Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000639.1

Orthogroup ID

OG0001259

Physical Location & Seq

Genomic Coordinates Reverse (-)

77995 .. 82503

Gene Structure 4509 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000639.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

atgattttcgacgcagaaagcgtcaaaggtggttattgcaaagacaacacatatttatttaggtgggagtcgcacaaaattaaaatcaagcctggaatgaagaacatcaagaatgaccatcctgaggtgtgtgaaaagaaacatgaagaagccactttgaagattgaagagaaattcattaaggataaggaagatgattcattcatcacatcgatatccatgtcatgcatgcctaattgtgttcaagatcagcccaaggagaagtcattgcccattccttttcaagtggaggagttcaagtttcaagatgcttattctaaacttgtctacggtattggattcatagtgataccttttaatttcgagaatattgaagttgatggcttatcatgttttattcttagtaatgatcgagctgcattcaagaggaactcgaggtcgagatcttttcaagtggaggagactgatgtaggacgagattttagccaatttcaacaaagaatctcgaaaagaaagaagcgtcttcacatcaagaagaataatttgaatattgaaaactgctccaagttagagatggacatggtggcaaggttggtggacgagaagccgttggtgatcttcagcaagagttcgtgctgcatgagtcactcgataaagacattattgtacgactttggggcaaaccctacggtgtacgagctcgatcaaatgccgaacgggcagcagatcgaaagggcgctgctgcagctcgggtgcaggccgagtgtacctgctgtattcatagggcaacagtttatcggtggtacgaatacggtgatgagtctccatatgcagaataagcttgtgccgttgctcatgagggcaaaagctatatggatttggaacaacaggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glutaredoxin

Protein Analysis

297

Amino Acids

34.35

Weight (kDa)

8.74

Isoelectric Point (pI)

53.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001259)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13320
fragaria_vesca	FvH4_5g25692
rosa_chinensis	RchiOBHm_Chr2g0137451 RchiOBHm_Chr2g0160931 RchiOBHm_Chr3g0448801 RchiOBHm_Chr3g0478501 RchiOBHm_Chr4g0401031 RchiOBHm_Chr4g0434691 RchiOBHm_Chr5g0023581 RchiOBHm_Chr5g0058431 RchiOBHm_Chr6g0250181 RchiOBHm_Chr6g0290461 RchiOBHm_Chr6g0300101 RchiOBHm_Chr6g0310791 RchiOBHm_Chr7g0197901 RchiOBHm_Chr7g0228641
rosa_multiflora	Rmu_co8205962.1_g000001 Rmu_sc0000423.1_g000017 Rmu_sc0000639.1_g000014 Rmu_sc0000753.1_g000043 Rmu_sc0001023.1_g000036 Rmu_sc0001492.1_g000004 Rmu_sc0002038.1_g000025 Rmu_sc0002761.1_g000007 Rmu_sc0002986.1_g000050 Rmu_sc0003383.1_g000016 Rmu_sc0003627.1_g000009 Rmu_sc0004345.1_g000005 Rmu_sc0006770.1_g000009 Rmu_sc0008421.1_g000002 Rmu_sc0020916.1_g000001 Rmu_sc0026853.1_g000001 Rmu_ssc0000225.1_g000001 Rmu_ssc0000446.1_g000021
rosa_roxburghii	Rroxscaffold_1G00014750 Rroxscaffold_1G00022410 Rroxscaffold_2G00095780 Rroxscaffold_2G00135550 Rroxscaffold_4G00325760 Rroxscaffold_4G00331060 Rroxscaffold_6G00402470 Rroxscaffold_6G00427850
rosa_samantha	Rh1DG013300 Rh2AG039600 Rh2AG319100 Rh2AG482400 Rh2AG563800 Rh3CG037400 Rh4DG115600 Rh5DG036700 Rh5DG232400 Rh5DG570600 Rh6CG188400 Rh7DG052000 Rh7DG402600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	778
AccI	GTMKAC	1 cut(s)	327
AcsI	RAATTY	1 cut(s)	173
AcuI	CTGAAG	1 cut(s)	604
AfaI	GTAC	4 cut(s)	668, 695, 768, 805
AfiI	CCNNNNNNNGG	1 cut(s)	124
AjnI	CCWGG	1 cut(s)	91
AluBI	AGCT	5 cut(s)	416, 700, 748, 841, 869
AluI	AGCT	5 cut(s)	416, 700, 748, 841, 869
Alw21I	GWGCWC	1 cut(s)	702
Alw26I	GTCTC	2 cut(s)	455, 827
Ama87I	CYCGRG	2 cut(s)	433, 749
AoxI	GGCC	1 cut(s)	758
ApeKI	GCWGC	6 cut(s)	416, 636, 721, 739, 742, 745
ApoI	RAATTY	1 cut(s)	173
AspLEI	GCGC	1 cut(s)	739
AsuHPI	GGTGA	2 cut(s)	625, 826
AvaI	CYCGRG	2 cut(s)	433, 749
AxyI	CCTNAGG	1 cut(s)	123
BanII	GRGCYC	1 cut(s)	702
BbsI	GAAGAC	1 cut(s)	515
Bbv12I	GWGCWC	1 cut(s)	702
BbvI	GCAGC	6 cut(s)	403, 623, 726, 729, 733, 757
BccI	CCATC	3 cut(s)	126, 374, 568
BceAI	ACGGC	2 cut(s)	592, 832
BciT130I	CCWGG	1 cut(s)	93
BcoDI	GTCTC	2 cut(s)	455, 827
BfmI	CTRYAG	1 cut(s)	743
BfoI	RGCGCY	1 cut(s)	740
BfuAI	ACCTGC	1 cut(s)	778
BglI	GCCNNNNNGGC	1 cut(s)	718
BglII	AGATCT	1 cut(s)	443
BisI	GCNGC	6 cut(s)	417, 637, 722, 740, 743, 746
BlsI	GCNGC	6 cut(s)	418, 638, 723, 741, 744, 747
Bme1390I	CCNGG	1 cut(s)	93
BmeT110I	CYCGRG	2 cut(s)	433, 749
BmrFI	CCNGG	1 cut(s)	93
BmsI	GCATC	1 cut(s)	298
BpiI	GAAGAC	1 cut(s)	515
Bsa29I	ATCGAT	1 cut(s)	212
BsaJI	CCNNGG	1 cut(s)	255
BsaXI	ACNNNNNCTCC	2 cut(s)	284, 314
Bsc4I	CCNNNNNNNGG	1 cut(s)	124
Bse21I	CCTNAGG	1 cut(s)	123
Bse3DI	GCAATG	1 cut(s)	266
BseBI	CCWGG	1 cut(s)	93
BseCI	ATCGAT	1 cut(s)	212
BseDI	CCNNGG	1 cut(s)	255
BseGI	GGATG	1 cut(s)	118
BseLI	CCNNNNNNNGG	1 cut(s)	124
BseMI	GCAATG	1 cut(s)	266
BseMII	CTCAG	1 cut(s)	114
BseRI	GAGGAG	2 cut(s)	305, 473
BseXI	GCAGC	6 cut(s)	403, 623, 726, 729, 733, 757
BsgI	GTGCAG	1 cut(s)	775
BshFI	GGCC	1 cut(s)	760
BshVI	ATCGAT	1 cut(s)	212
BsiHKAI	GWGCWC	1 cut(s)	702
BsiHKCI	CYCGRG	2 cut(s)	433, 749
BslI	CCNNNNNNNGG	1 cut(s)	124
BsmAI	GTCTC	2 cut(s)	455, 827
BsmI	GAATGC	1 cut(s)	419
BsnI	GGCC	1 cut(s)	760
BsoBI	CYCGRG	2 cut(s)	433, 749
Bsp1286I	GDGCHC	1 cut(s)	702
Bsp143I	GATC	6 cut(s)	247, 409, 443, 615, 703, 726
BspANI	GGCC	1 cut(s)	760
BspCNI	CTCAG	1 cut(s)	115
BspDI	ATCGAT	1 cut(s)	212
BspHI	TCATGA	1 cut(s)	855
BspMAI	CTGCAG	1 cut(s)	747
BspMI	ACCTGC	1 cut(s)	778
BsrDI	GCAATG	1 cut(s)	266
BssECI	CCNNGG	1 cut(s)	255
BssMI	GATC	6 cut(s)	247, 409, 443, 615, 703, 726
BssT1I	CCWWGG	1 cut(s)	255
Bst2UI	CCWGG	1 cut(s)	93
Bst4CI	ACNGT	4 cut(s)	332, 691, 792, 814
Bst6I	CTCTTC	1 cut(s)	162
BstC8I	GCNNGC	2 cut(s)	230, 758
BstDEI	CTNAG	2 cut(s)	123, 401
BstF5I	GGATG	1 cut(s)	118
BstH2I	RGCGCY	1 cut(s)	740
BstHHI	GCGC	1 cut(s)	739
BstKTI	GATC	6 cut(s)	250, 412, 446, 618, 706, 729
BstMAI	GTCTC	2 cut(s)	455, 827
BstMBI	GATC	6 cut(s)	247, 409, 443, 615, 703, 726
BstMWI	GCNNNNNNNGC	3 cut(s)	718, 745, 838
BstNI	CCWGG	1 cut(s)	93
BstNSI	RCATGY	1 cut(s)	232
BstSCI	CCNGG	1 cut(s)	91
BstSFI	CTRYAG	1 cut(s)	743
BstV1I	GCAGC	6 cut(s)	403, 623, 726, 729, 733, 757
BstV2I	GAAGAC	1 cut(s)	515
BstX2I	RGATCY	1 cut(s)	443
BstYI	RGATCY	1 cut(s)	443
Bsu15I	ATCGAT	1 cut(s)	212
Bsu36I	CCTNAGG	1 cut(s)	123
BsuRI	GGCC	1 cut(s)	760
BsuTUI	ATCGAT	1 cut(s)	212
BtsCI	GGATG	1 cut(s)	118
BveI	ACCTGC	1 cut(s)	778
Cac8I	GCNNGC	2 cut(s)	230, 758
CciI	TCATGA	1 cut(s)	855
CfoI	GCGC	1 cut(s)	739
ClaI	ATCGAT	1 cut(s)	212
CseI	GACGC	3 cut(s)	10, 20, 509
Csp6I	GTAC	4 cut(s)	667, 694, 767, 804
CspCI	CAANNNNNGTGG	2 cut(s)	576, 611
CviAII	CATG	8 cut(s)	143, 220, 225, 229, 390, 580, 640, 856
CviQI	GTAC	4 cut(s)	667, 694, 767, 804
DdeI	CTNAG	2 cut(s)	123, 401
DpnI	GATC	6 cut(s)	249, 411, 445, 617, 705, 728
DpnII	GATC	6 cut(s)	247, 409, 443, 615, 703, 726
Eam1104I	CTCTTC	1 cut(s)	162
EarI	CTCTTC	1 cut(s)	162
Ecl136II	GAGCTC	1 cut(s)	700
Eco130I	CCWWGG	1 cut(s)	255
Eco24I	GRGCYC	1 cut(s)	702
Eco32I	GATATC	1 cut(s)	216
Eco53kI	GAGCTC	1 cut(s)	700
Eco57I	CTGAAG	1 cut(s)	604
Eco81I	CCTNAGG	1 cut(s)	123
Eco88I	CYCGRG	2 cut(s)	433, 749
EcoICRI	GAGCTC	1 cut(s)	700
EcoRII	CCWGG	1 cut(s)	91
EcoRV	GATATC	1 cut(s)	216
EcoT14I	CCWWGG	1 cut(s)	255
EcoT22I	ATGCAT	1 cut(s)	230
EcoT38I	GRGCYC	1 cut(s)	702
ErhI	CCWWGG	1 cut(s)	255
FaeI	CATG	8 cut(s)	146, 223, 228, 232, 393, 583, 643, 859
FatI	CATG	8 cut(s)	142, 219, 224, 228, 389, 579, 639, 855
FauNDI	CATATG	1 cut(s)	828
FblI	GTMKAC	1 cut(s)	327
Fnu4HI	GCNGC	6 cut(s)	417, 637, 722, 740, 743, 746
FokI	GGATG	1 cut(s)	105
FriOI	GRGCYC	1 cut(s)	702
Fsp4HI	GCNGC	6 cut(s)	417, 637, 722, 740, 743, 746
GlaI	GCGC	1 cut(s)	738
GluI	GCNGC	6 cut(s)	417, 637, 722, 740, 743, 746
HaeII	RGCGCY	1 cut(s)	740
HaeIII	GGCC	1 cut(s)	760
HgaI	GACGC	3 cut(s)	10, 20, 509
HhaI	GCGC	1 cut(s)	739
Hin1II	CATG	8 cut(s)	146, 223, 228, 232, 393, 583, 643, 859
Hin6I	GCGC	1 cut(s)	737
HinP1I	GCGC	1 cut(s)	737
HindIII	AAGCTT	1 cut(s)	839
HinfI	GANTC	6 cut(s)	68, 197, 339, 501, 643, 820
HphI	GGTGA	2 cut(s)	625, 826
Hpy166II	GTNNAC	4 cut(s)	328, 598, 694, 767
Hpy8I	GTNNAC	4 cut(s)	328, 598, 694, 767
Hpy99I	CGWCG	1 cut(s)	14
HpyCH4III	ACNGT	4 cut(s)	332, 691, 792, 814
HpyCH4V	TGCA	7 cut(s)	39, 228, 419, 639, 745, 756, 832
HpyF10VI	GCNNNNNNNGC	3 cut(s)	718, 745, 838
HpyF3I	CTNAG	2 cut(s)	123, 401
Hsp92II	CATG	8 cut(s)	146, 223, 228, 232, 393, 583, 643, 859
HspAI	GCGC	1 cut(s)	737
Kzo9I	GATC	6 cut(s)	247, 409, 443, 615, 703, 726
LmnI	GCTCC	1 cut(s)	566
LpnPI	CCDG	6 cut(s)	78, 105, 135, 742, 783, 874
Lsp1109I	GCAGC	6 cut(s)	403, 623, 726, 729, 733, 757
LweI	GCATC	1 cut(s)	298
MaeIII	GTNAC	1 cut(s)	644
MalI	GATC	6 cut(s)	249, 411, 445, 617, 705, 728
MboI	GATC	6 cut(s)	247, 409, 443, 615, 703, 726
MboII	GAAGA	8 cut(s)	112, 158, 172, 179, 203, 515, 547, 610
MflI	RGATCY	1 cut(s)	443
MhlI	GDGCHC	1 cut(s)	702
MluCI	AATT	6 cut(s)	78, 173, 235, 358, 488, 541
MlyI	GAGTC	3 cut(s)	77, 652, 829
MnlI	CCTC	6 cut(s)	118, 283, 420, 429, 451, 852
Mph1103I	ATGCAT	1 cut(s)	230
MseI	TTAA	3 cut(s)	81, 180, 357
MspR9I	CCNGG	1 cut(s)	93
Mva1269I	GAATGC	1 cut(s)	419
MvaI	CCWGG	1 cut(s)	93
MwoI	GCNNNNNNNGC	3 cut(s)	718, 745, 838
NdeI	CATATG	1 cut(s)	828
NdeII	GATC	6 cut(s)	247, 409, 443, 615, 703, 726
NlaIII	CATG	8 cut(s)	146, 223, 228, 232, 393, 583, 643, 859
NmeAIII	GCCGAG	1 cut(s)	786
NmuCI	GTSAC	1 cut(s)	644
NsiI	ATGCAT	1 cut(s)	230
NspI	RCATGY	1 cut(s)	232
PaeI	GCATGC	1 cut(s)	232
PaeR7I	CTCGAG	1 cut(s)	433
PagI	TCATGA	1 cut(s)	855
PcsI	WCGNNNNNNNCGW	1 cut(s)	18
PctI	GAATGC	1 cut(s)	419
PfeI	GAWTC	3 cut(s)	197, 339, 501
PkrI	GCNGC	6 cut(s)	418, 638, 723, 741, 744, 747
PleI	GAGTC	3 cut(s)	76, 651, 828
PpsI	GAGTC	3 cut(s)	76, 651, 828
Psp124BI	GAGCTC	1 cut(s)	702
Psp6I	CCWGG	1 cut(s)	91
PspGI	CCWGG	1 cut(s)	91
PspXI	VCTCGAGB	1 cut(s)	433
PstI	CTGCAG	1 cut(s)	747
PsuI	RGATCY	1 cut(s)	443
RsaI	GTAC	4 cut(s)	668, 695, 768, 805
RsaNI	GTAC	4 cut(s)	667, 694, 767, 804
SacI	GAGCTC	1 cut(s)	702
SaqAI	TTAA	3 cut(s)	81, 180, 357
SatI	GCNGC	6 cut(s)	417, 637, 722, 740, 743, 746
Sau3AI	GATC	6 cut(s)	247, 409, 443, 615, 703, 726
SchI	GAGTC	3 cut(s)	77, 652, 829
ScrFI	CCNGG	1 cut(s)	93
SduI	GDGCHC	1 cut(s)	702
SfaNI	GCATC	1 cut(s)	298
SfcI	CTRYAG	1 cut(s)	743
Sfr274I	CTCGAG	1 cut(s)	433
SlaI	CTCGAG	1 cut(s)	433
SmlI	CTYRAG	1 cut(s)	433
SmoI	CTYRAG	1 cut(s)	433
SphI	GCATGC	1 cut(s)	232
Sse9I	AATT	6 cut(s)	78, 173, 235, 358, 488, 541
SspI	AATATT	2 cut(s)	370, 550
SstI	GAGCTC	1 cut(s)	702
StyD4I	CCNGG	1 cut(s)	91
StyI	CCWWGG	1 cut(s)	255
TaaI	ACNGT	4 cut(s)	332, 691, 792, 814
TasI	AATT	6 cut(s)	78, 173, 235, 358, 488, 541
TfiI	GAWTC	3 cut(s)	197, 339, 501
Tru1I	TTAA	3 cut(s)	81, 180, 357
Tru9I	TTAA	3 cut(s)	81, 180, 357
TseFI	GTSAC	1 cut(s)	644
TseI	GCWGC	6 cut(s)	416, 636, 721, 739, 742, 745
Tsp45I	GTSAC	1 cut(s)	644
TspDTI	ATGAA	7 cut(s)	113, 159, 166, 189, 193, 331, 769
XapI	RAATTY	1 cut(s)	173
XceI	RCATGY	1 cut(s)	232
XcmI	CCANNNNNNNNNTGG	1 cut(s)	571
XhoI	CTCGAG	1 cut(s)	433
XmiI	GTMKAC	1 cut(s)	327
Zsp2I	ATGCAT	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.