MD03G1091300.v1.1

(R)-mandelonitrile lyase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Forward (+)
7593091 .. 7593442
352 bp
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UTR
Exon/CDS
Intron
MD03G1091300.v1.1.491

Sequence Viewer

Length: 228 bp
ATGGAGAAATCAACAACTGCTGCTATATTGTTGCTCTTGTACTTTTTTGGGTTCTTCCCTCAACCAGAAGTTCACTCATTCGCCAATCCATCTGATGACCTTGATTTTGGCTACTTGAAATTTGTACGTAACGCAACTGATCTACCATTACAAGAAGAATATGACTACATTGTTGTGGGAGGGGGCACGGCAGGGTGTCCGTTGGCAGCAACTTTATCTGCAAACTAA

Protein Analysis

76

Amino Acids

8.18

Weight (kDa)

4.16

Isoelectric Point (pI)

42.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000533)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g08950 FvH4_6g09340
malus_domestica MD00G1012800.v1.1 MD00G1012900.v1.1 MD00G1013000.v1.1 MD00G1013300.v1.1 MD03G1090900.v1.1 MD03G1091100.v1.1 MD03G1091300.v1.1 MD03G1091400.v1.1 MD03G1091700.v1.1 MD03G1091900.v1.1 MD10G1279300.v1.1 MD13G1264000.v1.1 MD13G1264100.v1.1 MD13G1264200.v1.1 MD13G1264500.v1.1 MD16G1093000.v1.1 MD16G1093100.v1.1 MD16G1265300.v1.1 MD16G1265500.v1.1
prunus_persica Prupe.1G007400_v2.0.a1 Prupe.1G092200_v2.0.a1 Prupe.1G092300_v2.0.a1 Prupe.1G092400_v2.0.a1 Prupe.1G092500_v2.0.a1 Prupe.1G092700_v2.0.a1 Prupe.1G092900_v2.0.a1 Prupe.1G093000_v2.0.a1 Prupe.1G093200_v2.0.a1 Prupe.1G093300_v2.0.a1 Prupe.1G093500_v2.0.a1 Prupe.1G093600_v2.0.a1 Prupe.1G093600_v2.0.a1 Prupe.1G093600_v2.0.a1 Prupe.1G093700_v2.0.a1 Prupe.1G093800_v2.0.a1 Prupe.1G093800_v2.0.a1 Prupe.1G096400_v2.0.a1 Prupe.1G096500_v2.0.a1 Prupe.1G096500_v2.0.a1
pyrus_communis pycom03g07290 pycom03g07320 pycom10g23300 pycom11g08780 pycom11g08790 pycom11g08810 pycom11g08820 pycom13g23800
rosa_chinensis RchiOBHm_Chr4g0403711 RchiOBHm_Chr4g0403741 RchiOBHm_Chr4g0403781
rosa_laevigata RLG00000008950 RLG00000008955 RLG00000008957 RLG00000008959
rosa_multiflora Rmu_co8470309.1_g000001 Rmu_sc0001496.1_g000015 Rmu_sc0004115.1_g000016 Rmu_sc0004388.1_g000007 Rmu_sc0007461.1_g000001 Rmu_sc0010412.1_g000002
rosa_roxburghii Rroxscaffold_5G00348330 Rroxscaffold_5G00348340 Rroxscaffold_5G00348350 Rroxscaffold_5G00348400
rosa_rugosa Rorug04G0045400 Rorug04G0045500 Rorug04G0045600
rosa_samantha Rh4AG120800 Rh4AG121000 Rh4BG113600 Rh4BG113900 Rh4BG114000 Rh4CG128300 Rh4CG129200 Rh4CG129300 Rh4CG129400 Rh4DG113700 Rh4DG113800 Rh4DG113900
rosa_wichuraiana Rw0G001200 Rw4G009830 Rw4G009850 Rw4G009860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 119
AfaI GTAC 2 cut(s) 41, 126
AgsI TTSAA 1 cut(s) 118
ApeKI GCWGC 2 cut(s) 20, 206
ApoI RAATTY 1 cut(s) 119
ArsI GACNNNNNNTTYG 2 cut(s) 89, 121
BaeGI GKGCMC 1 cut(s) 188
BbvI GCAGC 2 cut(s) 7, 218
BccI CCATC 1 cut(s) 97
BceAI ACGGC 1 cut(s) 204
BisI GCNGC 2 cut(s) 21, 207
BlsI GCNGC 2 cut(s) 22, 208
BsaAI YACGTR 1 cut(s) 128
BseSI GKGCMC 1 cut(s) 188
BseXI GCAGC 2 cut(s) 7, 218
Bsp1286I GDGCHC 1 cut(s) 188
Bsp143I GATC 1 cut(s) 139
BssMI GATC 1 cut(s) 139
BstBAI YACGTR 1 cut(s) 128
BstKTI GATC 1 cut(s) 142
BstMBI GATC 1 cut(s) 139
BstSLI GKGCMC 1 cut(s) 188
BstSNI TACGTA 1 cut(s) 128
BstV1I GCAGC 2 cut(s) 7, 218
Csp6I GTAC 2 cut(s) 40, 125
CviJI RGCY 1 cut(s) 111
CviKI_1 RGCY 1 cut(s) 111
CviQI GTAC 2 cut(s) 40, 125
DpnI GATC 1 cut(s) 141
DpnII GATC 1 cut(s) 139
Eco105I TACGTA 1 cut(s) 128
FaiI YATR 2 cut(s) 26, 162
Fnu4HI GCNGC 2 cut(s) 21, 207
Fsp4HI GCNGC 2 cut(s) 21, 207
GluI GCNGC 2 cut(s) 21, 207
Hpy166II GTNNAC 1 cut(s) 73
Hpy188I TCNGA 1 cut(s) 94
Hpy8I GTNNAC 1 cut(s) 73
HpyCH4IV ACGT 1 cut(s) 127
HpyCH4V TGCA 1 cut(s) 221
HpySE526I ACGT 1 cut(s) 127
Kzo9I GATC 1 cut(s) 139
LpnPI CCDG 2 cut(s) 78, 177
Lsp1109I GCAGC 2 cut(s) 7, 218
MaeII ACGT 1 cut(s) 127
MaeIII GTNAC 1 cut(s) 128
MalI GATC 1 cut(s) 141
MboI GATC 1 cut(s) 139
MboII GAAGA 2 cut(s) 46, 167
MhlI GDGCHC 1 cut(s) 188
MluCI AATT 1 cut(s) 119
MnlI CCTC 2 cut(s) 69, 173
MslI CAYNNNNRTG 1 cut(s) 173
NdeII GATC 1 cut(s) 139
PkrI GCNGC 2 cut(s) 22, 208
Ppu21I YACGTR 1 cut(s) 128
RsaI GTAC 2 cut(s) 41, 126
RsaNI GTAC 2 cut(s) 40, 125
RseI CAYNNNNRTG 1 cut(s) 173
SatI GCNGC 2 cut(s) 21, 207
Sau3AI GATC 1 cut(s) 139
SduI GDGCHC 1 cut(s) 188
SetI ASST 2 cut(s) 102, 130
SgeI CNNG 7 cut(s) 49, 77, 113, 127, 164, 199, 204
SmiMI CAYNNNNRTG 1 cut(s) 173
SnaBI TACGTA 1 cut(s) 128
Sse9I AATT 1 cut(s) 119
TaiI ACGT 1 cut(s) 130
TasI AATT 1 cut(s) 119
TatI WGTACW 1 cut(s) 39
TseI GCWGC 2 cut(s) 20, 206
TspGWI ACGGA 1 cut(s) 189
XapI RAATTY 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.