Rmu_sc0000753.1_g000043
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000753.1
OG0001259
Physical Location & Seq
Reverse (-)
199729 .. 202394
2666 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000753.1_g000043.1.cds

Sequence Viewer

Length: 1176 bp
atggacactcttagttcattgattacgaatgctcttacagcagcagcaaggaggggcagcaacagtagtagtgggcgacagcagcagcaggcaacagctgcgggcaagcagcagcgtgcccgtaaagcaggcaggacggttgaggaaggcagtcgctcgggttgttgcagggcagactgtgcacgcagagggcaggctgcagggctgcgggttgcaggagagcagacactagcgtgggctagcagatggtgcagcggggcagcaggcacgcgggtgcgcagacggggagcaacaagaacaggggcgcgtaggagctacgggggcagcgaacacagggctggggctccccatggtggtggaggtgatgttgatcatgattcccaagatctcagaaccaagattgatattccttacttttctggtcacatgagcgtggaggattttttggtttcgcaggttgaagtggatagattctttgagatcatggaggttccaaaacacaagcaggctaagacggtttctcgaaagctaaaaaaagatgttgcttattggtgggatcaattgcagagttctcgtcagaggcaaggaaaagagtgtgttcaaacatggaggaagatgaaaggtcttcttaatgaaaaatttttgcctagagatttttcgatcaagaattgccctcttaaggtttttaagaagaagttaaagtccaaagagttttctttacctgttgagattaatagtttatctgaagaaaagtcaaaagaatttctgatggaagatgctccacaagaaatcttccatcatgaccaagaagaggttaaagatgaaattgttcatgtagacatggttattaataatgaaaaagtcttggaccttgaaataaatcactcaaaaccagatatcattcaagaatgcaaccttgagagtcgagacgaatctactaaggttgcatatgagagccaaaatgcatatgacagactcatatttggcgttgggttcatgattgtgccatcaaaatttgtagaggatcaagccaataatctacaggttcaattgtctaattgtttctcaggtattttatctacctattcttgttctttattcaagaagaactcgagggcgagttctttcatagtggaggagaatgatgtaggacgagaatgggcctggtttagctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 Retrotrans_gag rve zf-H2C2

Protein Analysis

391

Amino Acids

44.08

Weight (kDa)

8.94

Isoelectric Point (pI)

47.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 278
Acc36I ACCTGC 1 cut(s) 445
AccI GTMKAC 1 cut(s) 837
AccII CGCG 2 cut(s) 271, 307
AciI CCGC 4 cut(s) 101, 208, 255, 271
AclWI GGATC 2 cut(s) 564, 1032
AcsI RAATTY 3 cut(s) 638, 761, 1013
AcuI CTGAAG 1 cut(s) 765
AfiI CCNNNNNNNGG 3 cut(s) 353, 679, 811
AflII CTTAAG 1 cut(s) 677
AgsI TTSAA 6 cut(s) 461, 602, 875, 905, 1049, 1102
AjnI CCWGG 1 cut(s) 1163
AleI CACNNNNGTG 2 cut(s) 232, 272
AluBI AGCT 4 cut(s) 98, 315, 529, 1173
AluI AGCT 4 cut(s) 98, 315, 529, 1173
Alw21I GWGCWC 1 cut(s) 184
Alw26I GTCTC 1 cut(s) 921
Alw44I GTGCAC 1 cut(s) 180
AlwI GGATC 2 cut(s) 564, 1032
Ama87I CYCGRG 2 cut(s) 157, 1111
AoxI GGCC 1 cut(s) 1161
ApaLI GTGCAC 1 cut(s) 180
ApoI RAATTY 3 cut(s) 638, 761, 1013
AseI ATTAAT 2 cut(s) 732, 849
Asp700I GAANNNNTTC 1 cut(s) 828
AspLEI GCGC 2 cut(s) 279, 307
AspS9I GGNCC 2 cut(s) 868, 1161
AsuHPI GGTGA 1 cut(s) 374
AsuNHI GCTAGC 1 cut(s) 239
AvaI CYCGRG 2 cut(s) 157, 1111
AvaII GGWCC 1 cut(s) 868
BaeGI GKGCMC 2 cut(s) 121, 184
BanII GRGCYC 1 cut(s) 346
BbsI GAAGAC 1 cut(s) 617
Bbv12I GWGCWC 1 cut(s) 184
BccI CCATC 4 cut(s) 240, 763, 804, 1015
BcgI CGANNNNNNTGC 2 cut(s) 554, 588
BciT130I CCWGG 1 cut(s) 1165
BclI TGATCA 1 cut(s) 370
BcoDI GTCTC 1 cut(s) 921
BfaI CTAG 4 cut(s) 230, 240, 648, 1174
BfmI CTRYAG 2 cut(s) 198, 1040
BfrI CTTAAG 1 cut(s) 677
BfuAI ACCTGC 1 cut(s) 445
BglII AGATCT 1 cut(s) 385
Bme1390I CCNGG 1 cut(s) 1165
Bme18I GGWCC 1 cut(s) 868
BmeT110I CYCGRG 2 cut(s) 157, 1111
BmgT120I GGNCC 2 cut(s) 868, 1161
BmiI GGNNCC 2 cut(s) 345, 492
BmrFI CCNGG 1 cut(s) 1165
BmsI GCATC 1 cut(s) 766
BmtI GCTAGC 1 cut(s) 243
BpiI GAAGAC 1 cut(s) 617
BpuEI CTTGAG 1 cut(s) 938
BsaBI GATNNNNATC 1 cut(s) 369
BsaJI CCNNGG 1 cut(s) 349
BsaXI ACNNNNNCTCC 2 cut(s) 351, 381
Bsc4I CCNNNNNNNGG 3 cut(s) 353, 679, 811
Bse8I GATNNNNATC 1 cut(s) 369
BseBI CCWGG 1 cut(s) 1165
BseDI CCNNGG 1 cut(s) 349
BseJI GATNNNNATC 1 cut(s) 369
BseLI CCNNNNNNNGG 3 cut(s) 353, 679, 811
BseMII CTCAG 2 cut(s) 403, 1080
BseRI GAGGAG 1 cut(s) 1151
BseSI GKGCMC 2 cut(s) 121, 184
BseYI CCCAGC 1 cut(s) 338
BsgI GTGCAG 1 cut(s) 271
Bsh1236I CGCG 2 cut(s) 271, 307
BshFI GGCC 1 cut(s) 1163
BsiHKAI GWGCWC 1 cut(s) 184
BsiHKCI CYCGRG 2 cut(s) 157, 1111
BslI CCNNNNNNNGG 3 cut(s) 353, 679, 811
BsmAI GTCTC 1 cut(s) 921
BsmBI CGTCTC 1 cut(s) 921
BsmI GAATGC 2 cut(s) 34, 914
BsnI GGCC 1 cut(s) 1163
BsoBI CYCGRG 2 cut(s) 157, 1111
Bsp1286I GDGCHC 3 cut(s) 121, 184, 346
Bsp143I GATC 6 cut(s) 370, 385, 480, 556, 660, 1024
Bsp19I CCATGG 1 cut(s) 349
BspACI CCGC 4 cut(s) 101, 208, 255, 271
BspANI GGCC 1 cut(s) 1163
BspCNI CTCAG 2 cut(s) 402, 1079
BspFNI CGCG 2 cut(s) 271, 307
BspHI TCATGA 3 cut(s) 373, 799, 996
BspLI GGNNCC 2 cut(s) 345, 492
BspMAI CTGCAG 1 cut(s) 202
BspMI ACCTGC 1 cut(s) 445
BspOI GCTAGC 1 cut(s) 243
BspPI GGATC 2 cut(s) 564, 1032
BspTI CTTAAG 1 cut(s) 677
BssECI CCNNGG 1 cut(s) 349
BssMI GATC 6 cut(s) 370, 385, 480, 556, 660, 1024
BssT1I CCWWGG 1 cut(s) 349
Bst2UI CCWGG 1 cut(s) 1165
Bst4CI ACNGT 4 cut(s) 65, 139, 179, 517
Bst6I CTCTTC 1 cut(s) 804
BstAFI CTTAAG 1 cut(s) 677
BstAPI GCANNNNNTGC 3 cut(s) 98, 179, 249
BstDEI CTNAG 5 cut(s) 11, 389, 510, 939, 1066
BstDSI CCRYGG 1 cut(s) 349
BstFNI CGCG 2 cut(s) 271, 307
BstHHI GCGC 2 cut(s) 279, 307
BstKTI GATC 6 cut(s) 373, 388, 483, 559, 663, 1027
BstMAI GTCTC 1 cut(s) 921
BstMBI GATC 6 cut(s) 370, 385, 480, 556, 660, 1024
BstMWI GCNNNNNNNGC 7 cut(s) 38, 82, 98, 125, 179, 249, 321
BstNI CCWGG 1 cut(s) 1165
BstSCI CCNGG 1 cut(s) 1163
BstSFI CTRYAG 2 cut(s) 198, 1040
BstSLI GKGCMC 2 cut(s) 121, 184
BstUI CGCG 2 cut(s) 271, 307
BstV2I GAAGAC 1 cut(s) 617
BstX2I RGATCY 1 cut(s) 385
BstXI CCANNNNNNTGG 1 cut(s) 356
BstYI RGATCY 1 cut(s) 385
BsuRI GGCC 1 cut(s) 1163
BtgI CCRYGG 1 cut(s) 349
BveI ACCTGC 1 cut(s) 445
CciI TCATGA 3 cut(s) 373, 799, 996
CfoI GCGC 2 cut(s) 279, 307
Cfr13I GGNCC 2 cut(s) 868, 1161
CviAII CATG 9 cut(s) 350, 374, 427, 484, 606, 800, 833, 841, 997
DdeI CTNAG 5 cut(s) 11, 389, 510, 939, 1066
DpnI GATC 6 cut(s) 372, 387, 482, 558, 662, 1026
DpnII GATC 6 cut(s) 370, 385, 480, 556, 660, 1024
Eam1104I CTCTTC 1 cut(s) 804
EarI CTCTTC 1 cut(s) 804
Eco130I CCWWGG 1 cut(s) 349
Eco24I GRGCYC 1 cut(s) 346
Eco32I GATATC 1 cut(s) 898
Eco47I GGWCC 1 cut(s) 868
Eco57I CTGAAG 1 cut(s) 765
Eco88I CYCGRG 2 cut(s) 157, 1111
EcoRII CCWGG 1 cut(s) 1163
EcoRV GATATC 1 cut(s) 898
EcoT14I CCWWGG 1 cut(s) 349
EcoT22I ATGCAT 1 cut(s) 967
EcoT38I GRGCYC 1 cut(s) 346
ErhI CCWWGG 1 cut(s) 349
Esp3I CGTCTC 1 cut(s) 921
FaeI CATG 9 cut(s) 353, 377, 430, 487, 609, 803, 836, 844, 1000
FalI AAGNNNNNCTT 2 cut(s) 612, 644
FatI CATG 9 cut(s) 349, 373, 426, 483, 605, 799, 832, 840, 996
FauI CCCGC 4 cut(s) 94, 201, 248, 264
FauNDI CATATG 2 cut(s) 949, 967
FbaI TGATCA 1 cut(s) 370
FblI GTMKAC 1 cut(s) 837
FriOI GRGCYC 1 cut(s) 346
FspBI CTAG 4 cut(s) 230, 240, 648, 1174
FspI TGCGCA 1 cut(s) 278
GlaI GCGC 2 cut(s) 278, 306
GsaI CCCAGC 1 cut(s) 342
HaeIII GGCC 1 cut(s) 1163
HhaI GCGC 2 cut(s) 279, 307
Hin1II CATG 9 cut(s) 353, 377, 430, 487, 609, 803, 836, 844, 1000
Hin6I GCGC 2 cut(s) 277, 305
HinP1I GCGC 2 cut(s) 277, 305
HinfI GANTC 5 cut(s) 377, 471, 922, 932, 975
HphI GGTGA 1 cut(s) 374
Hpy166II GTNNAC 2 cut(s) 182, 838
Hpy188I TCNGA 4 cut(s) 392, 579, 745, 768
Hpy188III TCNNGA 8 cut(s) 374, 522, 664, 800, 905, 926, 997, 1102
Hpy8I GTNNAC 2 cut(s) 182, 838
HpyAV CCTTC 1 cut(s) 140
HpyCH4III ACNGT 4 cut(s) 65, 139, 179, 517
HpyCH4V TGCA 9 cut(s) 168, 182, 200, 215, 252, 565, 912, 947, 965
HpyF10VI GCNNNNNNNGC 7 cut(s) 38, 82, 98, 125, 179, 249, 321
HpyF3I CTNAG 5 cut(s) 11, 389, 510, 939, 1066
Hsp92II CATG 9 cut(s) 353, 377, 430, 487, 609, 803, 836, 844, 1000
HspAI GCGC 2 cut(s) 277, 305
Ksp22I TGATCA 1 cut(s) 370
Kzo9I GATC 6 cut(s) 370, 385, 480, 556, 660, 1024
LmnI GCTCC 4 cut(s) 287, 312, 349, 784
LweI GCATC 1 cut(s) 766
MaeI CTAG 4 cut(s) 230, 240, 648, 1174
MaeIII GTNAC 1 cut(s) 422
MalI GATC 6 cut(s) 372, 387, 482, 558, 662, 1026
MboI GATC 6 cut(s) 370, 385, 480, 556, 660, 1024
MboII GAAGA 8 cut(s) 617, 625, 703, 758, 784, 785, 821, 1117
MfeI CAATTG 2 cut(s) 560, 1049
MflI RGATCY 1 cut(s) 385
MhlI GDGCHC 3 cut(s) 121, 184, 346
MluCI AATT 8 cut(s) 560, 638, 667, 761, 825, 1013, 1049, 1057
MlyI GAGTC 2 cut(s) 931, 969
Mph1103I ATGCAT 1 cut(s) 967
MroXI GAANNNNTTC 1 cut(s) 828
MseI TTAA 7 cut(s) 630, 678, 687, 698, 732, 816, 849
MslI CAYNNNNRTG 5 cut(s) 232, 272, 354, 431, 1001
MspA1I CMGCKG 2 cut(s) 98, 255
MspCI CTTAAG 1 cut(s) 677
MspR9I CCNGG 1 cut(s) 1165
MunI CAATTG 2 cut(s) 560, 1049
Mva1269I GAATGC 2 cut(s) 34, 914
MvaI CCWGG 1 cut(s) 1165
MvnI CGCG 2 cut(s) 271, 307
MwoI GCNNNNNNNGC 7 cut(s) 38, 82, 98, 125, 179, 249, 321
NcoI CCATGG 1 cut(s) 349
NdeI CATATG 2 cut(s) 949, 967
NdeII GATC 6 cut(s) 370, 385, 480, 556, 660, 1024
NheI GCTAGC 1 cut(s) 239
NlaIII CATG 9 cut(s) 353, 377, 430, 487, 609, 803, 836, 844, 1000
NlaIV GGNNCC 2 cut(s) 345, 492
NmuCI GTSAC 1 cut(s) 422
NsbI TGCGCA 1 cut(s) 278
NsiI ATGCAT 1 cut(s) 967
OliI CACNNNNGTG 2 cut(s) 232, 272
PaeR7I CTCGAG 1 cut(s) 1111
PagI TCATGA 3 cut(s) 373, 799, 996
PcsI WCGNNNNNNNCGW 1 cut(s) 324
PctI GAATGC 2 cut(s) 34, 914
PdmI GAANNNNTTC 1 cut(s) 828
PfeI GAWTC 3 cut(s) 377, 471, 932
PleI GAGTC 2 cut(s) 930, 969
PpsI GAGTC 2 cut(s) 930, 969
PshBI ATTAAT 2 cut(s) 732, 849
Psp6I CCWGG 1 cut(s) 1163
PspFI CCCAGC 1 cut(s) 338
PspGI CCWGG 1 cut(s) 1163
PspN4I GGNNCC 2 cut(s) 345, 492
PspPI GGNCC 2 cut(s) 868, 1161
PspXI VCTCGAGB 1 cut(s) 1111
PstI CTGCAG 1 cut(s) 202
PsuI RGATCY 1 cut(s) 385
PvuII CAGCTG 1 cut(s) 98
RseI CAYNNNNRTG 5 cut(s) 232, 272, 354, 431, 1001
SaqAI TTAA 7 cut(s) 630, 678, 687, 698, 732, 816, 849
Sau3AI GATC 6 cut(s) 370, 385, 480, 556, 660, 1024
Sau96I GGNCC 2 cut(s) 868, 1161
SchI GAGTC 2 cut(s) 931, 969
ScrFI CCNGG 1 cut(s) 1165
SduI GDGCHC 3 cut(s) 121, 184, 346
SfaNI GCATC 1 cut(s) 766
SfcI CTRYAG 2 cut(s) 198, 1040
Sfr274I CTCGAG 1 cut(s) 1111
SinI GGWCC 1 cut(s) 868
SlaI CTCGAG 1 cut(s) 1111
SmiMI CAYNNNNRTG 5 cut(s) 232, 272, 354, 431, 1001
SmlI CTYRAG 3 cut(s) 677, 917, 1111
SmoI CTYRAG 3 cut(s) 677, 917, 1111
Sse9I AATT 8 cut(s) 560, 638, 667, 761, 825, 1013, 1049, 1057
SsiI CCGC 4 cut(s) 101, 208, 255, 271
SspMI CTAG 4 cut(s) 230, 240, 648, 1174
StyD4I CCNGG 1 cut(s) 1163
StyI CCWWGG 1 cut(s) 349
TaaI ACNGT 4 cut(s) 65, 139, 179, 517
TaqI TCGA 4 cut(s) 523, 659, 925, 1112
TasI AATT 8 cut(s) 560, 638, 667, 761, 825, 1013, 1049, 1057
TfiI GAWTC 3 cut(s) 377, 471, 932
Tru1I TTAA 7 cut(s) 630, 678, 687, 698, 732, 816, 849
Tru9I TTAA 7 cut(s) 630, 678, 687, 698, 732, 816, 849
TseFI GTSAC 1 cut(s) 422
Tsp45I GTSAC 1 cut(s) 422
TspDTI ATGAA 8 cut(s) 6, 632, 648, 821, 837, 870, 985, 1117
Vha464I CTTAAG 1 cut(s) 677
VneI GTGCAC 1 cut(s) 180
VpaK11BI GGWCC 1 cut(s) 868
VspI ATTAAT 2 cut(s) 732, 849
XapI RAATTY 3 cut(s) 638, 761, 1013
XhoI CTCGAG 1 cut(s) 1111
XmiI GTMKAC 1 cut(s) 837
XmnI GAANNNNTTC 1 cut(s) 828
XspI CTAG 4 cut(s) 230, 240, 648, 1174
Zsp2I ATGCAT 1 cut(s) 967
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.