Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001259

Physical Location & Seq

Genomic Coordinates Forward (+)

3113020 .. 3124251

Gene Structure 11232 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG039600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGTAGTGTCTATCTCTGTCTGCTGTTGCACATGTTCAAAAACTCAAGAGACAAGAACCACGCGGTGGGAGTCGCACAAAATTAAAATCAAGCCTAGAAGGAAGAACATCAAGAATGACCATCTTGAGGTGTGTGAAAAGGAACATGAAGAAGCAACTTTGAAGATTGAAGAGAAACTCATTAAGGATAAGGAAGCTGATTCATTCATCACATCGATATCCATGTCATGCATGCCTAATTGTGTTCAAGATCAACCCAAGGAGAAGTCATTGCCCATTCCTTTTCAAGTGGAGGAGTTCAAGTTTCAAGATGCTTATTCTAAACTTGTCTACGGTATTGGATTCATGAGGGGACGGATCACAAAACCCTCGGCAGAATCCTCGTATACAACTATAATGATATTACCGTACATTAATGTGAATTTGGATTTTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

145

Amino Acids

16.8

Weight (kDa)

7.55

Isoelectric Point (pI)

46.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001259)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13320
fragaria_vesca	FvH4_5g25692
rosa_chinensis	RchiOBHm_Chr2g0137451 RchiOBHm_Chr2g0160931 RchiOBHm_Chr3g0448801 RchiOBHm_Chr3g0478501 RchiOBHm_Chr4g0401031 RchiOBHm_Chr4g0434691 RchiOBHm_Chr5g0023581 RchiOBHm_Chr5g0058431 RchiOBHm_Chr6g0250181 RchiOBHm_Chr6g0290461 RchiOBHm_Chr6g0300101 RchiOBHm_Chr6g0310791 RchiOBHm_Chr7g0197901 RchiOBHm_Chr7g0228641
rosa_multiflora	Rmu_co8205962.1_g000001 Rmu_sc0000423.1_g000017 Rmu_sc0000639.1_g000014 Rmu_sc0000753.1_g000043 Rmu_sc0001023.1_g000036 Rmu_sc0001492.1_g000004 Rmu_sc0002038.1_g000025 Rmu_sc0002761.1_g000007 Rmu_sc0002986.1_g000050 Rmu_sc0003383.1_g000016 Rmu_sc0003627.1_g000009 Rmu_sc0004345.1_g000005 Rmu_sc0006770.1_g000009 Rmu_sc0008421.1_g000002 Rmu_sc0020916.1_g000001 Rmu_sc0026853.1_g000001 Rmu_ssc0000225.1_g000001 Rmu_ssc0000446.1_g000021
rosa_roxburghii	Rroxscaffold_1G00014750 Rroxscaffold_1G00022410 Rroxscaffold_2G00095780 Rroxscaffold_2G00135550 Rroxscaffold_4G00325760 Rroxscaffold_4G00331060 Rroxscaffold_6G00402470 Rroxscaffold_6G00427850
rosa_samantha	Rh1DG013300 Rh2AG039600 Rh2AG319100 Rh2AG482400 Rh2AG563800 Rh3CG037400 Rh4DG115600 Rh5DG036700 Rh5DG232400 Rh5DG570600 Rh6CG188400 Rh7DG052000 Rh7DG402600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	66
AccI	GTMKAC	2 cut(s)	330, 386
AccII	CGCG	1 cut(s)	64
AciI	CCGC	1 cut(s)	64
AclWI	GGATC	1 cut(s)	365
AcsI	RAATTY	1 cut(s)	421
AdeI	CACNNNGTG	1 cut(s)	66
AfaI	GTAC	1 cut(s)	410
AfiI	CCNNNNNNNGG	2 cut(s)	66, 127
AflIII	ACRYGT	1 cut(s)	32
AgsI	TTSAA	7 cut(s)	39, 163, 170, 248, 287, 301, 308
AluBI	AGCT	1 cut(s)	197
AluI	AGCT	1 cut(s)	197
Alw26I	GTCTC	1 cut(s)	44
AlwI	GGATC	1 cut(s)	365
ApoI	RAATTY	1 cut(s)	421
AseI	ATTAAT	1 cut(s)	414
BccI	CCATC	1 cut(s)	129
BcgI	CGANNNNNNTGC	2 cut(s)	363, 397
BcoDI	GTCTC	1 cut(s)	44
BfaI	CTAG	1 cut(s)	96
BmsI	GCATC	1 cut(s)	301
BpuEI	CTTGAG	2 cut(s)	30, 146
Bsa29I	ATCGAT	1 cut(s)	215
BsaJI	CCNNGG	2 cut(s)	258, 369
BsaXI	ACNNNNNCTCC	2 cut(s)	287, 317
Bsc4I	CCNNNNNNNGG	2 cut(s)	66, 127
Bse3DI	GCAATG	1 cut(s)	269
BseCI	ATCGAT	1 cut(s)	215
BseDI	CCNNGG	2 cut(s)	258, 369
BseLI	CCNNNNNNNGG	2 cut(s)	66, 127
BseMI	GCAATG	1 cut(s)	269
BseRI	GAGGAG	1 cut(s)	308
Bsh1236I	CGCG	1 cut(s)	64
BshVI	ATCGAT	1 cut(s)	215
BslFI	GGGAC	1 cut(s)	366
BslI	CCNNNNNNNGG	2 cut(s)	66, 127
BsmAI	GTCTC	1 cut(s)	44
BsmFI	GGGAC	1 cut(s)	366
Bsp143I	GATC	2 cut(s)	250, 357
BspACI	CCGC	1 cut(s)	64
BspDI	ATCGAT	1 cut(s)	215
BspFNI	CGCG	1 cut(s)	64
BspHI	TCATGA	1 cut(s)	345
BspPI	GGATC	1 cut(s)	365
BsrDI	GCAATG	1 cut(s)	269
BssECI	CCNNGG	2 cut(s)	258, 369
BssMI	GATC	2 cut(s)	250, 357
BssNAI	GTATAC	1 cut(s)	387
BssT1I	CCWWGG	1 cut(s)	258
Bst1107I	GTATAC	1 cut(s)	387
Bst4CI	ACNGT	2 cut(s)	335, 408
Bst6I	CTCTTC	1 cut(s)	165
BstC8I	GCNNGC	1 cut(s)	233
BstFNI	CGCG	1 cut(s)	64
BstKTI	GATC	2 cut(s)	253, 360
BstMAI	GTCTC	1 cut(s)	44
BstMBI	GATC	2 cut(s)	250, 357
BstNSI	RCATGY	2 cut(s)	36, 235
BstUI	CGCG	1 cut(s)	64
BstZ17I	GTATAC	1 cut(s)	387
Bsu15I	ATCGAT	1 cut(s)	215
BsuTUI	ATCGAT	1 cut(s)	215
Cac8I	GCNNGC	1 cut(s)	233
CciI	TCATGA	1 cut(s)	345
ClaI	ATCGAT	1 cut(s)	215
Csp6I	GTAC	1 cut(s)	409
CviAII	CATG	6 cut(s)	33, 146, 223, 228, 232, 346
CviJI	RGCY	2 cut(s)	94, 197
CviKI_1	RGCY	2 cut(s)	94, 197
CviQI	GTAC	1 cut(s)	409
DpnI	GATC	2 cut(s)	252, 359
DpnII	GATC	2 cut(s)	250, 357
DraIII	CACNNNGTG	1 cut(s)	66
Eam1104I	CTCTTC	1 cut(s)	165
EarI	CTCTTC	1 cut(s)	165
Eco130I	CCWWGG	1 cut(s)	258
Eco32I	GATATC	1 cut(s)	219
EcoRV	GATATC	1 cut(s)	219
EcoT14I	CCWWGG	1 cut(s)	258
EcoT22I	ATGCAT	1 cut(s)	233
ErhI	CCWWGG	1 cut(s)	258
FaeI	CATG	6 cut(s)	36, 149, 226, 231, 235, 349
FaiI	YATR	8 cut(s)	34, 147, 224, 229, 233, 347, 387, 395
FaqI	GGGAC	1 cut(s)	366
FatI	CATG	6 cut(s)	32, 145, 222, 227, 231, 345
FblI	GTMKAC	2 cut(s)	330, 386
FspBI	CTAG	1 cut(s)	96
Hin1II	CATG	6 cut(s)	36, 149, 226, 231, 235, 349
HinfI	GANTC	4 cut(s)	71, 200, 342, 377
Hpy166II	GTNNAC	2 cut(s)	331, 387
Hpy188III	TCNNGA	6 cut(s)	47, 112, 125, 248, 308, 346
Hpy8I	GTNNAC	2 cut(s)	331, 387
HpyAV	CCTTC	1 cut(s)	93
HpyCH4III	ACNGT	2 cut(s)	335, 408
HpyCH4V	TGCA	2 cut(s)	30, 231
Hsp92II	CATG	6 cut(s)	36, 149, 226, 231, 235, 349
Kzo9I	GATC	2 cut(s)	250, 357
LweI	GCATC	1 cut(s)	301
MaeI	CTAG	1 cut(s)	96
MalI	GATC	2 cut(s)	252, 359
MboI	GATC	2 cut(s)	250, 357
MboII	GAAGA	4 cut(s)	115, 161, 175, 182
MluCI	AATT	3 cut(s)	81, 238, 421
MlyI	GAGTC	1 cut(s)	80
MnlI	CCTC	5 cut(s)	121, 286, 342, 379, 391
Mph1103I	ATGCAT	1 cut(s)	233
MseI	TTAA	3 cut(s)	84, 183, 414
MslI	CAYNNNNRTG	1 cut(s)	416
MvnI	CGCG	1 cut(s)	64
NdeII	GATC	2 cut(s)	250, 357
NlaIII	CATG	6 cut(s)	36, 149, 226, 231, 235, 349
NmeAIII	GCCGAG	1 cut(s)	350
NsiI	ATGCAT	1 cut(s)	233
NspI	RCATGY	2 cut(s)	36, 235
PaeI	GCATGC	1 cut(s)	235
PagI	TCATGA	1 cut(s)	345
PciI	ACATGT	1 cut(s)	32
PfeI	GAWTC	3 cut(s)	200, 342, 377
PflMI	CCANNNNNTGG	1 cut(s)	66
PleI	GAGTC	1 cut(s)	79
PpsI	GAGTC	1 cut(s)	79
PscI	ACATGT	1 cut(s)	32
PshBI	ATTAAT	1 cut(s)	414
RsaI	GTAC	1 cut(s)	410
RsaNI	GTAC	1 cut(s)	409
RseI	CAYNNNNRTG	1 cut(s)	416
SaqAI	TTAA	3 cut(s)	84, 183, 414
Sau3AI	GATC	2 cut(s)	250, 357
SchI	GAGTC	1 cut(s)	80
SetI	ASST	2 cut(s)	132, 199
SfaNI	GCATC	1 cut(s)	301
SmiMI	CAYNNNNRTG	1 cut(s)	416
SmlI	CTYRAG	2 cut(s)	45, 125
SmoI	CTYRAG	2 cut(s)	45, 125
SphI	GCATGC	1 cut(s)	235
Sse9I	AATT	3 cut(s)	81, 238, 421
SsiI	CCGC	1 cut(s)	64
SspMI	CTAG	1 cut(s)	96
StyI	CCWWGG	1 cut(s)	258
TaaI	ACNGT	2 cut(s)	335, 408
TaqI	TCGA	1 cut(s)	215
TasI	AATT	3 cut(s)	81, 238, 421
TfiI	GAWTC	3 cut(s)	200, 342, 377
Tru1I	TTAA	3 cut(s)	84, 183, 414
Tru9I	TTAA	3 cut(s)	84, 183, 414
TspDTI	ATGAA	4 cut(s)	162, 192, 196, 334
TspGWI	ACGGA	1 cut(s)	370
Van91I	CCANNNNNTGG	1 cut(s)	66
VspI	ATTAAT	1 cut(s)	414
XapI	RAATTY	1 cut(s)	421
XceI	RCATGY	2 cut(s)	36, 235
XmiI	GTMKAC	2 cut(s)	330, 386
XspI	CTAG	1 cut(s)	96
Zsp2I	ATGCAT	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.