RchiOBHm_Chr5g0058431

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0001259
Physical Location & Seq
Forward (+)
62846453 .. 62847526
1074 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33509

Sequence Viewer

Length: 633 bp
ATGGGAAAATTTTATAATGAAGAGATTACTTGTCATGTGATTGACATGGACAACGCTAATGTGCTTTTTGGAAGACCATGGCATGAAAGCGTCAAAGGTAGTTATTGCAAAAACAACACATATTTATTTAGGTGGGAGTCGAACAAAATTAAAGTCAAGCCTGGAAGGAAGAACATCAAGAATGACCATCCTAAGGTGTGTGAAAAGGAACATGAAGAAGCCACTTTGAAGATTGAAGAGAAACTCATTAAGAACAAGGAAGCTGATTCATTCTTCACATCAATATCCATGTCATGCATGCCTAATTGTGTTGAAGATCAACCCAAGGAGAAGTCAATGCCCATTCCTTTTCAAGTGGAGGAGTTCAAGTTTCAAGATGCTTATTCTAAACTTGTCTACTATATTGGATTCATGATGATACCTTTTAATTTCAAGAATATTGAAGTTGATGGCTTATCATGTTTTATTCCTACTAATGATCGAGCTGCATACAAGAGGAACGCAGGGTCGAGTTCTTTTCAAGTGGAGGAGACTGATTGGATTCTAGCTCATCTCATATGGCTTTCGACGCTTGACGGAGCCTCTTACTATCGTGTTCACGCTTCCCGCATCAGGATTTCACTGTGGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 Retrotrans_gag rve

Protein Analysis

210

Amino Acids

24.59

Weight (kDa)

7.61

Isoelectric Point (pI)

49.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 15
AccI GTMKAC 1 cut(s) 396
AciI CCGC 1 cut(s) 607
AcsI RAATTY 1 cut(s) 8
AfiI CCNNNNNNNGG 2 cut(s) 193, 612
AgsI TTSAA 9 cut(s) 229, 236, 314, 353, 367, 374, 433, 443, 521
AjnI CCWGG 1 cut(s) 160
AluBI AGCT 3 cut(s) 263, 485, 548
AluI AGCT 3 cut(s) 263, 485, 548
Alw26I GTCTC 1 cut(s) 524
ApeKI GCWGC 1 cut(s) 485
ApoI RAATTY 1 cut(s) 8
ArsI GACNNNNNNTTYG 2 cut(s) 138, 170
AxyI CCTNAGG 1 cut(s) 192
BbsI GAAGAC 1 cut(s) 79
BbvI GCAGC 1 cut(s) 472
BccI CCATC 2 cut(s) 195, 443
BciT130I CCWGG 1 cut(s) 162
BcoDI GTCTC 1 cut(s) 524
BfaI CTAG 1 cut(s) 545
BisI GCNGC 1 cut(s) 486
BlsI GCNGC 1 cut(s) 487
Bme1390I CCNGG 1 cut(s) 162
BmiI GGNNCC 1 cut(s) 580
BmrFI CCNGG 1 cut(s) 162
BmsI GCATC 2 cut(s) 367, 618
BpiI GAAGAC 1 cut(s) 79
BsaJI CCNNGG 2 cut(s) 77, 324
BsaXI ACNNNNNCTCC 2 cut(s) 353, 383
Bsc4I CCNNNNNNNGG 2 cut(s) 193, 612
Bse21I CCTNAGG 1 cut(s) 192
BseBI CCWGG 1 cut(s) 162
BseDI CCNNGG 2 cut(s) 77, 324
BseGI GGATG 1 cut(s) 187
BseLI CCNNNNNNNGG 2 cut(s) 193, 612
BseRI GAGGAG 2 cut(s) 374, 542
BseXI GCAGC 1 cut(s) 472
BslI CCNNNNNNNGG 2 cut(s) 193, 612
BsmAI GTCTC 1 cut(s) 524
Bsp143I GATC 2 cut(s) 316, 478
Bsp19I CCATGG 1 cut(s) 77
BspACI CCGC 1 cut(s) 607
BspHI TCATGA 1 cut(s) 411
BspLI GGNNCC 1 cut(s) 580
BssECI CCNNGG 2 cut(s) 77, 324
BssMI GATC 2 cut(s) 316, 478
BssT1I CCWWGG 2 cut(s) 77, 324
Bst2UI CCWGG 1 cut(s) 162
Bst4CI ACNGT 1 cut(s) 624
Bst6I CTCTTC 2 cut(s) 15, 231
BstC8I GCNNGC 1 cut(s) 299
BstDEI CTNAG 1 cut(s) 192
BstDSI CCRYGG 1 cut(s) 77
BstF5I GGATG 1 cut(s) 187
BstKTI GATC 2 cut(s) 319, 481
BstMAI GTCTC 1 cut(s) 524
BstMBI GATC 2 cut(s) 316, 478
BstMWI GCNNNNNNNGC 1 cut(s) 568
BstNI CCWGG 1 cut(s) 162
BstNSI RCATGY 1 cut(s) 301
BstSCI CCNGG 1 cut(s) 160
BstV1I GCAGC 1 cut(s) 472
BstV2I GAAGAC 1 cut(s) 79
Bsu36I CCTNAGG 1 cut(s) 192
BtgI CCRYGG 1 cut(s) 77
BtsCI GGATG 1 cut(s) 187
BtsIMutI CAGTG 1 cut(s) 620
Cac8I GCNNGC 1 cut(s) 299
CciI TCATGA 1 cut(s) 411
CseI GACGC 2 cut(s) 79, 577
CviJI RGCY 8 cut(s) 160, 221, 263, 453, 485, 548, 562, 581
CviKI_1 RGCY 8 cut(s) 160, 221, 263, 453, 485, 548, 562, 581
DdeI CTNAG 1 cut(s) 192
DpnI GATC 2 cut(s) 318, 480
DpnII GATC 2 cut(s) 316, 478
Eam1104I CTCTTC 2 cut(s) 15, 231
EarI CTCTTC 2 cut(s) 15, 231
Eco130I CCWWGG 2 cut(s) 77, 324
Eco81I CCTNAGG 1 cut(s) 192
EcoRII CCWGG 1 cut(s) 160
EcoT14I CCWWGG 2 cut(s) 77, 324
EcoT22I ATGCAT 1 cut(s) 299
ErhI CCWWGG 2 cut(s) 77, 324
FauI CCCGC 1 cut(s) 614
FauNDI CATATG 1 cut(s) 557
FblI GTMKAC 1 cut(s) 396
Fnu4HI GCNGC 1 cut(s) 486
FokI GGATG 1 cut(s) 174
Fsp4HI GCNGC 1 cut(s) 486
FspBI CTAG 1 cut(s) 545
GluI GCNGC 1 cut(s) 486
HgaI GACGC 2 cut(s) 79, 577
HinfI GANTC 4 cut(s) 137, 266, 408, 541
Hpy166II GTNNAC 2 cut(s) 397, 598
Hpy188III TCNNGA 5 cut(s) 178, 374, 412, 433, 613
Hpy8I GTNNAC 2 cut(s) 397, 598
Hpy99I CGWCG 1 cut(s) 571
HpyAV CCTTC 1 cut(s) 159
HpyCH4III ACNGT 1 cut(s) 624
HpyCH4V TGCA 3 cut(s) 108, 297, 488
HpyF10VI GCNNNNNNNGC 1 cut(s) 568
HpyF3I CTNAG 1 cut(s) 192
Kzo9I GATC 2 cut(s) 316, 478
LmnI GCTCC 1 cut(s) 578
LpnPI CCDG 4 cut(s) 147, 174, 489, 598
Lsp1109I GCAGC 1 cut(s) 472
LweI GCATC 2 cut(s) 367, 618
MaeI CTAG 1 cut(s) 545
MalI GATC 2 cut(s) 318, 480
MboI GATC 2 cut(s) 316, 478
MboII GAAGA 8 cut(s) 32, 84, 181, 227, 241, 248, 265, 326
MluCI AATT 4 cut(s) 8, 147, 304, 427
MlyI GAGTC 1 cut(s) 146
MnlI CCTC 4 cut(s) 352, 489, 520, 592
Mph1103I ATGCAT 1 cut(s) 299
MseI TTAA 3 cut(s) 150, 249, 426
MspR9I CCNGG 1 cut(s) 162
MvaI CCWGG 1 cut(s) 162
MwoI GCNNNNNNNGC 1 cut(s) 568
NcoI CCATGG 1 cut(s) 77
NdeI CATATG 1 cut(s) 557
NdeII GATC 2 cut(s) 316, 478
NlaIV GGNNCC 1 cut(s) 580
NsiI ATGCAT 1 cut(s) 299
NspI RCATGY 1 cut(s) 301
PaeI GCATGC 1 cut(s) 301
PagI TCATGA 1 cut(s) 411
PfeI GAWTC 3 cut(s) 266, 408, 541
PkrI GCNGC 1 cut(s) 487
PleI GAGTC 1 cut(s) 145
PpsI GAGTC 1 cut(s) 145
PsiI TTATAA 1 cut(s) 15
Psp6I CCWGG 1 cut(s) 160
PspGI CCWGG 1 cut(s) 160
PspN4I GGNNCC 1 cut(s) 580
SaqAI TTAA 3 cut(s) 150, 249, 426
SatI GCNGC 1 cut(s) 486
Sau3AI GATC 2 cut(s) 316, 478
SchI GAGTC 1 cut(s) 146
ScrFI CCNGG 1 cut(s) 162
SetI ASST 7 cut(s) 100, 134, 198, 265, 424, 487, 550
SfaNI GCATC 2 cut(s) 367, 618
SphI GCATGC 1 cut(s) 301
Sse9I AATT 4 cut(s) 8, 147, 304, 427
SsiI CCGC 1 cut(s) 607
SspI AATATT 1 cut(s) 439
SspMI CTAG 1 cut(s) 545
StyD4I CCNGG 1 cut(s) 160
StyI CCWWGG 2 cut(s) 77, 324
TaaI ACNGT 1 cut(s) 624
TaqI TCGA 4 cut(s) 140, 481, 509, 566
TasI AATT 4 cut(s) 8, 147, 304, 427
TfiI GAWTC 3 cut(s) 266, 408, 541
Tru1I TTAA 3 cut(s) 150, 249, 426
Tru9I TTAA 3 cut(s) 150, 249, 426
TscAI CASTG 1 cut(s) 627
TseI GCWGC 1 cut(s) 485
TspDTI ATGAA 5 cut(s) 33, 99, 228, 258, 400
TspGWI ACGGA 1 cut(s) 591
TspRI CASTG 1 cut(s) 627
XapI RAATTY 1 cut(s) 8
XceI RCATGY 1 cut(s) 301
XmiI GTMKAC 1 cut(s) 396
XspI CTAG 1 cut(s) 545
Zsp2I ATGCAT 1 cut(s) 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.