RchiOBHm_Chr3g0448801
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0001259
Physical Location & Seq
Reverse (-)
873349 .. 874703
1355 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41622

Sequence Viewer

Length: 1113 bp
ATGGAACATTGGATATTCACAACGCCGGATTACGACGACTTCCGAACTACATGTGTCATCAAAGACAAGGTATGCTCTGTAATAATTGACAGTGGTCTACGAGAGAATTTTGTTGCAAACAAAATTGTGGATTATTTTCAATTGCCGACAGTGAAGCTGAGTGATCCATACTGGATTCCATTTGGAGAGGATGAATATTCACAAGTAACAGAGGTTTGTAAAGTTCCTGTCTCTATGAGAAAATTTTATAAAGAAGAGATTACTTGTCATGTGATTGACATGGACGACACTAATGTGCTTTTTGGAAGACCATGGCATGAAAGCGTCAAAGGTGGTTATTGCAAAGACAACACATATTTATTTAGGTGGGAGTCGCACAAAATTAAAATCAAGCCTAGAAGGAAGAACATCAAGAATGACCATCTTGAGGTGTGTGAAAAGGAACATGAAGAAGCAACTTTGAAGATTGAAGAGAAACTCATTAAGGATAAGGAAGCTGATTCATTCATCACATCGATATCCATGTCATGCATGCCTAATTGTGTTCAAGATCAACCCAAGGAGAAGTCATTGCCCATTCCTTTTCAAGTGGAGGAGTTCAAGTTTCAAGATGCTTATTCTAAACTTGTCTACGGTATTGGATTCATGGTGATTCCTTTTAATTTCGAGAATATTGAAGTTGATGGCTTATCATGTTTTATTCCTACTAATGATCGAGCTGCATACAAGAGGAACTCGAGGTCGAGTTCTTTTCAAGTGGAGGAGACTGATGTAGGACGAGATTTTAGCCAATTTCAACAAAGAATCCCGAAAAGAAAGAAGCGTCTTCACATTAAGAAGAATAATTTGAATATTGGAAATTGGTATTCAAATAGGCTTCTTAATGATGGAATTAATCATAAATTACTATTTTGGATATATCGGGATTCTCGAACAAAATCTTGGTTGGGATTCCAATTATATATTTGCTGGATTCTAGCTCATCTCATATGGCTTTCGACGCTTGACGGAGCCTCTTACTATCGTGTTCACGCTTCCCGCATCATATCTTTCCTGCAGGCATCTCCTTATTTGGAAAAACTTGTGTTGAAGGTATGTTACTTGGCTCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 Retrotrans_gag zf-CCHC

Protein Analysis

370

Amino Acids

43.66

Weight (kDa)

8.17

Isoelectric Point (pI)

41.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 249
AccI GTMKAC 2 cut(s) 97, 630
AciI CCGC 1 cut(s) 1039
AclWI GGATC 1 cut(s) 158
AcsI RAATTY 2 cut(s) 106, 242
AfiI CCNNNNNNNGG 1 cut(s) 427
AflIII ACRYGT 1 cut(s) 50
AjuI GAANNNNNNNTTGG 2 cut(s) 925, 957
AleI CACNNNNGTG 1 cut(s) 293
AluBI AGCT 4 cut(s) 157, 497, 719, 980
AluI AGCT 4 cut(s) 157, 497, 719, 980
Alw26I GTCTC 2 cut(s) 235, 758
AlwI GGATC 1 cut(s) 158
Ama87I CYCGRG 1 cut(s) 736
ApeKI GCWGC 1 cut(s) 719
ApoI RAATTY 2 cut(s) 106, 242
AseI ATTAAT 1 cut(s) 894
AsuHPI GGTGA 1 cut(s) 661
AvaI CYCGRG 1 cut(s) 736
BarI GAAGNNNNNNTAC 1 cut(s) 1082
BbsI GAAGAC 2 cut(s) 313, 818
BbvI GCAGC 1 cut(s) 706
BccI CCATC 3 cut(s) 429, 677, 881
BcoDI GTCTC 2 cut(s) 235, 758
BfaI CTAG 2 cut(s) 396, 977
BfmI CTRYAG 1 cut(s) 1055
BisI GCNGC 1 cut(s) 720
BlsI GCNGC 1 cut(s) 721
BmeT110I CYCGRG 1 cut(s) 736
BmiI GGNNCC 2 cut(s) 1012, 1107
BmsI GCATC 3 cut(s) 601, 1050, 1070
BoxI GACNNNNGTC 1 cut(s) 93
BpiI GAAGAC 2 cut(s) 313, 818
BpuEI CTTGAG 1 cut(s) 446
Bsa29I ATCGAT 1 cut(s) 515
BsaJI CCNNGG 2 cut(s) 311, 558
BsaXI ACNNNNNCTCC 2 cut(s) 587, 617
Bsc4I CCNNNNNNNGG 1 cut(s) 427
Bse1I ACTGG 1 cut(s) 176
Bse3DI GCAATG 1 cut(s) 569
BseCI ATCGAT 1 cut(s) 515
BseDI CCNNGG 2 cut(s) 311, 558
BseGI GGATG 1 cut(s) 196
BseLI CCNNNNNNNGG 1 cut(s) 427
BseMI GCAATG 1 cut(s) 569
BseMII CTCAG 1 cut(s) 149
BseNI ACTGG 1 cut(s) 176
BseRI GAGGAG 2 cut(s) 608, 776
BseXI GCAGC 1 cut(s) 706
BshVI ATCGAT 1 cut(s) 515
BsiHKCI CYCGRG 1 cut(s) 736
BsiSI CCGG 1 cut(s) 26
BslI CCNNNNNNNGG 1 cut(s) 427
BsmAI GTCTC 2 cut(s) 235, 758
BsoBI CYCGRG 1 cut(s) 736
Bsp143I GATC 3 cut(s) 163, 550, 712
Bsp19I CCATGG 1 cut(s) 311
BspACI CCGC 1 cut(s) 1039
BspCNI CTCAG 1 cut(s) 150
BspDI ATCGAT 1 cut(s) 515
BspLI GGNNCC 2 cut(s) 1012, 1107
BspMAI CTGCAG 1 cut(s) 1059
BspPI GGATC 1 cut(s) 158
BsrDI GCAATG 1 cut(s) 569
BsrI ACTGG 1 cut(s) 176
BssECI CCNNGG 2 cut(s) 311, 558
BssMI GATC 3 cut(s) 163, 550, 712
BssT1I CCWWGG 2 cut(s) 311, 558
Bst4CI ACNGT 3 cut(s) 92, 151, 635
Bst6I CTCTTC 2 cut(s) 249, 465
BstC8I GCNNGC 2 cut(s) 533, 1059
BstDEI CTNAG 1 cut(s) 158
BstDSI CCRYGG 1 cut(s) 311
BstF5I GGATG 1 cut(s) 196
BstKTI GATC 3 cut(s) 166, 553, 715
BstMAI GTCTC 2 cut(s) 235, 758
BstMBI GATC 3 cut(s) 163, 550, 712
BstMWI GCNNNNNNNGC 1 cut(s) 1000
BstNSI RCATGY 2 cut(s) 54, 535
BstPAI GACNNNNGTC 1 cut(s) 93
BstSFI CTRYAG 1 cut(s) 1055
BstV1I GCAGC 1 cut(s) 706
BstV2I GAAGAC 2 cut(s) 313, 818
Bsu15I ATCGAT 1 cut(s) 515
BsuTUI ATCGAT 1 cut(s) 515
BtgI CCRYGG 1 cut(s) 311
BtsCI GGATG 1 cut(s) 196
BtsIMutI CAGTG 2 cut(s) 97, 156
Cac8I GCNNGC 2 cut(s) 533, 1059
ClaI ATCGAT 1 cut(s) 515
CseI GACGC 3 cut(s) 313, 812, 1009
DdeI CTNAG 1 cut(s) 158
DpnI GATC 3 cut(s) 165, 552, 714
DpnII GATC 3 cut(s) 163, 550, 712
Eam1104I CTCTTC 2 cut(s) 249, 465
EarI CTCTTC 2 cut(s) 249, 465
Eco130I CCWWGG 2 cut(s) 311, 558
Eco32I GATATC 1 cut(s) 519
Eco88I CYCGRG 1 cut(s) 736
EcoRV GATATC 1 cut(s) 519
EcoT14I CCWWGG 2 cut(s) 311, 558
EcoT22I ATGCAT 1 cut(s) 533
ErhI CCWWGG 2 cut(s) 311, 558
FauI CCCGC 1 cut(s) 1046
FauNDI CATATG 1 cut(s) 989
FblI GTMKAC 2 cut(s) 97, 630
Fnu4HI GCNGC 1 cut(s) 720
FokI GGATG 1 cut(s) 203
Fsp4HI GCNGC 1 cut(s) 720
FspBI CTAG 2 cut(s) 396, 977
GluI GCNGC 1 cut(s) 720
HapII CCGG 1 cut(s) 26
HgaI GACGC 3 cut(s) 313, 812, 1009
HinfI GANTC 9 cut(s) 175, 371, 500, 642, 652, 804, 926, 951, 973
HpaII CCGG 1 cut(s) 26
HphI GGTGA 1 cut(s) 661
Hpy166II GTNNAC 3 cut(s) 98, 631, 1030
Hpy188I TCNGA 1 cut(s) 44
Hpy188III TCNNGA 8 cut(s) 412, 425, 548, 608, 667, 808, 923, 930
Hpy8I GTNNAC 3 cut(s) 98, 631, 1030
Hpy99I CGWCG 2 cut(s) 38, 1003
HpyAV CCTTC 2 cut(s) 393, 1084
HpyCH4III ACNGT 3 cut(s) 92, 151, 635
HpyCH4V TGCA 5 cut(s) 116, 342, 531, 722, 1057
HpyF10VI GCNNNNNNNGC 1 cut(s) 1000
HpyF3I CTNAG 1 cut(s) 158
Kzo9I GATC 3 cut(s) 163, 550, 712
LmnI GCTCC 2 cut(s) 1010, 1111
LpnPI CCDG 6 cut(s) 39, 157, 240, 955, 1043, 1067
Lsp1109I GCAGC 1 cut(s) 706
LweI GCATC 3 cut(s) 601, 1050, 1070
MaeI CTAG 2 cut(s) 396, 977
MaeIII GTNAC 2 cut(s) 205, 1097
MalI GATC 3 cut(s) 165, 552, 714
MboI GATC 3 cut(s) 163, 550, 712
MboII GAAGA 8 cut(s) 266, 318, 415, 461, 475, 482, 818, 850
MfeI CAATTG 1 cut(s) 140
MlyI GAGTC 1 cut(s) 380
MnlI CCTC 8 cut(s) 181, 205, 421, 586, 723, 732, 754, 1024
Mph1103I ATGCAT 1 cut(s) 533
MseI TTAA 6 cut(s) 384, 483, 660, 834, 882, 894
MslI CAYNNNNRTG 1 cut(s) 293
MspI CCGG 1 cut(s) 26
MunI CAATTG 1 cut(s) 140
MwoI GCNNNNNNNGC 1 cut(s) 1000
NcoI CCATGG 1 cut(s) 311
NdeI CATATG 1 cut(s) 989
NdeII GATC 3 cut(s) 163, 550, 712
NlaIV GGNNCC 2 cut(s) 1012, 1107
NsiI ATGCAT 1 cut(s) 533
NspI RCATGY 2 cut(s) 54, 535
OliI CACNNNNGTG 1 cut(s) 293
PaeI GCATGC 1 cut(s) 535
PaeR7I CTCGAG 1 cut(s) 736
PciI ACATGT 1 cut(s) 50
PcsI WCGNNNNNNNCGW 1 cut(s) 928
PfeI GAWTC 8 cut(s) 175, 500, 642, 652, 804, 926, 951, 973
PkrI GCNGC 1 cut(s) 721
PleI GAGTC 1 cut(s) 379
PpsI GAGTC 1 cut(s) 379
PscI ACATGT 1 cut(s) 50
PshAI GACNNNNGTC 1 cut(s) 93
PshBI ATTAAT 1 cut(s) 894
PsiI TTATAA 1 cut(s) 249
PspN4I GGNNCC 2 cut(s) 1012, 1107
PspXI VCTCGAGB 1 cut(s) 736
PstI CTGCAG 1 cut(s) 1059
RseI CAYNNNNRTG 1 cut(s) 293
SaqAI TTAA 6 cut(s) 384, 483, 660, 834, 882, 894
SatI GCNGC 1 cut(s) 720
Sau3AI GATC 3 cut(s) 163, 550, 712
SbfI CCTGCAGG 1 cut(s) 1059
SchI GAGTC 1 cut(s) 380
SdaI CCTGCAGG 1 cut(s) 1059
SfaNI GCATC 3 cut(s) 601, 1050, 1070
SfcI CTRYAG 1 cut(s) 1055
Sfr274I CTCGAG 1 cut(s) 736
SlaI CTCGAG 1 cut(s) 736
SmiMI CAYNNNNRTG 1 cut(s) 293
SmlI CTYRAG 2 cut(s) 425, 736
SmoI CTYRAG 2 cut(s) 425, 736
SphI GCATGC 1 cut(s) 535
Sse8387I CCTGCAGG 1 cut(s) 1059
SsiI CCGC 1 cut(s) 1039
SspI AATATT 3 cut(s) 197, 673, 853
SspMI CTAG 2 cut(s) 396, 977
StyI CCWWGG 2 cut(s) 311, 558
TaaI ACNGT 3 cut(s) 92, 151, 635
TaqI TCGA 7 cut(s) 515, 666, 715, 737, 743, 931, 998
TfiI GAWTC 8 cut(s) 175, 500, 642, 652, 804, 926, 951, 973
Tru1I TTAA 6 cut(s) 384, 483, 660, 834, 882, 894
Tru9I TTAA 6 cut(s) 384, 483, 660, 834, 882, 894
TscAI CASTG 2 cut(s) 97, 156
TseI GCWGC 1 cut(s) 719
TspDTI ATGAA 6 cut(s) 207, 333, 462, 492, 496, 634
TspGWI ACGGA 1 cut(s) 1023
TspRI CASTG 2 cut(s) 97, 156
VspI ATTAAT 1 cut(s) 894
XapI RAATTY 2 cut(s) 106, 242
XceI RCATGY 2 cut(s) 54, 535
XhoI CTCGAG 1 cut(s) 736
XmiI GTMKAC 2 cut(s) 97, 630
XspI CTAG 2 cut(s) 396, 977
Zsp2I ATGCAT 1 cut(s) 533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.