CCTNAGG	1 cut(s)	285
Eco88I	CYCGRG	1 cut(s)	595
EcoRV	GATATC	1 cut(s)	378
EcoT14I	CCWWGG	2 cut(s)	170, 417
EcoT22I	ATGCAT	1 cut(s)	392
ErhI	CCWWGG	2 cut(s)	170, 417
FalI	AAGNNNNNCTT	2 cut(s)	986, 1018
FauI	CCCGC	1 cut(s)	905
FauNDI	CATATG	1 cut(s)	848
FblI	GTMKAC	1 cut(s)	489
Fnu4HI	GCNGC	1 cut(s)	579
FokI	GGATG	4 cut(s)	62, 267, 943, 1021
Fsp4HI	GCNGC	1 cut(s)	579
FspBI	CTAG	2 cut(s)	255, 836
GluI	GCNGC	1 cut(s)	579
HaeIII	GGCC	1 cut(s)	926
HgaI	GACGC	3 cut(s)	172, 671, 868
HphI	GGTGA	1 cut(s)	520
Hpy166II	GTNNAC	2 cut(s)	490, 889
Hpy188I	TCNGA	1 cut(s)	1039
Hpy188III	TCNNGA	8 cut(s)	271, 284, 407, 467, 526, 667, 782, 789
Hpy8I	GTNNAC	2 cut(s)	490, 889
Hpy99I	CGWCG	1 cut(s)	862
HpyAV	CCTTC	1 cut(s)	252
HpyCH4III	ACNGT	3 cut(s)	494, 938, 1047
HpyCH4IV	ACGT	1 cut(s)	906
HpyCH4V	TGCA	5 cut(s)	59, 201, 390, 581, 941
HpyF10VI	GCNNNNNNNGC	2 cut(s)	859, 1040
HpyF3I	CTNAG	2 cut(s)	17, 285
HpySE526I	ACGT	1 cut(s)	906
Kzo9I	GATC	3 cut(s)	22, 409, 571
LpnPI	CCDG	4 cut(s)	16, 99, 297, 814
Lsp1109I	GCAGC	1 cut(s)	565
LweI	GCATC	5 cut(s)	460, 909, 950, 965, 1043
MaeI	CTAG	2 cut(s)	255, 836
MaeII	ACGT	1 cut(s)	906
MaeIII	GTNAC	2 cut(s)	64, 231
MalI	GATC	3 cut(s)	24, 411, 573
MboI	GATC	3 cut(s)	22, 409, 571
MboII	GAAGA	8 cut(s)	125, 177, 274, 320, 334, 341, 677, 709
MlyI	GAGTC	2 cut(s)	239, 879
MnlI	CCTC	7 cut(s)	40, 64, 280, 445, 582, 591, 613
Mph1103I	ATGCAT	1 cut(s)	392
MseI	TTAA	8 cut(s)	243, 342, 519, 693, 741, 753, 989, 1016
MslI	CAYNNNNRTG	1 cut(s)	152
MwoI	GCNNNNNNNGC	2 cut(s)	859, 1040
NcoI	CCATGG	1 cut(s)	170
NdeI	CATATG	1 cut(s)	848
NdeII	GATC	3 cut(s)	22, 409, 571
NlaIV	GGNNCC	1 cut(s)	927
NmuCI	GTSAC	1 cut(s)	231
NsiI	ATGCAT	1 cut(s)	392
NspI	RCATGY	1 cut(s)	394
OliI	CACNNNNGTG	1 cut(s)	152
PaeI	GCATGC	1 cut(s)	394
PaeR7I	CTCGAG	1 cut(s)	595
PcsI	WCGNNNNNNNCGW	1 cut(s)	787
PfeI	GAWTC	8 cut(s)	34, 359, 501, 511, 663, 785, 810, 832
PflFI	GACNNNGTC	1 cut(s)	869
PkrI	GCNGC	1 cut(s)	580
PleI	GAGTC	2 cut(s)	238, 878
PpsI	GAGTC	2 cut(s)	238, 878
PshBI	ATTAAT	1 cut(s)	753
PsiI	TTATAA	1 cut(s)	108
Psp1406I	AACGTT	1 cut(s)	906
PspN4I	GGNNCC	1 cut(s)	927
PspPI	GGNCC	1 cut(s)	925
PspXI	VCTCGAGB	1 cut(s)	595
PsyI	GACNNNGTC	1 cut(s)	869
RseI	CAYNNNNRTG	1 cut(s)	152
SaqAI	TTAA	8 cut(s)	243, 342, 519, 693, 741, 753, 989, 1016
SatI	GCNGC	1 cut(s)	579
Sau3AI	GATC	3 cut(s)	22, 409, 571
Sau96I	GGNCC	1 cut(s)	925
SchI	GAGTC	2 cut(s)	239, 879
SfaNI	GCATC	5 cut(s)	460, 909, 950, 965, 1043
SfcI	CTRYAG	2 cut(s)	10, 1046
Sfr274I	CTCGAG	1 cut(s)	595
SlaI	CTCGAG	1 cut(s)	595
SmiMI	CAYNNNNRTG	1 cut(s)	152
SmlI	CTYRAG	1 cut(s)	595
SmoI	CTYRAG	1 cut(s)	595
SphI	GCATGC	1 cut(s)	394
SsiI	CCGC	1 cut(s)	898
SspI	AATATT	2 cut(s)	532, 712
SspMI	CTAG	2 cut(s)	255, 836
StyI	CCWWGG	2 cut(s)	170, 417
TaaI	ACNGT	3 cut(s)	494, 938, 1047
TaiI	ACGT	1 cut(s)	909
TaqI	TCGA	7 cut(s)	374, 525, 574, 596, 602, 790, 857
TfiI	GAWTC	8 cut(s)	34, 359, 501, 511, 663, 785, 810, 832
Tru1I	TTAA	8 cut(s)	243, 342, 519, 693, 741, 753, 989, 1016
Tru9I	TTAA	8 cut(s)	243, 342, 519, 693, 741, 753, 989, 1016
TscAI	CASTG	3 cut(s)	943, 1035, 1050
TseFI	GTSAC	1 cut(s)	231
TseI	GCWGC	1 cut(s)	578
Tsp45I	GTSAC	1 cut(s)	231
TspDTI	ATGAA	6 cut(s)	17, 66, 192, 321, 355, 493
TspGWI	ACGGA	1 cut(s)	882
TspRI	CASTG	3 cut(s)	943, 1035, 1050
Tth111I	GACNNNGTC	1 cut(s)	869
VspI	ATTAAT	1 cut(s)	753
XapI	RAATTY	2 cut(s)	4, 101
XceI	RCATGY	1 cut(s)	394
XcmI	CCANNNNNNNNNTGG	1 cut(s)	967
XhoI	CTCGAG	1 cut(s)	595
XmiI	GTMKAC	1 cut(s)	489
XspI	CTAG	2 cut(s)	255, 836
Zsp2I	ATGCAT	1 cut(s)	392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.