Rmu_sc0001023.1_g000036

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001023.1
Physical Location & Seq
Forward (+)
167910 .. 168356
447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001023.1_g000036.1.cds

Sequence Viewer

Length: 447 bp
atgaacattaagaatgaccatcctgaggtgtgtgaaaaggaacatgaagaagccactttgaagattgaagagaaactcattaaggacacggaagctgattcattcatcacaccgatatccatgtcatgcatgcctaattgtgttcaagatcaacccaaggagaagtcaatgcccattccttttcaagtggaggagttcaagtttcaagatgcttattctaaatttgtctatggtattcgattcatggtgataccttttaattttgaaaatattgaagttgatggcttatcatgttttattcctactaacgatcgagctgcatacaagaggaactcaaggtcgagttcttttcaggtggaggagactaatgtaggacgagatttagccaacttcaacaaagaatctcgaaaagaaagaagcgtctgtacattaagaagaatgatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

17.27

Weight (kDa)

5.33

Isoelectric Point (pI)

64.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 221
AfaI GTAC 1 cut(s) 427
AfiI CCNNNNNNNGG 1 cut(s) 25
AgsI TTSAA 9 cut(s) 61, 68, 146, 185, 199, 206, 266, 275, 394
AluBI AGCT 2 cut(s) 95, 317
AluI AGCT 2 cut(s) 95, 317
Alw26I GTCTC 1 cut(s) 356
ApeKI GCWGC 1 cut(s) 317
ApoI RAATTY 1 cut(s) 221
AsuHPI GGTGA 1 cut(s) 259
AxyI CCTNAGG 1 cut(s) 24
BarI GAAGNNNNNNTAC 2 cut(s) 409, 441
BbvI GCAGC 1 cut(s) 304
BccI CCATC 2 cut(s) 27, 275
BcgI CGANNNNNNTGC 2 cut(s) 299, 333
BcoDI GTCTC 1 cut(s) 356
BisI GCNGC 1 cut(s) 318
BlsI GCNGC 1 cut(s) 319
BmsI GCATC 1 cut(s) 199
BpuEI CTTGAG 1 cut(s) 319
BsaJI CCNNGG 1 cut(s) 156
BsaXI ACNNNNNCTCC 2 cut(s) 185, 215
Bsc4I CCNNNNNNNGG 1 cut(s) 25
Bse21I CCTNAGG 1 cut(s) 24
BseDI CCNNGG 1 cut(s) 156
BseGI GGATG 1 cut(s) 19
BseLI CCNNNNNNNGG 1 cut(s) 25
BseMII CTCAG 1 cut(s) 15
BseRI GAGGAG 2 cut(s) 206, 374
BseXI GCAGC 1 cut(s) 304
Bsh1285I CGRYCG 1 cut(s) 313
BsiEI CGRYCG 1 cut(s) 313
BslI CCNNNNNNNGG 1 cut(s) 25
BsmAI GTCTC 1 cut(s) 356
Bsp1407I TGTACA 1 cut(s) 425
Bsp143I GATC 2 cut(s) 148, 310
BspCNI CTCAG 1 cut(s) 16
BsrGI TGTACA 1 cut(s) 425
BssECI CCNNGG 1 cut(s) 156
BssMI GATC 2 cut(s) 148, 310
BssT1I CCWWGG 1 cut(s) 156
Bst6I CTCTTC 1 cut(s) 63
BstAUI TGTACA 1 cut(s) 425
BstC8I GCNNGC 1 cut(s) 131
BstDEI CTNAG 1 cut(s) 24
BstF5I GGATG 1 cut(s) 19
BstKTI GATC 2 cut(s) 151, 313
BstMAI GTCTC 1 cut(s) 356
BstMBI GATC 2 cut(s) 148, 310
BstMCI CGRYCG 1 cut(s) 313
BstNSI RCATGY 1 cut(s) 133
BstV1I GCAGC 1 cut(s) 304
Bsu36I CCTNAGG 1 cut(s) 24
BtsCI GGATG 1 cut(s) 19
Cac8I GCNNGC 1 cut(s) 131
CseI GACGC 1 cut(s) 409
Csp6I GTAC 1 cut(s) 426
CviAII CATG 6 cut(s) 44, 121, 126, 130, 244, 291
CviJI RGCY 5 cut(s) 53, 95, 285, 317, 386
CviKI_1 RGCY 5 cut(s) 53, 95, 285, 317, 386
CviQI GTAC 1 cut(s) 426
DdeI CTNAG 1 cut(s) 24
DpnI GATC 2 cut(s) 150, 312
DpnII GATC 2 cut(s) 148, 310
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
Eco130I CCWWGG 1 cut(s) 156
Eco32I GATATC 1 cut(s) 117
Eco81I CCTNAGG 1 cut(s) 24
EcoRV GATATC 1 cut(s) 117
EcoT14I CCWWGG 1 cut(s) 156
EcoT22I ATGCAT 1 cut(s) 131
ErhI CCWWGG 1 cut(s) 156
FaeI CATG 6 cut(s) 47, 124, 129, 133, 247, 294
FaiI YATR 8 cut(s) 45, 122, 127, 131, 231, 245, 292, 322
FatI CATG 6 cut(s) 43, 120, 125, 129, 243, 290
Fnu4HI GCNGC 1 cut(s) 318
FokI GGATG 1 cut(s) 6
Fsp4HI GCNGC 1 cut(s) 318
GluI GCNGC 1 cut(s) 318
HgaI GACGC 1 cut(s) 409
Hin1II CATG 6 cut(s) 47, 124, 129, 133, 247, 294
HinfI GANTC 3 cut(s) 98, 240, 401
HphI GGTGA 1 cut(s) 259
Hpy188III TCNNGA 4 cut(s) 23, 146, 206, 405
HpyCH4V TGCA 2 cut(s) 129, 320
HpyF3I CTNAG 1 cut(s) 24
Hsp92II CATG 6 cut(s) 47, 124, 129, 133, 247, 294
Kzo9I GATC 2 cut(s) 148, 310
LpnPI CCDG 2 cut(s) 36, 338
Lsp1109I GCAGC 1 cut(s) 304
LweI GCATC 1 cut(s) 199
MalI GATC 2 cut(s) 150, 312
MboI GATC 2 cut(s) 148, 310
MboII GAAGA 4 cut(s) 59, 73, 80, 447
MluCI AATT 3 cut(s) 136, 221, 259
MnlI CCTC 4 cut(s) 19, 184, 321, 352
Mph1103I ATGCAT 1 cut(s) 131
MseI TTAA 4 cut(s) 9, 81, 258, 431
NdeII GATC 2 cut(s) 148, 310
NlaIII CATG 6 cut(s) 47, 124, 129, 133, 247, 294
NsiI ATGCAT 1 cut(s) 131
NspI RCATGY 1 cut(s) 133
PaeI GCATGC 1 cut(s) 133
PfeI GAWTC 3 cut(s) 98, 240, 401
PkrI GCNGC 1 cut(s) 319
Ple19I CGATCG 1 cut(s) 313
PvuI CGATCG 1 cut(s) 313
RsaI GTAC 1 cut(s) 427
RsaNI GTAC 1 cut(s) 426
SaqAI TTAA 4 cut(s) 9, 81, 258, 431
SatI GCNGC 1 cut(s) 318
Sau3AI GATC 2 cut(s) 148, 310
SetI ASST 6 cut(s) 30, 97, 256, 319, 341, 357
SfaNI GCATC 1 cut(s) 199
SmlI CTYRAG 1 cut(s) 334
SmoI CTYRAG 1 cut(s) 334
SphI GCATGC 1 cut(s) 133
Sse9I AATT 3 cut(s) 136, 221, 259
SspI AATATT 1 cut(s) 271
StyI CCWWGG 1 cut(s) 156
TaqI TCGA 4 cut(s) 238, 313, 341, 406
TasI AATT 3 cut(s) 136, 221, 259
TatI WGTACW 1 cut(s) 425
TfiI GAWTC 3 cut(s) 98, 240, 401
Tru1I TTAA 4 cut(s) 9, 81, 258, 431
Tru9I TTAA 4 cut(s) 9, 81, 258, 431
TseI GCWGC 1 cut(s) 317
TspDTI ATGAA 5 cut(s) 17, 60, 90, 94, 232
TspGWI ACGGA 1 cut(s) 104
XapI RAATTY 1 cut(s) 221
XceI RCATGY 1 cut(s) 133
Zsp2I ATGCAT 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.