Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001259

Physical Location & Seq

Genomic Coordinates Reverse (-)

68043663 .. 68045817

Gene Structure 2155 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ27946

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

ATGATGGAATTAATCATAAATTACTCTTTTGGATATATCGGGATTCTCGAGCAAATCTTGACTGAGATTCCAAACCTCATCTCATATGGCTTTCGACGCTTGACGGAGTCTCTTACTATCGTGTTCACGCTTCCCGCATCATTTGGTATCAGAGCGGGTATCGCCCGCTCCTTAGCAGACGACGGTCCAAGGGAGAAGTTCACTACCACCAACCTCAACGACGCTGGTCGTAGAGTATCTATCAAAGAAAGTTTCGTTGAAGAGGGACATGCCAAGGGATTCGCCCTAGGACAACCTCATCAATCCACAAAAAAAAAAAGAGAAAAAAAAGAAAAAAGAAGAAGAAACATGGAACATTGGATATTCACAACGCCGGATTACAACGACTTCCGAACTACATGTGTCATCAAAGACAAGGTATGCTCTGTAATAATTGACAGTGGTCTACGAGAGAACTTTGTAGCAAATAAAGTTGTGGATTATTTTCAGTTACCGACAGTGAAGCTGAGTGATCTATACTGGATTCCATTTGGAGAGGATGAATATGCACAAGTAACAGAGGTTTGTAAAGTTCCTGTCTCTATGGGAAAATTTTATAAAGAAGAGATTACTTGTCATGTGATTGACATGGACGACACTGATGTGCTTTTTGGAAGACCATGGCATGAAAGCGTCAAAGGTGGTTATTGCAGAGACAACACATATTTATTTAGGTGGGAGTCGCACAAAATTAAAATCAAGCCTAGAAGGAATAACGTCAAGAATGACCATCCTGAGGTGTGTGAAAAGGAACATGAAGAAGCAACTTTGAAGATTGAAGAGAAACTCATTAAGGATAAGGAAGTTGATTCATTCATCACATCGATATCCATGTCATGCATGTCTAATTTTGTTCAAGATCAACCCAAGGAGAAGTCATTGCCCATTCCTTTTCAAGTGGAGGAGTTCAAGTTTCAAGATGCTTATTCTAAACTTGTCTACGGTATTGGATTCATGTTTCTCTATCTTTCTTACGGCTGTGCCCGTAATTGCTGGTGGATTCTAGCTCATCTCATATGGCTTTCGACGCTTGACGGAGTCTCTTACTATCGTGTTCACGCTTCCCGCATCAGAAACCATGGTATTTCAGCTGCTTTTGTCGAAACCCAGTACAAGAAACTTTTTCTTGCGACTTATTGTTCAAAATATGCCGTAGTTGAGCCAACATTTAAATCTCATGGTTTTGCCTTTGTCTTCCGAAAAGGCTCGTTTAATCTCACGCGTGATGTTTCAAGTGCAAATGTGCAATCACTAGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 Retrotrans_gag zf-CCHC

Protein Analysis

432

Amino Acids

49.99

Weight (kDa)

8.5

Isoelectric Point (pI)

38.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001259)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13320
fragaria_vesca	FvH4_5g25692
rosa_chinensis	RchiOBHm_Chr2g0137451 RchiOBHm_Chr2g0160931 RchiOBHm_Chr3g0448801 RchiOBHm_Chr3g0478501 RchiOBHm_Chr4g0401031 RchiOBHm_Chr4g0434691 RchiOBHm_Chr5g0023581 RchiOBHm_Chr5g0058431 RchiOBHm_Chr6g0250181 RchiOBHm_Chr6g0290461 RchiOBHm_Chr6g0300101 RchiOBHm_Chr6g0310791 RchiOBHm_Chr7g0197901 RchiOBHm_Chr7g0228641
rosa_multiflora	Rmu_co8205962.1_g000001 Rmu_sc0000423.1_g000017 Rmu_sc0000639.1_g000014 Rmu_sc0000753.1_g000043 Rmu_sc0001023.1_g000036 Rmu_sc0001492.1_g000004 Rmu_sc0002038.1_g000025 Rmu_sc0002761.1_g000007 Rmu_sc0002986.1_g000050 Rmu_sc0003383.1_g000016 Rmu_sc0003627.1_g000009 Rmu_sc0004345.1_g000005 Rmu_sc0006770.1_g000009 Rmu_sc0008421.1_g000002 Rmu_sc0020916.1_g000001 Rmu_sc0026853.1_g000001 Rmu_ssc0000225.1_g000001 Rmu_ssc0000446.1_g000021
rosa_roxburghii	Rroxscaffold_1G00014750 Rroxscaffold_1G00022410 Rroxscaffold_2G00095780 Rroxscaffold_2G00135550 Rroxscaffold_4G00325760 Rroxscaffold_4G00331060 Rroxscaffold_6G00402470 Rroxscaffold_6G00427850
rosa_samantha	Rh1DG013300 Rh2AG039600 Rh2AG319100 Rh2AG482400 Rh2AG563800 Rh3CG037400 Rh4DG115600 Rh5DG036700 Rh5DG232400 Rh5DG570600 Rh6CG188400 Rh7DG052000 Rh7DG402600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	597
AccBSI	CCGCTC	2 cut(s)	155, 168
AccI	GTMKAC	2 cut(s)	445, 978
AccII	CGCG	1 cut(s)	1261
AciI	CCGC	4 cut(s)	135, 155, 166, 1105
AcsI	RAATTY	1 cut(s)	590
AfaI	GTAC	1 cut(s)	1151
AfiI	CCNNNNNNNGG	1 cut(s)	775
AflIII	ACRYGT	2 cut(s)	398, 1259
AgsI	TTSAA	9 cut(s)	260, 811, 818, 896, 935, 949, 956, 1182, 1272
AleI	CACNNNNGTG	1 cut(s)	641
AluBI	AGCT	3 cut(s)	505, 1046, 1130
AluI	AGCT	3 cut(s)	505, 1046, 1130
Alw26I	GTCTC	4 cut(s)	114, 583, 687, 1084
Ama87I	CYCGRG	1 cut(s)	47
ApeKI	GCWGC	1 cut(s)	1130
ApoI	RAATTY	1 cut(s)	590
AseI	ATTAAT	1 cut(s)	11
AspA2I	CCTAGG	1 cut(s)	286
AspS9I	GGNCC	1 cut(s)	185
AvaI	CYCGRG	1 cut(s)	47
AvaII	GGWCC	1 cut(s)	185
AvrII	CCTAGG	1 cut(s)	286
AxyI	CCTNAGG	1 cut(s)	774
BaeGI	GKGCMC	1 cut(s)	1024
BbsI	GAAGAC	2 cut(s)	661, 1225
BbvI	GCAGC	1 cut(s)	1117
BccI	CCATC	1 cut(s)	777
BceAI	ACGGC	2 cut(s)	1030, 1175
BcoDI	GTCTC	4 cut(s)	114, 583, 687, 1084
BfaI	CTAG	4 cut(s)	287, 744, 1043, 1292
BisI	GCNGC	1 cut(s)	1131
BlnI	CCTAGG	1 cut(s)	286
BlsI	GCNGC	1 cut(s)	1132
Bme18I	GGWCC	1 cut(s)	185
BmeT110I	CYCGRG	1 cut(s)	47
BmgT120I	GGNCC	1 cut(s)	185
BmrI	ACTGGG	1 cut(s)	1141
BmsI	GCATC	3 cut(s)	146, 949, 1116
BmuI	ACTGGG	1 cut(s)	1141
BoxI	GACNNNNGTC	3 cut(s)	183, 225, 441
BpiI	GAAGAC	2 cut(s)	661, 1225
Bpu10I	CCTNAGC	1 cut(s)	172
Bsa29I	ATCGAT	1 cut(s)	863
BsaJI	CCNNGG	6 cut(s)	188, 273, 286, 659, 906, 1117
BsaXI	ACNNNNNCTCC	2 cut(s)	935, 965
Bsc4I	CCNNNNNNNGG	1 cut(s)	775
Bse1I	ACTGG	2 cut(s)	524, 1147
Bse21I	CCTNAGG	1 cut(s)	774
Bse3DI	GCAATG	1 cut(s)	917
BseCI	ATCGAT	1 cut(s)	863
BseDI	CCNNGG	6 cut(s)	188, 273, 286, 659, 906, 1117
BseGI	GGATG	2 cut(s)	544, 769
BseLI	CCNNNNNNNGG	1 cut(s)	775
BseMI	GCAATG	1 cut(s)	917
BseMII	CTCAG	3 cut(s)	54, 497, 765
BseNI	ACTGG	2 cut(s)	524, 1147
BseRI	GAGGAG	1 cut(s)	956
BseSI	GKGCMC	1 cut(s)	1024
BseXI	GCAGC	1 cut(s)	1117
Bsh1236I	CGCG	1 cut(s)	1261
BshVI	ATCGAT	1 cut(s)	863
BsiHKCI	CYCGRG	1 cut(s)	47
BsiSI	CCGG	1 cut(s)	374
BslFI	GGGAC	1 cut(s)	279
BslI	CCNNNNNNNGG	1 cut(s)	775
BsmAI	GTCTC	4 cut(s)	114, 583, 687, 1084
BsmFI	GGGAC	1 cut(s)	279
BsoBI	CYCGRG	1 cut(s)	47
Bsp1286I	GDGCHC	1 cut(s)	1024
Bsp143I	GATC	2 cut(s)	511, 898
Bsp19I	CCATGG	2 cut(s)	659, 1117
BspACI	CCGC	4 cut(s)	135, 155, 166, 1105
BspCNI	CTCAG	3 cut(s)	55, 498, 766
BspDI	ATCGAT	1 cut(s)	863
BspFNI	CGCG	1 cut(s)	1261
BsrBI	CCGCTC	2 cut(s)	155, 168
BsrDI	GCAATG	1 cut(s)	917
BsrI	ACTGG	2 cut(s)	524, 1147
BssECI	CCNNGG	6 cut(s)	188, 273, 286, 659, 906, 1117
BssMI	GATC	2 cut(s)	511, 898
BssT1I	CCWWGG	6 cut(s)	188, 273, 286, 659, 906, 1117
Bst4CI	ACNGT	4 cut(s)	185, 440, 499, 983
Bst6I	CTCTTC	3 cut(s)	255, 597, 813
BstC8I	GCNNGC	1 cut(s)	166
BstDEI	CTNAG	4 cut(s)	63, 172, 506, 774
BstDSI	CCRYGG	2 cut(s)	659, 1117
BstF5I	GGATG	2 cut(s)	544, 769
BstFNI	CGCG	1 cut(s)	1261
BstKTI	GATC	2 cut(s)	514, 901
BstMAI	GTCTC	4 cut(s)	114, 583, 687, 1084
BstMBI	GATC	2 cut(s)	511, 898
BstMWI	GCNNNNNNNGC	3 cut(s)	96, 161, 1066
BstNSI	RCATGY	3 cut(s)	272, 402, 883
BstPAI	GACNNNNGTC	3 cut(s)	183, 225, 441
BstSLI	GKGCMC	1 cut(s)	1024
BstUI	CGCG	1 cut(s)	1261
BstV1I	GCAGC	1 cut(s)	1117
BstV2I	GAAGAC	2 cut(s)	661, 1225
Bsu15I	ATCGAT	1 cut(s)	863
Bsu36I	CCTNAGG	1 cut(s)	774
BsuTUI	ATCGAT	1 cut(s)	863
BtgI	CCRYGG	2 cut(s)	659, 1117
BtsCI	GGATG	2 cut(s)	544, 769
BtsIMutI	CAGTG	3 cut(s)	445, 504, 636
Cac8I	GCNNGC	1 cut(s)	166
Cfr13I	GGNCC	1 cut(s)	185
ClaI	ATCGAT	1 cut(s)	863
CseI	GACGC	4 cut(s)	105, 230, 661, 1075
Csp6I	GTAC	1 cut(s)	1150
CviJI	RGCY	9 cut(s)	90, 505, 742, 1017, 1046, 1060, 1130, 1201, 1245
CviKI_1	RGCY	9 cut(s)	90, 505, 742, 1017, 1046, 1060, 1130, 1201, 1245
CviQI	GTAC	1 cut(s)	1150
DdeI	CTNAG	4 cut(s)	63, 172, 506, 774
DpnI	GATC	2 cut(s)	513, 900
DpnII	GATC	2 cut(s)	511, 898
DraI	TTTAAA	1 cut(s)	1210
Eam1104I	CTCTTC	3 cut(s)	255, 597, 813
EarI	CTCTTC	3 cut(s)	255, 597, 813
Eco130I	CCWWGG	6 cut(s)	188, 273, 286, 659, 906, 1117
Eco32I	GATATC	1 cut(s)	867
Eco47I	GGWCC	1 cut(s)	185
Eco81I	CCTNAGG	1 cut(s)	774
Eco88I	CYCGRG	1 cut(s)	47
EcoRV	GATATC	1 cut(s)	867
EcoT14I	CCWWGG	6 cut(s)	188, 273, 286, 659, 906, 1117
EcoT22I	ATGCAT	1 cut(s)	881
ErhI	CCWWGG	6 cut(s)	188, 273, 286, 659, 906, 1117
FaqI	GGGAC	1 cut(s)	279
FauI	CCCGC	4 cut(s)	142, 148, 173, 1112
FauNDI	CATATG	2 cut(s)	85, 1055
FblI	GTMKAC	2 cut(s)	445, 978
Fnu4HI	GCNGC	1 cut(s)	1131
FokI	GGATG	2 cut(s)	551, 756
Fsp4HI	GCNGC	1 cut(s)	1131
FspBI	CTAG	4 cut(s)	287, 744, 1043, 1292
GluI	GCNGC	1 cut(s)	1131
HapII	CCGG	1 cut(s)	374
HgaI	GACGC	4 cut(s)	105, 230, 661, 1075
HpaII	CCGG	1 cut(s)	374
Hpy166II	GTNNAC	5 cut(s)	126, 201, 446, 979, 1096
Hpy188I	TCNGA	4 cut(s)	152, 392, 1112, 1238
Hpy188III	TCNNGA	7 cut(s)	40, 47, 58, 760, 773, 896, 956
Hpy8I	GTNNAC	5 cut(s)	126, 201, 446, 979, 1096
Hpy99I	CGWCG	4 cut(s)	99, 185, 224, 1069
HpyAV	CCTTC	1 cut(s)	741
HpyCH4III	ACNGT	4 cut(s)	185, 440, 499, 983
HpyCH4IV	ACGT	1 cut(s)	756
HpyCH4V	TGCA	5 cut(s)	548, 690, 879, 1277, 1285
HpyF10VI	GCNNNNNNNGC	3 cut(s)	96, 161, 1066
HpyF3I	CTNAG	4 cut(s)	63, 172, 506, 774
HpySE526I	ACGT	1 cut(s)	756
Kzo9I	GATC	2 cut(s)	511, 898
LmnI	GCTCC	1 cut(s)	173
LpnPI	CCDG	7 cut(s)	210, 387, 505, 588, 786, 1018, 1160
Lsp1109I	GCAGC	1 cut(s)	1117
LweI	GCATC	3 cut(s)	146, 949, 1116
MaeI	CTAG	4 cut(s)	287, 744, 1043, 1292
MaeII	ACGT	1 cut(s)	756
MaeIII	GTNAC	2 cut(s)	489, 553
MalI	GATC	2 cut(s)	513, 900
MbiI	CCGCTC	2 cut(s)	155, 168
MboI	GATC	2 cut(s)	511, 898
MboII	GAAGA	9 cut(s)	272, 351, 354, 614, 666, 809, 823, 830, 1225
MhlI	GDGCHC	1 cut(s)	1024
MluCI	AATT	7 cut(s)	8, 19, 432, 590, 729, 886, 1027
MluI	ACGCGT	1 cut(s)	1259
MlyI	GAGTC	3 cut(s)	116, 728, 1086
MnlI	CCTC	8 cut(s)	86, 224, 256, 306, 529, 553, 769, 934
Mph1103I	ATGCAT	1 cut(s)	881
MseI	TTAA	5 cut(s)	11, 732, 831, 1209, 1251
MslI	CAYNNNNRTG	1 cut(s)	641
MspA1I	CMGCKG	1 cut(s)	1130
MspI	CCGG	1 cut(s)	374
MvnI	CGCG	1 cut(s)	1261
MwoI	GCNNNNNNNGC	3 cut(s)	96, 161, 1066
NcoI	CCATGG	2 cut(s)	659, 1117
NdeI	CATATG	2 cut(s)	85, 1055
NdeII	GATC	2 cut(s)	511, 898
NsiI	ATGCAT	1 cut(s)	881
NspI	RCATGY	3 cut(s)	272, 402, 883
OliI	CACNNNNGTG	1 cut(s)	641
PaeR7I	CTCGAG	1 cut(s)	47
PciI	ACATGT	1 cut(s)	398
PcsI	WCGNNNNNNNCGW	1 cut(s)	45
PfeI	GAWTC	7 cut(s)	43, 67, 279, 523, 848, 990, 1039
PflFI	GACNNNGTC	2 cut(s)	106, 1076
PkrI	GCNGC	1 cut(s)	1132
PleI	GAGTC	3 cut(s)	115, 727, 1085
PpsI	GAGTC	3 cut(s)	115, 727, 1085
PscI	ACATGT	1 cut(s)	398
PshAI	GACNNNNGTC	3 cut(s)	183, 225, 441
PshBI	ATTAAT	1 cut(s)	11
PsiI	TTATAA	1 cut(s)	597
PspPI	GGNCC	1 cut(s)	185
PsyI	GACNNNGTC	2 cut(s)	106, 1076
PvuII	CAGCTG	1 cut(s)	1130
RsaI	GTAC	1 cut(s)	1151
RsaNI	GTAC	1 cut(s)	1150
RseI	CAYNNNNRTG	1 cut(s)	641
SaqAI	TTAA	5 cut(s)	11, 732, 831, 1209, 1251
SatI	GCNGC	1 cut(s)	1131
Sau3AI	GATC	2 cut(s)	511, 898
Sau96I	GGNCC	1 cut(s)	185
SchI	GAGTC	3 cut(s)	116, 728, 1086
SduI	GDGCHC	1 cut(s)	1024
SfaNI	GCATC	3 cut(s)	146, 949, 1116
Sfr274I	CTCGAG	1 cut(s)	47
SinI	GGWCC	1 cut(s)	185
SlaI	CTCGAG	1 cut(s)	47
SmiI	ATTTAAAT	1 cut(s)	1210
SmiMI	CAYNNNNRTG	1 cut(s)	641
SmlI	CTYRAG	1 cut(s)	47
SmoI	CTYRAG	1 cut(s)	47
Sse9I	AATT	7 cut(s)	8, 19, 432, 590, 729, 886, 1027
SsiI	CCGC	4 cut(s)	135, 155, 166, 1105
SspMI	CTAG	4 cut(s)	287, 744, 1043, 1292
StyI	CCWWGG	6 cut(s)	188, 273, 286, 659, 906, 1117
SwaI	ATTTAAAT	1 cut(s)	1210
TaaI	ACNGT	4 cut(s)	185, 440, 499, 983
TaiI	ACGT	1 cut(s)	759
TaqI	TCGA	5 cut(s)	48, 94, 863, 1064, 1140
TasI	AATT	7 cut(s)	8, 19, 432, 590, 729, 886, 1027
TatI	WGTACW	1 cut(s)	1149
TfiI	GAWTC	7 cut(s)	43, 67, 279, 523, 848, 990, 1039
Tru1I	TTAA	5 cut(s)	11, 732, 831, 1209, 1251
Tru9I	TTAA	5 cut(s)	11, 732, 831, 1209, 1251
TscAI	CASTG	3 cut(s)	445, 504, 643
TseI	GCWGC	1 cut(s)	1130
TspDTI	ATGAA	6 cut(s)	555, 681, 810, 840, 844, 982
TspGWI	ACGGA	2 cut(s)	119, 1089
TspRI	CASTG	3 cut(s)	445, 504, 643
Tth111I	GACNNNGTC	2 cut(s)	106, 1076
VpaK11BI	GGWCC	1 cut(s)	185
VspI	ATTAAT	1 cut(s)	11
XapI	RAATTY	1 cut(s)	590
XceI	RCATGY	3 cut(s)	272, 402, 883
XhoI	CTCGAG	1 cut(s)	47
XmaJI	CCTAGG	1 cut(s)	286
XmiI	GTMKAC	2 cut(s)	445, 978
XspI	CTAG	4 cut(s)	287, 744, 1043, 1292
Zsp2I	ATGCAT	1 cut(s)	881

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.