Rh7DG402600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0001259
Physical Location & Seq
Reverse (-)
55506803 .. 55510283
3481 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG402600.1

Sequence Viewer

Length: 303 bp
ATGGCAAGGTGGGAGTCACACAAAATTAAAATCAAGCCTAGAAGGAAGAACGTCAAGAATGACCATCCTGAGGTGTGTGAAAAGGAACATGAAGAAGCAACTTTGAAGATTGAAGAGAAACTCATTAAGGATAAGGAAGCTGATTCATTCATCACATCGATATCCATGTCATGCATGCCTAATTGTGTTCAAGATCAACCGAAGGAGAAGTCATTGCCCATTCCTTTTCAAGTGGAGGAGTTCAAGTTTCAAGATGCTTATTCTAAACTTGTCTACGGTATTGGATTCATGGCTATAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

11.69

Weight (kDa)

6.83

Isoelectric Point (pI)

52.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 273
AfiI CCNNNNNNNGG 1 cut(s) 70
AgsI TTSAA 6 cut(s) 106, 113, 191, 230, 244, 251
AluBI AGCT 1 cut(s) 140
AluI AGCT 1 cut(s) 140
ArsI GACNNNNNNTTYG 2 cut(s) 194, 226
AxyI CCTNAGG 1 cut(s) 69
BccI CCATC 1 cut(s) 72
BfaI CTAG 1 cut(s) 39
BmsI GCATC 1 cut(s) 244
Bsa29I ATCGAT 1 cut(s) 158
BsaXI ACNNNNNCTCC 2 cut(s) 230, 260
Bsc4I CCNNNNNNNGG 1 cut(s) 70
Bse21I CCTNAGG 1 cut(s) 69
Bse3DI GCAATG 1 cut(s) 212
BseCI ATCGAT 1 cut(s) 158
BseGI GGATG 1 cut(s) 64
BseLI CCNNNNNNNGG 1 cut(s) 70
BseMI GCAATG 1 cut(s) 212
BseMII CTCAG 1 cut(s) 60
BseRI GAGGAG 1 cut(s) 251
BshVI ATCGAT 1 cut(s) 158
BslI CCNNNNNNNGG 1 cut(s) 70
Bsp143I GATC 1 cut(s) 193
BspCNI CTCAG 1 cut(s) 61
BspDI ATCGAT 1 cut(s) 158
BsrDI GCAATG 1 cut(s) 212
BssMI GATC 1 cut(s) 193
Bst4CI ACNGT 1 cut(s) 278
Bst6I CTCTTC 1 cut(s) 108
BstC8I GCNNGC 1 cut(s) 176
BstDEI CTNAG 1 cut(s) 69
BstF5I GGATG 1 cut(s) 64
BstKTI GATC 1 cut(s) 196
BstMBI GATC 1 cut(s) 193
BstNSI RCATGY 1 cut(s) 178
Bsu15I ATCGAT 1 cut(s) 158
Bsu36I CCTNAGG 1 cut(s) 69
BsuTUI ATCGAT 1 cut(s) 158
BtsCI GGATG 1 cut(s) 64
Cac8I GCNNGC 1 cut(s) 176
ClaI ATCGAT 1 cut(s) 158
CviAII CATG 5 cut(s) 89, 166, 171, 175, 289
CviJI RGCY 3 cut(s) 37, 140, 293
CviKI_1 RGCY 3 cut(s) 37, 140, 293
DdeI CTNAG 1 cut(s) 69
DpnI GATC 1 cut(s) 195
DpnII GATC 1 cut(s) 193
Eam1104I CTCTTC 1 cut(s) 108
EarI CTCTTC 1 cut(s) 108
Eco32I GATATC 1 cut(s) 162
Eco81I CCTNAGG 1 cut(s) 69
EcoRV GATATC 1 cut(s) 162
EcoT22I ATGCAT 1 cut(s) 176
FaeI CATG 5 cut(s) 92, 169, 174, 178, 292
FaiI YATR 7 cut(s) 90, 167, 172, 176, 290, 296, 301
FatI CATG 5 cut(s) 88, 165, 170, 174, 288
FblI GTMKAC 1 cut(s) 273
FokI GGATG 1 cut(s) 51
FspBI CTAG 1 cut(s) 39
Hin1II CATG 5 cut(s) 92, 169, 174, 178, 292
HinfI GANTC 3 cut(s) 14, 143, 285
Hpy166II GTNNAC 1 cut(s) 274
Hpy188III TCNNGA 4 cut(s) 55, 68, 191, 251
Hpy8I GTNNAC 1 cut(s) 274
HpyAV CCTTC 2 cut(s) 36, 196
HpyCH4III ACNGT 1 cut(s) 278
HpyCH4IV ACGT 1 cut(s) 51
HpyCH4V TGCA 1 cut(s) 174
HpyF3I CTNAG 1 cut(s) 69
HpySE526I ACGT 1 cut(s) 51
Hsp92II CATG 5 cut(s) 92, 169, 174, 178, 292
Kzo9I GATC 1 cut(s) 193
LpnPI CCDG 1 cut(s) 81
LweI GCATC 1 cut(s) 244
MaeI CTAG 1 cut(s) 39
MaeII ACGT 1 cut(s) 51
MaeIII GTNAC 1 cut(s) 15
MalI GATC 1 cut(s) 195
MboI GATC 1 cut(s) 193
MboII GAAGA 4 cut(s) 58, 104, 118, 125
MluCI AATT 2 cut(s) 24, 181
MlyI GAGTC 1 cut(s) 23
MnlI CCTC 2 cut(s) 64, 229
Mph1103I ATGCAT 1 cut(s) 176
MseI TTAA 2 cut(s) 27, 126
NdeII GATC 1 cut(s) 193
NlaIII CATG 5 cut(s) 92, 169, 174, 178, 292
NmuCI GTSAC 1 cut(s) 15
NsiI ATGCAT 1 cut(s) 176
NspI RCATGY 1 cut(s) 178
PaeI GCATGC 1 cut(s) 178
PfeI GAWTC 2 cut(s) 143, 285
PleI GAGTC 1 cut(s) 22
PpsI GAGTC 1 cut(s) 22
SaqAI TTAA 2 cut(s) 27, 126
Sau3AI GATC 1 cut(s) 193
SchI GAGTC 1 cut(s) 23
SetI ASST 4 cut(s) 11, 54, 75, 142
SfaNI GCATC 1 cut(s) 244
SphI GCATGC 1 cut(s) 178
Sse9I AATT 2 cut(s) 24, 181
SspMI CTAG 1 cut(s) 39
TaaI ACNGT 1 cut(s) 278
TaiI ACGT 1 cut(s) 54
TaqI TCGA 1 cut(s) 158
TasI AATT 2 cut(s) 24, 181
TfiI GAWTC 2 cut(s) 143, 285
Tru1I TTAA 2 cut(s) 27, 126
Tru9I TTAA 2 cut(s) 27, 126
TseFI GTSAC 1 cut(s) 15
Tsp45I GTSAC 1 cut(s) 15
TspDTI ATGAA 4 cut(s) 105, 135, 139, 277
XceI RCATGY 1 cut(s) 178
XmiI GTMKAC 1 cut(s) 273
XspI CTAG 1 cut(s) 39
Zsp2I ATGCAT 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.