Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001259

Physical Location & Seq

Genomic Coordinates Reverse (-)

52017687 .. 52021511

Gene Structure 3825 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20481

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGATTCCCGATTTCCCGATTTCAGATTTTGATCTTATGGGTTCATATTGTTTTTCTCATCAGAGGCAAGGAAAAGAGCGTGTTCGAACATGGAGGAAGATGAAAGGTCTTCTTAACGAAAAATTTTTGCCTAGAGATTTTTCGATCAAGAATTACCCTCCCAAGGTTTTTGAGAAGAAGTTAAAGTCCAAAGAATTTTCTTTGCCCGTTGAGATTAATAGTTTATCTGAAGAAAATCCAGAAAATTTTATGATGGAAGAAACTCCACAAGAAATCATCCATGATGATCAAGAAGATATTAAAGATGAAATTGCTCATGAAGACATGGTTATTTGTAATGGTGAAGTCTTGGATCCTGAAATAAATCATTCAGAACCTGATGTCATTCAAGAATGTAACCTTGAGCGCCAAGAAGAATCTACTACGGTTGCCTATGAAAGCCAAAATGCATATGACAGACTCATCTATGGTGTTGGGTTCATGATTGTGCCATCAGAATATGCAGAAGATCCGACCAATAATCTACAGGTTCAATTGTCTAATTTTTTCTTAGGTCTTTTGTCTACCTCTTCTTGTCCTTTATTTAAGAGGAACTCGAGGGCGAGTTCTTTCATAGTGGAGAAGAATGATGTAGGACGAGAATGGACCCAGTTTAGCCGAAAAACCATAAAAGTAAAGAATCGGCGTAGAATCAAGAAAAGTGATTGGAAAATAAGTAACTCACGCGTAATCAGGTTACTAGCCGCTGGAATATTCAAGAAGATTTGGTTTTGGACTTTTTGGGTTTCTCGTGCTAAAAGTCAGGTTTTGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_18

Protein Analysis

271

Amino Acids

31.83

Weight (kDa)

6.18

Isoelectric Point (pI)

39.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001259)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13320
fragaria_vesca	FvH4_5g25692
rosa_chinensis	RchiOBHm_Chr2g0137451 RchiOBHm_Chr2g0160931 RchiOBHm_Chr3g0448801 RchiOBHm_Chr3g0478501 RchiOBHm_Chr4g0401031 RchiOBHm_Chr4g0434691 RchiOBHm_Chr5g0023581 RchiOBHm_Chr5g0058431 RchiOBHm_Chr6g0250181 RchiOBHm_Chr6g0290461 RchiOBHm_Chr6g0300101 RchiOBHm_Chr6g0310791 RchiOBHm_Chr7g0197901 RchiOBHm_Chr7g0228641
rosa_multiflora	Rmu_co8205962.1_g000001 Rmu_sc0000423.1_g000017 Rmu_sc0000639.1_g000014 Rmu_sc0000753.1_g000043 Rmu_sc0001023.1_g000036 Rmu_sc0001492.1_g000004 Rmu_sc0002038.1_g000025 Rmu_sc0002761.1_g000007 Rmu_sc0002986.1_g000050 Rmu_sc0003383.1_g000016 Rmu_sc0003627.1_g000009 Rmu_sc0004345.1_g000005 Rmu_sc0006770.1_g000009 Rmu_sc0008421.1_g000002 Rmu_sc0020916.1_g000001 Rmu_sc0026853.1_g000001 Rmu_ssc0000225.1_g000001 Rmu_ssc0000446.1_g000021
rosa_roxburghii	Rroxscaffold_1G00014750 Rroxscaffold_1G00022410 Rroxscaffold_2G00095780 Rroxscaffold_2G00135550 Rroxscaffold_4G00325760 Rroxscaffold_4G00331060 Rroxscaffold_6G00402470 Rroxscaffold_6G00427850
rosa_samantha	Rh1DG013300 Rh2AG039600 Rh2AG319100 Rh2AG482400 Rh2AG563800 Rh3CG037400 Rh4DG115600 Rh5DG036700 Rh5DG232400 Rh5DG570600 Rh6CG188400 Rh7DG052000 Rh7DG402600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	563
AccII	CGCG	1 cut(s)	726
AciI	CCGC	1 cut(s)	744
AclWI	GGATC	3 cut(s)	347, 360, 503
AcsI	RAATTY	3 cut(s)	122, 194, 244
AcuI	CTGAAG	1 cut(s)	249
AfiI	CCNNNNNNNGG	1 cut(s)	163
AflIII	ACRYGT	1 cut(s)	724
AgsI	TTSAA	3 cut(s)	389, 533, 757
AlwI	GGATC	3 cut(s)	347, 360, 503
AlwNI	CAGNNNCTG	1 cut(s)	377
Ama87I	CYCGRG	1 cut(s)	595
ApoI	RAATTY	3 cut(s)	122, 194, 244
AseI	ATTAAT	1 cut(s)	216
AspLEI	GCGC	1 cut(s)	408
AspS9I	GGNCC	1 cut(s)	645
AsuHPI	GGTGA	1 cut(s)	353
AsuII	TTCGAA	1 cut(s)	85
AvaI	CYCGRG	1 cut(s)	595
AvaII	GGWCC	1 cut(s)	645
BamHI	GGATCC	1 cut(s)	352
BauI	CACGAG	1 cut(s)	789
BbsI	GAAGAC	2 cut(s)	101, 327
BccI	CCATC	2 cut(s)	247, 499
BclI	TGATCA	1 cut(s)	286
BfaI	CTAG	2 cut(s)	132, 740
BfmI	CTRYAG	1 cut(s)	524
BfoI	RGCGCY	1 cut(s)	409
BisI	GCNGC	1 cut(s)	744
BlsI	GCNGC	1 cut(s)	745
Bme18I	GGWCC	1 cut(s)	645
BmeT110I	CYCGRG	1 cut(s)	595
BmgT120I	GGNCC	1 cut(s)	645
BmiI	GGNNCC	2 cut(s)	354, 647
BmrI	ACTGGG	1 cut(s)	643
BmuI	ACTGGG	1 cut(s)	643
BpiI	GAAGAC	2 cut(s)	101, 327
Bpu14I	TTCGAA	1 cut(s)	85
BpuEI	CTTGAG	1 cut(s)	422
BsaBI	GATNNNNATC	1 cut(s)	30
BsaJI	CCNNGG	1 cut(s)	162
Bsc4I	CCNNNNNNNGG	1 cut(s)	163
Bse1I	ACTGG	1 cut(s)	649
Bse8I	GATNNNNATC	1 cut(s)	30
BseDI	CCNNGG	1 cut(s)	162
BseGI	GGATG	1 cut(s)	276
BseJI	GATNNNNATC	1 cut(s)	30
BseLI	CCNNNNNNNGG	1 cut(s)	163
BseNI	ACTGG	1 cut(s)	649
Bsh1236I	CGCG	1 cut(s)	726
BsiHKCI	CYCGRG	1 cut(s)	595
BslI	CCNNNNNNNGG	1 cut(s)	163
BsoBI	CYCGRG	1 cut(s)	595
Bsp119I	TTCGAA	1 cut(s)	85
Bsp143I	GATC	5 cut(s)	31, 144, 286, 352, 508
BspACI	CCGC	1 cut(s)	744
BspFNI	CGCG	1 cut(s)	726
BspHI	TCATGA	2 cut(s)	316, 480
BspLI	GGNNCC	2 cut(s)	354, 647
BspPI	GGATC	3 cut(s)	347, 360, 503
BspT104I	TTCGAA	1 cut(s)	85
BsrI	ACTGG	1 cut(s)	649
BssECI	CCNNGG	1 cut(s)	162
BssMI	GATC	5 cut(s)	31, 144, 286, 352, 508
BssSI	CACGAG	1 cut(s)	789
BssT1I	CCWWGG	1 cut(s)	162
Bst2BI	CACGAG	1 cut(s)	789
Bst4CI	ACNGT	1 cut(s)	427
Bst6I	CTCTTC	1 cut(s)	574
BstBI	TTCGAA	1 cut(s)	85
BstDEI	CTNAG	1 cut(s)	550
BstF5I	GGATG	1 cut(s)	276
BstFNI	CGCG	1 cut(s)	726
BstH2I	RGCGCY	1 cut(s)	409
BstHHI	GCGC	1 cut(s)	408
BstKTI	GATC	5 cut(s)	34, 147, 289, 355, 511
BstMBI	GATC	5 cut(s)	31, 144, 286, 352, 508
BstSFI	CTRYAG	1 cut(s)	524
BstUI	CGCG	1 cut(s)	726
BstV2I	GAAGAC	2 cut(s)	101, 327
BstX2I	RGATCY	2 cut(s)	352, 508
BstYI	RGATCY	2 cut(s)	352, 508
BtsCI	GGATG	1 cut(s)	276
CaiI	CAGNNNCTG	1 cut(s)	377
CciI	TCATGA	2 cut(s)	316, 480
CfoI	GCGC	1 cut(s)	408
Cfr13I	GGNCC	1 cut(s)	645
CviAII	CATG	5 cut(s)	90, 281, 317, 325, 481
CviJI	RGCY	3 cut(s)	441, 657, 743
CviKI_1	RGCY	3 cut(s)	441, 657, 743
DdeI	CTNAG	1 cut(s)	550
DpnI	GATC	5 cut(s)	33, 146, 288, 354, 510
DpnII	GATC	5 cut(s)	31, 144, 286, 352, 508
Eam1104I	CTCTTC	1 cut(s)	574
EarI	CTCTTC	1 cut(s)	574
Eco130I	CCWWGG	1 cut(s)	162
Eco47I	GGWCC	1 cut(s)	645
Eco57I	CTGAAG	1 cut(s)	249
Eco88I	CYCGRG	1 cut(s)	595
EcoT14I	CCWWGG	1 cut(s)	162
EcoT22I	ATGCAT	1 cut(s)	451
ErhI	CCWWGG	1 cut(s)	162
FaeI	CATG	5 cut(s)	93, 284, 320, 328, 484
FalI	AAGNNNNNCTT	2 cut(s)	96, 128
FatI	CATG	5 cut(s)	89, 280, 316, 324, 480
FauNDI	CATATG	1 cut(s)	451
FbaI	TGATCA	1 cut(s)	286
FblI	GTMKAC	1 cut(s)	563
Fnu4HI	GCNGC	1 cut(s)	744
FokI	GGATG	1 cut(s)	263
Fsp4HI	GCNGC	1 cut(s)	744
FspBI	CTAG	2 cut(s)	132, 740
GlaI	GCGC	1 cut(s)	407
GluI	GCNGC	1 cut(s)	744
HaeII	RGCGCY	1 cut(s)	409
HhaI	GCGC	1 cut(s)	408
Hin1II	CATG	5 cut(s)	93, 284, 320, 328, 484
Hin6I	GCGC	1 cut(s)	406
HinP1I	GCGC	1 cut(s)	406
HinfI	GANTC	5 cut(s)	4, 416, 459, 679, 690
HphI	GGTGA	1 cut(s)	353
Hpy166II	GTNNAC	1 cut(s)	564
Hpy188I	TCNGA	6 cut(s)	25, 63, 229, 373, 496, 513
Hpy8I	GTNNAC	1 cut(s)	564
HpyCH4III	ACNGT	1 cut(s)	427
HpyCH4V	TGCA	2 cut(s)	449, 503
HpyF3I	CTNAG	1 cut(s)	550
Hsp92II	CATG	5 cut(s)	93, 284, 320, 328, 484
HspAI	GCGC	1 cut(s)	406
Ksp22I	TGATCA	1 cut(s)	286
Kzo9I	GATC	5 cut(s)	31, 144, 286, 352, 508
LpnPI	CCDG	8 cut(s)	252, 369, 390, 512, 662, 718, 732, 788
MaeI	CTAG	2 cut(s)	132, 740
MaeIII	GTNAC	3 cut(s)	395, 716, 735
MalI	GATC	5 cut(s)	33, 146, 288, 354, 510
MboI	GATC	5 cut(s)	31, 144, 286, 352, 508
MfeI	CAATTG	1 cut(s)	533
MflI	RGATCY	2 cut(s)	352, 508
MluCI	AATT	7 cut(s)	122, 151, 194, 244, 309, 533, 541
MluI	ACGCGT	1 cut(s)	724
MlyI	GAGTC	1 cut(s)	453
MmeI	TCCRAC	1 cut(s)	536
MnlI	CCTC	6 cut(s)	57, 87, 168, 577, 582, 591
Mph1103I	ATGCAT	1 cut(s)	451
MseI	TTAA	6 cut(s)	114, 182, 216, 300, 585, 814
MslI	CAYNNNNRTG	1 cut(s)	485
MspA1I	CMGCKG	1 cut(s)	746
MunI	CAATTG	1 cut(s)	533
MvnI	CGCG	1 cut(s)	726
NdeI	CATATG	1 cut(s)	451
NdeII	GATC	5 cut(s)	31, 144, 286, 352, 508
NlaIII	CATG	5 cut(s)	93, 284, 320, 328, 484
NlaIV	GGNNCC	2 cut(s)	354, 647
NsiI	ATGCAT	1 cut(s)	451
NspV	TTCGAA	1 cut(s)	85
PaeR7I	CTCGAG	1 cut(s)	595
PagI	TCATGA	2 cut(s)	316, 480
PfeI	GAWTC	4 cut(s)	4, 416, 679, 690
PkrI	GCNGC	1 cut(s)	745
PleI	GAGTC	1 cut(s)	453
PpsI	GAGTC	1 cut(s)	453
PshBI	ATTAAT	1 cut(s)	216
PspN4I	GGNNCC	2 cut(s)	354, 647
PspPI	GGNCC	1 cut(s)	645
PspXI	VCTCGAGB	1 cut(s)	595
PstNI	CAGNNNCTG	1 cut(s)	377
PsuI	RGATCY	2 cut(s)	352, 508
RseI	CAYNNNNRTG	1 cut(s)	485
SaqAI	TTAA	6 cut(s)	114, 182, 216, 300, 585, 814
SatI	GCNGC	1 cut(s)	744
Sau3AI	GATC	5 cut(s)	31, 144, 286, 352, 508
Sau96I	GGNCC	1 cut(s)	645
SchI	GAGTC	1 cut(s)	453
SetI	ASST	9 cut(s)	109, 168, 379, 402, 531, 556, 569, 737, 807
SfcI	CTRYAG	1 cut(s)	524
Sfr274I	CTCGAG	1 cut(s)	595
SfuI	TTCGAA	1 cut(s)	85
SinI	GGWCC	1 cut(s)	645
SlaI	CTCGAG	1 cut(s)	595
SmiMI	CAYNNNNRTG	1 cut(s)	485
SmlI	CTYRAG	2 cut(s)	401, 595
SmoI	CTYRAG	2 cut(s)	401, 595
Sse9I	AATT	7 cut(s)	122, 151, 194, 244, 309, 533, 541
SsiI	CCGC	1 cut(s)	744
SspI	AATATT	1 cut(s)	753
SspMI	CTAG	2 cut(s)	132, 740
StyI	CCWWGG	1 cut(s)	162
TaaI	ACNGT	1 cut(s)	427
TaqI	TCGA	3 cut(s)	85, 143, 596
TasI	AATT	7 cut(s)	122, 151, 194, 244, 309, 533, 541
TauI	GCSGC	1 cut(s)	746
TfiI	GAWTC	4 cut(s)	4, 416, 679, 690
Tru1I	TTAA	6 cut(s)	114, 182, 216, 300, 585, 814
Tru9I	TTAA	6 cut(s)	114, 182, 216, 300, 585, 814
TspDTI	ATGAA	7 cut(s)	33, 116, 321, 333, 450, 469, 601
VpaK11BI	GGWCC	1 cut(s)	645
VspI	ATTAAT	1 cut(s)	216
XapI	RAATTY	3 cut(s)	122, 194, 244
XhoI	CTCGAG	1 cut(s)	595
XmiI	GTMKAC	1 cut(s)	563
XspI	CTAG	2 cut(s)	132, 740
Zsp2I	ATGCAT	1 cut(s)	451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.