RchiOBHm_Chr2g0160931

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001259
Physical Location & Seq
Reverse (-)
76829941 .. 76832946
3006 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52933

Sequence Viewer

Length: 1209 bp
ATGAGCCCCACTAATATCTTCAACTACAACCATGTTACAAACGAAAACGAAAGTTATTTCACCTATTCTGTTTATTACCCCAATGAAGTATCTCGATTAGTTATGTACTTCTTGAGGCAGGTTTGGCAACTAACATGGAAGACCAATAAATGGAATTTGCTGAGTGATCCATACTGGATTCCATTTGGAGAGGATGAATATGCACAAGTAACAGAGGTTTGTAAAGTTCTTGTCTCTATGGGAAAATTTTATAAAGAAGAGATTACTTGTCATGTGATTGACATGGACGACACTAATGTGCTTTTTGGAAGACCATGGCATGAAAAAGTCAAAGGTGGTTATTGCAAAGACAACACATATTTATTTAGGTGGGAGTCGCACAAAATTAAAATCAAGCCTAGAAGGAAGATCGTCAAGAATGACCATCCTGAGGTGTGTCAAAAGGAACATGAAGAAGCAACTTTGAAGATTGAAGAGAAACTCATTAAGGTTAAGGAAGCTGATTCATTCATCACATCGATATCCATGTCATGCATGTCTAATTGTGTTCAAGATCAACCCAAGGAGAAGTCATTGCCCATTCCTTTTCAAGTGGAGGAGTTCAAGTTTCAAGATGCTTATTCTAAACTTGTCTACGGTATTCGATTCATGGTGATACCTTTTAATTTTGAAAATATTGAAGTTGATAGTTTATCATGTGTTTTTCCTTCTAACGATCGAGCTGCATACAAGAGGAACTCGAGGTCGAGTTCTTTTCAGGTGGAAGAGACTGATGTAGGACAAGATTTTAGCCAACTTCAACAAAGAATCTCGAAAAGAAAGAAGCATCTGCACATTACGAAAAATGATTTGAATATTGAAAATTGGTATTCAAATAGGCTTCTTAATGATGGAATTAATCATAAATTACTCTTTTGGATATATCAGGATTCTCGATCGAAATCTTGGTTGGGATTCCAAATATATGTTTGTCTATTTCTTGTGGATCGGAAGAAAACTACAAGGAAGAGAAGGAAGTGTCAGAGGAAACAGGGTGAGATCATAAGTAACATTGGTGGAAAGAATGACACAGAACTACCAGTGTTTGACTTGAAGAGTATATTAGCTGCTACTGAAGACTTCTCTGCAGCAAATAAACTGGATGAGAGAGGATTTGGCCCTGTTTATAAGGTGTTTGAGCCCAAAAGCATTTTTGGCAAGATCCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

402

Amino Acids

47.52

Weight (kDa)

8.81

Isoelectric Point (pI)

51.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 252, 1167
Acc36I ACCTGC 1 cut(s) 109
AccB7I CCANNNNNTGG 1 cut(s) 150
AccI GTMKAC 1 cut(s) 633
AclWI GGATC 3 cut(s) 161, 993, 1195
AcsI RAATTY 2 cut(s) 154, 245
AcuI CTGAAG 1 cut(s) 1134
AfaI GTAC 1 cut(s) 107
AfiI CCNNNNNNNGG 2 cut(s) 150, 430
AjuI GAANNNNNNNTTGG 2 cut(s) 932, 964
AleI CACNNNNGTG 1 cut(s) 296
AluBI AGCT 3 cut(s) 500, 722, 1106
AluI AGCT 3 cut(s) 500, 722, 1106
Alw26I GTCTC 2 cut(s) 238, 761
AlwI GGATC 3 cut(s) 161, 993, 1195
Ama87I CYCGRG 1 cut(s) 739
AoxI GGCC 1 cut(s) 1156
ApeKI GCWGC 3 cut(s) 722, 1106, 1127
ApoI RAATTY 2 cut(s) 154, 245
AseI ATTAAT 1 cut(s) 897
AspS9I GGNCC 1 cut(s) 1157
AsuHPI GGTGA 3 cut(s) 52, 664, 1046
AvaI CYCGRG 1 cut(s) 739
AxyI CCTNAGG 1 cut(s) 429
BanII GRGCYC 2 cut(s) 8, 1182
BbsI GAAGAC 3 cut(s) 146, 316, 1122
BbvI GCAGC 3 cut(s) 709, 1093, 1139
BccI CCATC 2 cut(s) 432, 884
BcgI CGANNNNNNTGC 2 cut(s) 704, 738
BcoDI GTCTC 2 cut(s) 238, 761
BfaI CTAG 1 cut(s) 399
BfmI CTRYAG 1 cut(s) 1125
BfuAI ACCTGC 1 cut(s) 109
BisI GCNGC 3 cut(s) 723, 1107, 1128
BlsI GCNGC 3 cut(s) 724, 1108, 1129
BmeT110I CYCGRG 1 cut(s) 739
BmgT120I GGNCC 1 cut(s) 1157
BmsI GCATC 2 cut(s) 604, 835
BpiI GAAGAC 3 cut(s) 146, 316, 1122
BpuEI CTTGAG 1 cut(s) 133
Bsa29I ATCGAT 1 cut(s) 518
BsaBI GATNNNNATC 1 cut(s) 940
BsaJI CCNNGG 2 cut(s) 314, 561
BsaXI ACNNNNNCTCC 2 cut(s) 590, 620
Bsc4I CCNNNNNNNGG 2 cut(s) 150, 430
Bse1I ACTGG 3 cut(s) 179, 1079, 1143
Bse21I CCTNAGG 1 cut(s) 429
Bse3DI GCAATG 1 cut(s) 572
Bse8I GATNNNNATC 1 cut(s) 940
BseCI ATCGAT 1 cut(s) 518
BseDI CCNNGG 2 cut(s) 314, 561
BseGI GGATG 3 cut(s) 199, 424, 1147
BseJI GATNNNNATC 1 cut(s) 940
BseLI CCNNNNNNNGG 2 cut(s) 150, 430
BseMI GCAATG 1 cut(s) 572
BseMII CTCAG 2 cut(s) 152, 420
BseNI ACTGG 3 cut(s) 179, 1079, 1143
BseRI GAGGAG 1 cut(s) 611
BseXI GCAGC 3 cut(s) 709, 1093, 1139
BsgI GTGCAG 1 cut(s) 815
Bsh1285I CGRYCG 2 cut(s) 718, 938
BshFI GGCC 1 cut(s) 1158
BshVI ATCGAT 1 cut(s) 518
BsiEI CGRYCG 2 cut(s) 718, 938
BsiHKCI CYCGRG 1 cut(s) 739
BslI CCNNNNNNNGG 2 cut(s) 150, 430
BsmAI GTCTC 2 cut(s) 238, 761
BsnI GGCC 1 cut(s) 1158
BsoBI CYCGRG 1 cut(s) 739
Bsp1286I GDGCHC 2 cut(s) 8, 1182
Bsp143I GATC 8 cut(s) 166, 408, 553, 715, 935, 985, 1038, 1200
Bsp19I CCATGG 1 cut(s) 314
BspANI GGCC 1 cut(s) 1158
BspCNI CTCAG 2 cut(s) 153, 421
BspDI ATCGAT 1 cut(s) 518
BspMAI CTGCAG 1 cut(s) 1129
BspMI ACCTGC 1 cut(s) 109
BspPI GGATC 3 cut(s) 161, 993, 1195
BsrDI GCAATG 1 cut(s) 572
BsrI ACTGG 3 cut(s) 179, 1079, 1143
BssECI CCNNGG 2 cut(s) 314, 561
BssMI GATC 8 cut(s) 166, 408, 553, 715, 935, 985, 1038, 1200
BssT1I CCWWGG 2 cut(s) 314, 561
Bst4CI ACNGT 1 cut(s) 638
Bst6I CTCTTC 5 cut(s) 252, 468, 759, 1001, 1088
BstDEI CTNAG 2 cut(s) 161, 429
BstDSI CCRYGG 1 cut(s) 314
BstF5I GGATG 3 cut(s) 199, 424, 1147
BstKTI GATC 8 cut(s) 169, 411, 556, 718, 938, 988, 1041, 1203
BstMAI GTCTC 2 cut(s) 238, 761
BstMBI GATC 8 cut(s) 166, 408, 553, 715, 935, 985, 1038, 1200
BstMCI CGRYCG 2 cut(s) 718, 938
BstMWI GCNNNNNNNGC 2 cut(s) 124, 1194
BstNSI RCATGY 1 cut(s) 538
BstSFI CTRYAG 1 cut(s) 1125
BstV1I GCAGC 3 cut(s) 709, 1093, 1139
BstV2I GAAGAC 3 cut(s) 146, 316, 1122
BstX2I RGATCY 1 cut(s) 1200
BstYI RGATCY 1 cut(s) 1200
Bsu15I ATCGAT 1 cut(s) 518
Bsu36I CCTNAGG 1 cut(s) 429
BsuRI GGCC 1 cut(s) 1158
BsuTUI ATCGAT 1 cut(s) 518
BtgI CCRYGG 1 cut(s) 314
BtsCI GGATG 3 cut(s) 199, 424, 1147
BtsIMutI CAGTG 1 cut(s) 1086
BveI ACCTGC 1 cut(s) 109
Cfr13I GGNCC 1 cut(s) 1157
ClaI ATCGAT 1 cut(s) 518
Csp6I GTAC 1 cut(s) 106
CviJI RGCY 9 cut(s) 6, 397, 500, 722, 792, 880, 1106, 1158, 1180
CviKI_1 RGCY 9 cut(s) 6, 397, 500, 722, 792, 880, 1106, 1158, 1180
CviQI GTAC 1 cut(s) 106
DdeI CTNAG 2 cut(s) 161, 429
DpnI GATC 8 cut(s) 168, 410, 555, 717, 937, 987, 1040, 1202
DpnII GATC 8 cut(s) 166, 408, 553, 715, 935, 985, 1038, 1200
Eam1104I CTCTTC 5 cut(s) 252, 468, 759, 1001, 1088
EarI CTCTTC 5 cut(s) 252, 468, 759, 1001, 1088
Eco130I CCWWGG 2 cut(s) 314, 561
Eco24I GRGCYC 2 cut(s) 8, 1182
Eco32I GATATC 1 cut(s) 522
Eco57I CTGAAG 1 cut(s) 1134
Eco81I CCTNAGG 1 cut(s) 429
Eco88I CYCGRG 1 cut(s) 739
EcoRV GATATC 1 cut(s) 522
EcoT14I CCWWGG 2 cut(s) 314, 561
EcoT22I ATGCAT 1 cut(s) 536
EcoT38I GRGCYC 2 cut(s) 8, 1182
ErhI CCWWGG 2 cut(s) 314, 561
FblI GTMKAC 1 cut(s) 633
Fnu4HI GCNGC 3 cut(s) 723, 1107, 1128
FokI GGATG 3 cut(s) 206, 411, 1154
FriOI GRGCYC 2 cut(s) 8, 1182
Fsp4HI GCNGC 3 cut(s) 723, 1107, 1128
FspBI CTAG 1 cut(s) 399
GluI GCNGC 3 cut(s) 723, 1107, 1128
HaeIII GGCC 1 cut(s) 1158
HinfI GANTC 7 cut(s) 178, 374, 503, 645, 807, 929, 954
HphI GGTGA 3 cut(s) 52, 664, 1046
Hpy166II GTNNAC 1 cut(s) 634
Hpy188I TCNGA 2 cut(s) 990, 1023
Hpy188III TCNNGA 9 cut(s) 93, 112, 415, 428, 551, 611, 811, 926, 933
Hpy8I GTNNAC 1 cut(s) 634
HpyAV CCTTC 3 cut(s) 396, 717, 1005
HpyCH4III ACNGT 1 cut(s) 638
HpyCH4V TGCA 6 cut(s) 203, 345, 534, 725, 832, 1127
HpyF10VI GCNNNNNNNGC 2 cut(s) 124, 1194
HpyF3I CTNAG 2 cut(s) 161, 429
Kzo9I GATC 8 cut(s) 166, 408, 553, 715, 935, 985, 1038, 1200
LpnPI CCDG 9 cut(s) 104, 160, 441, 743, 911, 1016, 1092, 1124, 1173
Lsp1109I GCAGC 3 cut(s) 709, 1093, 1139
LweI GCATC 2 cut(s) 604, 835
MaeI CTAG 1 cut(s) 399
MaeIII GTNAC 3 cut(s) 34, 208, 1046
MalI GATC 8 cut(s) 168, 410, 555, 717, 937, 987, 1040, 1202
MboI GATC 8 cut(s) 166, 408, 553, 715, 935, 985, 1038, 1200
MflI RGATCY 1 cut(s) 1200
MhlI GDGCHC 2 cut(s) 8, 1182
MluCI AATT 8 cut(s) 154, 245, 384, 541, 664, 862, 894, 905
MlyI GAGTC 1 cut(s) 383
MnlI CCTC 9 cut(s) 108, 184, 208, 424, 589, 726, 735, 1017, 1142
Mph1103I ATGCAT 1 cut(s) 536
MseI TTAA 7 cut(s) 387, 486, 492, 663, 885, 897, 1207
MslI CAYNNNNRTG 1 cut(s) 296
MwoI GCNNNNNNNGC 2 cut(s) 124, 1194
NcoI CCATGG 1 cut(s) 314
NdeII GATC 8 cut(s) 166, 408, 553, 715, 935, 985, 1038, 1200
NsiI ATGCAT 1 cut(s) 536
NspI RCATGY 1 cut(s) 538
OliI CACNNNNGTG 1 cut(s) 296
PaeR7I CTCGAG 1 cut(s) 739
PfeI GAWTC 6 cut(s) 178, 503, 645, 807, 929, 954
PflMI CCANNNNNTGG 1 cut(s) 150
PkrI GCNGC 3 cut(s) 724, 1108, 1129
Ple19I CGATCG 2 cut(s) 718, 938
PleI GAGTC 1 cut(s) 382
PpsI GAGTC 1 cut(s) 382
PshBI ATTAAT 1 cut(s) 897
PsiI TTATAA 2 cut(s) 252, 1167
PspPI GGNCC 1 cut(s) 1157
PspXI VCTCGAGB 1 cut(s) 739
PstI CTGCAG 1 cut(s) 1129
PsuI RGATCY 1 cut(s) 1200
PvuI CGATCG 2 cut(s) 718, 938
RsaI GTAC 1 cut(s) 107
RsaNI GTAC 1 cut(s) 106
RseI CAYNNNNRTG 1 cut(s) 296
SaqAI TTAA 7 cut(s) 387, 486, 492, 663, 885, 897, 1207
SatI GCNGC 3 cut(s) 723, 1107, 1128
Sau3AI GATC 8 cut(s) 166, 408, 553, 715, 935, 985, 1038, 1200
Sau96I GGNCC 1 cut(s) 1157
SchI GAGTC 1 cut(s) 383
SduI GDGCHC 2 cut(s) 8, 1182
SfaNI GCATC 2 cut(s) 604, 835
SfcI CTRYAG 1 cut(s) 1125
Sfr274I CTCGAG 1 cut(s) 739
SlaI CTCGAG 1 cut(s) 739
SmiMI CAYNNNNRTG 1 cut(s) 296
SmlI CTYRAG 2 cut(s) 112, 739
SmoI CTYRAG 2 cut(s) 112, 739
Sse9I AATT 8 cut(s) 154, 245, 384, 541, 664, 862, 894, 905
SspI AATATT 2 cut(s) 676, 856
SspMI CTAG 1 cut(s) 399
StyI CCWWGG 2 cut(s) 314, 561
TaaI ACNGT 1 cut(s) 638
TaqI TCGA 9 cut(s) 94, 518, 643, 718, 740, 746, 812, 934, 938
TasI AATT 8 cut(s) 154, 245, 384, 541, 664, 862, 894, 905
TatI WGTACW 1 cut(s) 105
TfiI GAWTC 6 cut(s) 178, 503, 645, 807, 929, 954
Tru1I TTAA 7 cut(s) 387, 486, 492, 663, 885, 897, 1207
Tru9I TTAA 7 cut(s) 387, 486, 492, 663, 885, 897, 1207
TscAI CASTG 1 cut(s) 1086
TseI GCWGC 3 cut(s) 722, 1106, 1127
TspDTI ATGAA 7 cut(s) 99, 210, 336, 465, 495, 499, 637
TspRI CASTG 1 cut(s) 1086
Van91I CCANNNNNTGG 1 cut(s) 150
VspI ATTAAT 1 cut(s) 897
XapI RAATTY 2 cut(s) 154, 245
XceI RCATGY 1 cut(s) 538
XhoI CTCGAG 1 cut(s) 739
XmiI GTMKAC 1 cut(s) 633
XspI CTAG 1 cut(s) 399
Zsp2I ATGCAT 1 cut(s) 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.