Rmu_ssc0000225.1_g000001

Belongs to the glycosyl hydrolase 18 family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000225.1
Physical Location & Seq
Forward (+)
183 .. 884
702 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000225.1_g000001.1.cds

Sequence Viewer

Length: 642 bp
atgttcgagaatgatgtggtggcatcgaatgttaagctgtctgttccacctgttgtggaggttgtctttgcaatacccacctttgatgatttcatgccatggtggtgggagtcgcacaaaattaaaatcaagcctgaaaggaataacatcaagaatgaccatcctgaggtgtgtgaaaaggaacatgaagaagccactttgaagattgaagagaaactcattaaggacaaggaagctgattcattcatcacattgatatccatgtcatgcatgcctaattgtgttcaagatcaacccaaggagaagtcaatgcccattccttttcaagtggacgagttcaagtttcaagatgcttattctaaacttgtctacggtattggattcatggtgataccttttaatttcgagaatattgaagttgatggcttatcatgttttattcctactaatgatcgagctgcatacaagaggaactcgaggtcgagttcttttcaagtggaggagactgatgtagaacgagattttacccaatttcaacaaagaatctcgaaaagaaagaagcatcttcacatcaagaagaataatttgaatattgaaaactggtattcaaatagacttaaatggtggttaattataacttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

213

Amino Acids

25.24

Weight (kDa)

5.81

Isoelectric Point (pI)

49.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 635
AccI GTMKAC 1 cut(s) 369
AfiI CCNNNNNNNGG 1 cut(s) 166
AluBI AGCT 3 cut(s) 37, 236, 458
AluI AGCT 3 cut(s) 37, 236, 458
Alw26I GTCTC 1 cut(s) 497
Ama87I CYCGRG 1 cut(s) 475
ApeKI GCWGC 1 cut(s) 458
AsuHPI GGTGA 1 cut(s) 400
AvaI CYCGRG 1 cut(s) 475
AxyI CCTNAGG 1 cut(s) 165
BbvI GCAGC 1 cut(s) 445
BccI CCATC 2 cut(s) 168, 416
BcoDI GTCTC 1 cut(s) 497
BisI GCNGC 1 cut(s) 459
BlsI GCNGC 1 cut(s) 460
BmeT110I CYCGRG 1 cut(s) 475
BmsI GCATC 3 cut(s) 32, 340, 571
BsaJI CCNNGG 2 cut(s) 98, 297
Bsc4I CCNNNNNNNGG 1 cut(s) 166
Bse1I ACTGG 1 cut(s) 605
Bse21I CCTNAGG 1 cut(s) 165
BseDI CCNNGG 2 cut(s) 98, 297
BseGI GGATG 1 cut(s) 160
BseLI CCNNNNNNNGG 1 cut(s) 166
BseMII CTCAG 1 cut(s) 156
BseNI ACTGG 1 cut(s) 605
BseRI GAGGAG 1 cut(s) 515
BseXI GCAGC 1 cut(s) 445
BsiHKCI CYCGRG 1 cut(s) 475
BslI CCNNNNNNNGG 1 cut(s) 166
BsmAI GTCTC 1 cut(s) 497
BsoBI CYCGRG 1 cut(s) 475
Bsp143I GATC 2 cut(s) 289, 451
Bsp19I CCATGG 1 cut(s) 98
BspCNI CTCAG 1 cut(s) 157
BsrI ACTGG 1 cut(s) 605
BssECI CCNNGG 2 cut(s) 98, 297
BssMI GATC 2 cut(s) 289, 451
BssT1I CCWWGG 2 cut(s) 98, 297
Bst4CI ACNGT 1 cut(s) 374
Bst6I CTCTTC 1 cut(s) 204
BstC8I GCNNGC 1 cut(s) 272
BstDEI CTNAG 1 cut(s) 165
BstDSI CCRYGG 1 cut(s) 98
BstF5I GGATG 1 cut(s) 160
BstKTI GATC 2 cut(s) 292, 454
BstMAI GTCTC 1 cut(s) 497
BstMBI GATC 2 cut(s) 289, 451
BstNSI RCATGY 1 cut(s) 274
BstV1I GCAGC 1 cut(s) 445
BstXI CCANNNNNNTGG 1 cut(s) 105
Bsu36I CCTNAGG 1 cut(s) 165
BtgI CCRYGG 1 cut(s) 98
BtsCI GGATG 1 cut(s) 160
Cac8I GCNNGC 1 cut(s) 272
CviAII CATG 8 cut(s) 94, 99, 185, 262, 267, 271, 385, 432
CviJI RGCY 6 cut(s) 37, 133, 194, 236, 426, 458
CviKI_1 RGCY 6 cut(s) 37, 133, 194, 236, 426, 458
DdeI CTNAG 1 cut(s) 165
DpnI GATC 2 cut(s) 291, 453
DpnII GATC 2 cut(s) 289, 451
Eam1104I CTCTTC 1 cut(s) 204
EarI CTCTTC 1 cut(s) 204
Eco130I CCWWGG 2 cut(s) 98, 297
Eco32I GATATC 1 cut(s) 258
Eco81I CCTNAGG 1 cut(s) 165
Eco88I CYCGRG 1 cut(s) 475
EcoRV GATATC 1 cut(s) 258
EcoT14I CCWWGG 2 cut(s) 98, 297
EcoT22I ATGCAT 1 cut(s) 272
ErhI CCWWGG 2 cut(s) 98, 297
FaeI CATG 8 cut(s) 97, 102, 188, 265, 270, 274, 388, 435
FatI CATG 8 cut(s) 93, 98, 184, 261, 266, 270, 384, 431
FblI GTMKAC 1 cut(s) 369
Fnu4HI GCNGC 1 cut(s) 459
FokI GGATG 1 cut(s) 147
Fsp4HI GCNGC 1 cut(s) 459
GluI GCNGC 1 cut(s) 459
Hin1II CATG 8 cut(s) 97, 102, 188, 265, 270, 274, 388, 435
HinfI GANTC 4 cut(s) 110, 239, 381, 543
HphI GGTGA 1 cut(s) 400
Hpy166II GTNNAC 2 cut(s) 331, 370
Hpy188III TCNNGA 8 cut(s) 7, 151, 164, 287, 347, 406, 547, 574
Hpy8I GTNNAC 2 cut(s) 331, 370
HpyCH4III ACNGT 1 cut(s) 374
HpyCH4V TGCA 3 cut(s) 71, 270, 461
HpyF3I CTNAG 1 cut(s) 165
Hsp92II CATG 8 cut(s) 97, 102, 188, 265, 270, 274, 388, 435
Kzo9I GATC 2 cut(s) 289, 451
LpnPI CCDG 4 cut(s) 63, 147, 177, 586
Lsp1109I GCAGC 1 cut(s) 445
LweI GCATC 3 cut(s) 32, 340, 571
MalI GATC 2 cut(s) 291, 453
MboI GATC 2 cut(s) 289, 451
MboII GAAGA 5 cut(s) 200, 214, 221, 557, 589
MluCI AATT 6 cut(s) 120, 277, 400, 530, 583, 630
MlyI GAGTC 1 cut(s) 119
MnlI CCTC 5 cut(s) 52, 160, 462, 471, 493
Mph1103I ATGCAT 1 cut(s) 272
MseI TTAA 7 cut(s) 33, 123, 222, 399, 618, 629, 640
MslI CAYNNNNRTG 1 cut(s) 103
NcoI CCATGG 1 cut(s) 98
NdeII GATC 2 cut(s) 289, 451
NlaIII CATG 8 cut(s) 97, 102, 188, 265, 270, 274, 388, 435
NsiI ATGCAT 1 cut(s) 272
NspI RCATGY 1 cut(s) 274
PaeI GCATGC 1 cut(s) 274
PaeR7I CTCGAG 1 cut(s) 475
PfeI GAWTC 3 cut(s) 239, 381, 543
PkrI GCNGC 1 cut(s) 460
PleI GAGTC 1 cut(s) 118
PpsI GAGTC 1 cut(s) 118
PsiI TTATAA 1 cut(s) 635
PspXI VCTCGAGB 1 cut(s) 475
RseI CAYNNNNRTG 1 cut(s) 103
SaqAI TTAA 7 cut(s) 33, 123, 222, 399, 618, 629, 640
SatI GCNGC 1 cut(s) 459
Sau3AI GATC 2 cut(s) 289, 451
SchI GAGTC 1 cut(s) 119
SetI ASST 9 cut(s) 39, 52, 63, 83, 171, 238, 397, 460, 482
SfaNI GCATC 3 cut(s) 32, 340, 571
Sfr274I CTCGAG 1 cut(s) 475
SlaI CTCGAG 1 cut(s) 475
SmiMI CAYNNNNRTG 1 cut(s) 103
SmlI CTYRAG 1 cut(s) 475
SmoI CTYRAG 1 cut(s) 475
SphI GCATGC 1 cut(s) 274
Sse9I AATT 6 cut(s) 120, 277, 400, 530, 583, 630
SspI AATATT 2 cut(s) 412, 592
StyI CCWWGG 2 cut(s) 98, 297
TaaI ACNGT 1 cut(s) 374
TaqI TCGA 7 cut(s) 6, 26, 405, 454, 476, 482, 548
TasI AATT 6 cut(s) 120, 277, 400, 530, 583, 630
TfiI GAWTC 3 cut(s) 239, 381, 543
Tru1I TTAA 7 cut(s) 33, 123, 222, 399, 618, 629, 640
Tru9I TTAA 7 cut(s) 33, 123, 222, 399, 618, 629, 640
TseI GCWGC 1 cut(s) 458
TspDTI ATGAA 5 cut(s) 82, 201, 231, 235, 373
XceI RCATGY 1 cut(s) 274
XhoI CTCGAG 1 cut(s) 475
XmiI GTMKAC 1 cut(s) 369
Zsp2I ATGCAT 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.