MD13G1264000.v1.1

(R)-mandelonitrile lyase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Forward (+)
33968633 .. 33969073
441 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1264000.v1.1.491

Sequence Viewer

Length: 441 bp
ATGTTTACTATTAATTTTAAGCTGTCATCTGATGTAGGTTTGTCAGCTATTGGAATCATGTATAGTGATTCGAACGGGAGGTCCCATTGTGCATTTGTACGCAGTAAAGCGGAGGTTCTATTGAGTGCCAGTGCAATTGGGAGCCATCAACTTCTACAACTTAATGGTATTGGCCCAGAATCTTATTTGTCATCTCTTAAAATCCCAGTTATTAGTCCCCATCCATACATTAGGCAGTTTATGTATGACAATCCTCGTAACTTAATTAACATTTTGCCCCCATTTCCACTAGAGCGTTCACCTCTGAAGATTGTAGGTATTACAAGCGATTTCTACATAGAGAGTATCTCCGCTTCTCCATTTTCTACTCCACCATTTATTGTTTTTCCTAATCCACCTAATCCATCTAATCTCTTAGGCTACAATCATCCTTTGACGTGA

Protein Analysis

147

Amino Acids

16.03

Weight (kDa)

7.91

Isoelectric Point (pI)

54.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000533)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g08950 FvH4_6g09340
malus_domestica MD00G1012800.v1.1 MD00G1012900.v1.1 MD00G1013000.v1.1 MD00G1013300.v1.1 MD03G1090900.v1.1 MD03G1091100.v1.1 MD03G1091300.v1.1 MD03G1091400.v1.1 MD03G1091700.v1.1 MD03G1091900.v1.1 MD10G1279300.v1.1 MD13G1264000.v1.1 MD13G1264100.v1.1 MD13G1264200.v1.1 MD13G1264500.v1.1 MD16G1093000.v1.1 MD16G1093100.v1.1 MD16G1265300.v1.1 MD16G1265500.v1.1
prunus_persica Prupe.1G007400_v2.0.a1 Prupe.1G092200_v2.0.a1 Prupe.1G092300_v2.0.a1 Prupe.1G092400_v2.0.a1 Prupe.1G092500_v2.0.a1 Prupe.1G092700_v2.0.a1 Prupe.1G092900_v2.0.a1 Prupe.1G093000_v2.0.a1 Prupe.1G093200_v2.0.a1 Prupe.1G093300_v2.0.a1 Prupe.1G093500_v2.0.a1 Prupe.1G093600_v2.0.a1 Prupe.1G093600_v2.0.a1 Prupe.1G093600_v2.0.a1 Prupe.1G093700_v2.0.a1 Prupe.1G093800_v2.0.a1 Prupe.1G093800_v2.0.a1 Prupe.1G096400_v2.0.a1 Prupe.1G096500_v2.0.a1 Prupe.1G096500_v2.0.a1
pyrus_communis pycom03g07290 pycom03g07320 pycom10g23300 pycom11g08780 pycom11g08790 pycom11g08810 pycom11g08820 pycom13g23800
rosa_chinensis RchiOBHm_Chr4g0403711 RchiOBHm_Chr4g0403741 RchiOBHm_Chr4g0403781
rosa_laevigata RLG00000008950 RLG00000008955 RLG00000008957 RLG00000008959
rosa_multiflora Rmu_co8470309.1_g000001 Rmu_sc0001496.1_g000015 Rmu_sc0004115.1_g000016 Rmu_sc0004388.1_g000007 Rmu_sc0007461.1_g000001 Rmu_sc0010412.1_g000002
rosa_roxburghii Rroxscaffold_5G00348330 Rroxscaffold_5G00348340 Rroxscaffold_5G00348350 Rroxscaffold_5G00348400
rosa_rugosa Rorug04G0045400 Rorug04G0045500 Rorug04G0045600
rosa_samantha Rh4AG120800 Rh4AG121000 Rh4BG113600 Rh4BG113900 Rh4BG114000 Rh4CG128300 Rh4CG129200 Rh4CG129300 Rh4CG129400 Rh4DG113700 Rh4DG113800 Rh4DG113900
rosa_wichuraiana Rw0G001200 Rw4G009830 Rw4G009850 Rw4G009860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 110, 351
AcuI CTGAAG 1 cut(s) 326
AfaI GTAC 1 cut(s) 99
AjiI CACGTC 1 cut(s) 438
AloI GAACNNNNNNTCC 2 cut(s) 65, 97
AluBI AGCT 2 cut(s) 22, 47
AluI AGCT 2 cut(s) 22, 47
AoxI GGCC 1 cut(s) 172
ArsI GACNNNNNNTTYG 2 cut(s) 65, 97
AseI ATTAAT 1 cut(s) 12
AspS9I GGNCC 2 cut(s) 81, 173
AsuHPI GGTGA 1 cut(s) 291
AsuII TTCGAA 1 cut(s) 71
AvaII GGWCC 1 cut(s) 81
BarI GAAGNNNNNNTAC 2 cut(s) 337, 369
BccI CCATC 3 cut(s) 153, 228, 412
BfaI CTAG 1 cut(s) 290
Bme18I GGWCC 1 cut(s) 81
BmgBI CACGTC 1 cut(s) 438
BmgT120I GGNCC 2 cut(s) 81, 173
BmiI GGNNCC 2 cut(s) 83, 143
BmrI ACTGGG 1 cut(s) 200
BmuI ACTGGG 1 cut(s) 200
BplI GAGNNNNNCTC 2 cut(s) 332, 364
Bpu14I TTCGAA 1 cut(s) 71
Bse1I ACTGG 2 cut(s) 129, 206
BseGI GGATG 2 cut(s) 220, 427
BseNI ACTGG 2 cut(s) 129, 206
BshFI GGCC 1 cut(s) 174
BslFI GGGAC 2 cut(s) 67, 201
BsmFI GGGAC 2 cut(s) 67, 201
BsnI GGCC 1 cut(s) 174
Bsp119I TTCGAA 1 cut(s) 71
BspACI CCGC 2 cut(s) 110, 351
BspANI GGCC 1 cut(s) 174
BspLI GGNNCC 2 cut(s) 83, 143
BspT104I TTCGAA 1 cut(s) 71
BsrI ACTGG 2 cut(s) 129, 206
BstBI TTCGAA 1 cut(s) 71
BstDEI CTNAG 1 cut(s) 415
BstF5I GGATG 2 cut(s) 220, 427
BsuRI GGCC 1 cut(s) 174
BtrI CACGTC 1 cut(s) 438
BtsCI GGATG 2 cut(s) 220, 427
BtsIMutI CAGTG 1 cut(s) 136
Cfr13I GGNCC 2 cut(s) 81, 173
Csp6I GTAC 1 cut(s) 98
CviAII CATG 1 cut(s) 58
CviJI RGCY 5 cut(s) 22, 47, 144, 174, 420
CviKI_1 RGCY 5 cut(s) 22, 47, 144, 174, 420
CviQI GTAC 1 cut(s) 98
DdeI CTNAG 1 cut(s) 415
Eco47I GGWCC 1 cut(s) 81
Eco57I CTGAAG 1 cut(s) 326
EcoO109I RGGNCCY 1 cut(s) 81
FaeI CATG 1 cut(s) 61
FaiI YATR 6 cut(s) 59, 63, 226, 242, 246, 338
FaqI GGGAC 2 cut(s) 67, 201
FatI CATG 1 cut(s) 57
FokI GGATG 2 cut(s) 207, 414
FspBI CTAG 1 cut(s) 290
HaeIII GGCC 1 cut(s) 174
Hin1II CATG 1 cut(s) 61
HinfI GANTC 3 cut(s) 54, 68, 179
HphI GGTGA 1 cut(s) 291
Hpy166II GTNNAC 2 cut(s) 6, 299
Hpy188I TCNGA 2 cut(s) 31, 306
Hpy8I GTNNAC 2 cut(s) 6, 299
HpyCH4IV ACGT 1 cut(s) 437
HpyCH4V TGCA 2 cut(s) 92, 134
HpyF3I CTNAG 1 cut(s) 415
HpySE526I ACGT 1 cut(s) 437
Hsp92II CATG 1 cut(s) 61
LmnI GCTCC 1 cut(s) 141
LpnPI CCDG 3 cut(s) 142, 189, 219
MaeI CTAG 1 cut(s) 290
MaeII ACGT 1 cut(s) 437
MaeIII GTNAC 1 cut(s) 257
MboII GAAGA 1 cut(s) 319
MfeI CAATTG 1 cut(s) 135
MluCI AATT 3 cut(s) 13, 135, 264
MnlI CCTC 4 cut(s) 72, 106, 264, 312
MseI TTAA 6 cut(s) 12, 18, 162, 198, 263, 267
MunI CAATTG 1 cut(s) 135
NlaIII CATG 1 cut(s) 61
NlaIV GGNNCC 2 cut(s) 83, 143
NspV TTCGAA 1 cut(s) 71
PacI TTAATTAA 1 cut(s) 267
PfeI GAWTC 3 cut(s) 54, 68, 179
PpuMI RGGWCCY 1 cut(s) 81
PshBI ATTAAT 1 cut(s) 12
Psp5II RGGWCCY 1 cut(s) 81
PspN4I GGNNCC 2 cut(s) 83, 143
PspPI GGNCC 2 cut(s) 81, 173
PspPPI RGGWCCY 1 cut(s) 81
RsaI GTAC 1 cut(s) 99
RsaNI GTAC 1 cut(s) 98
SaqAI TTAA 6 cut(s) 12, 18, 162, 198, 263, 267
Sau96I GGNCC 2 cut(s) 81, 173
SetI ASST 9 cut(s) 24, 40, 49, 83, 117, 304, 319, 400, 440
SfuI TTCGAA 1 cut(s) 71
SgeI CNNG 8 cut(s) 70, 88, 141, 188, 218, 267, 302, 336
SinI GGWCC 1 cut(s) 81
Sse9I AATT 3 cut(s) 13, 135, 264
SsiI CCGC 2 cut(s) 110, 351
SspMI CTAG 1 cut(s) 290
TaiI ACGT 1 cut(s) 440
TaqI TCGA 1 cut(s) 71
TasI AATT 3 cut(s) 13, 135, 264
TfiI GAWTC 3 cut(s) 54, 68, 179
Tru1I TTAA 6 cut(s) 12, 18, 162, 198, 263, 267
Tru9I TTAA 6 cut(s) 12, 18, 162, 198, 263, 267
TscAI CASTG 1 cut(s) 136
TspRI CASTG 1 cut(s) 136
VpaK11BI GGWCC 1 cut(s) 81
VspI ATTAAT 1 cut(s) 12
XspI CTAG 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.