Rh4BG113600

(R)-mandelonitrile lyase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Reverse (-)
19231600 .. 19261140
29541 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG113600.1

Sequence Viewer

Length: 1227 bp
ATGCTGGTTTCTACTCCAAAGCTGACAGGGAATTCTTTGTTAAATCTGGAATTAAATGGGACATGGATTTGGTTGATAAGGCATATCACTGGGTTGAAAGCACTGTCGTCTCTCGTCCATTGGCAATCTCTTGTGAAAGAAGCATTGTTGGAGGCTGGTGTTGGTCCAAACAATGGATTCAGTTTGGATCACATTAAGGGAACTAAAGTTGGCGGTTCTACTTTTGATAGACATGGAAGGAGACACGGAGCTGTTGAATTGCTTAACAGAGGAAACCTAAAGAACTTGCGAGTGGGAATTCATGCCACAGTCGAGAAAATCATCTTCTCTTCCAAAGAATCAGGTGTTTCGGCTCGAGGGGTGGTATATATTGATTCTAATGGGAGGTCTCATCGGGCATTTGTACGTGGTAAGGGAGAGGTTATTCTGAGTGCAGGGACAATTGGGAGTCCTCAGCTTCTACTTCTTAGCGGTGTTGGCCCTCAGTCCTATCTATCATCTTTGAAAATCCCAGTTGTTCACCCCCAACCTCACACTGGAAACTTTATGTATGACAATCCTCGTAATTTCATTAACATTTTGTCCCCATTTCCACTACTGCCCTCAACTGTAAAGATTGTCGGCATTACCGACCATTTCTACATAGAGGCCCTCTCTAGCACGCCCATTTCTACTACACCCTACAGTGTTTTTCCAGATCCGGCTAAACTTGTAAAGATAAATTCAAGTTTAGGACTCATTGCCATCAAATTAGTAGGACCTTTGTCTTATGGTACTCTGAAGCTTCAATCATCCTCTGATGTGAGAGTTGGTCCAAATGTCCGCTTCAACTACTTTGCACATCCCTTGGACCTTGCTCGTTGTGTTTCTGGCATGAAGAAGATTGGGGAGCTATTAAATACCAAGTCACTGAAAGCATTTAAGGTTCAAGCTTCGTCGAGCACAAAAGCTTACAATTTTTATGGTCCAACTTTACCTATGAACCGGACAGATGATGCATCTTTTGGAGAATTTTGTCGTGATACAGTATCAACAATTTGGCATTTCCACGGCGGATGCCTTGTCGGAAAGGTGGTCGATAGAAGCTTGCGGGTCATGGGAATCGATGCTTTGCGTGTTGTTGACGCATCCACATTCAATTTCACACCGGGGACAAATCCTCAGGCCACACTTATGATGTTGGGCAGGTACATTGGCATTAAGATGCTGCAACAAAGATCTTCTTAA

Protein Analysis

408

Amino Acids

44.36

Weight (kDa)

9.98

Isoelectric Point (pI)

28.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GMC_oxred_N PF00732 76 - 164 4.9e-11 GMC oxidoreductase
GMC_oxred_C PF05199 254 - 395 1.2e-25 GMC oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000533)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g08950 FvH4_6g09340
malus_domestica MD00G1012800.v1.1 MD00G1012900.v1.1 MD00G1013000.v1.1 MD00G1013300.v1.1 MD03G1090900.v1.1 MD03G1091100.v1.1 MD03G1091300.v1.1 MD03G1091400.v1.1 MD03G1091700.v1.1 MD03G1091900.v1.1 MD10G1279300.v1.1 MD13G1264000.v1.1 MD13G1264100.v1.1 MD13G1264200.v1.1 MD13G1264500.v1.1 MD16G1093000.v1.1 MD16G1093100.v1.1 MD16G1265300.v1.1 MD16G1265500.v1.1
prunus_persica Prupe.1G007400_v2.0.a1 Prupe.1G092200_v2.0.a1 Prupe.1G092300_v2.0.a1 Prupe.1G092400_v2.0.a1 Prupe.1G092500_v2.0.a1 Prupe.1G092700_v2.0.a1 Prupe.1G092900_v2.0.a1 Prupe.1G093000_v2.0.a1 Prupe.1G093200_v2.0.a1 Prupe.1G093300_v2.0.a1 Prupe.1G093500_v2.0.a1 Prupe.1G093600_v2.0.a1 Prupe.1G093600_v2.0.a1 Prupe.1G093600_v2.0.a1 Prupe.1G093700_v2.0.a1 Prupe.1G093800_v2.0.a1 Prupe.1G093800_v2.0.a1 Prupe.1G096400_v2.0.a1 Prupe.1G096500_v2.0.a1 Prupe.1G096500_v2.0.a1
pyrus_communis pycom03g07290 pycom03g07320 pycom10g23300 pycom11g08780 pycom11g08790 pycom11g08810 pycom11g08820 pycom13g23800
rosa_chinensis RchiOBHm_Chr4g0403711 RchiOBHm_Chr4g0403741 RchiOBHm_Chr4g0403781
rosa_laevigata RLG00000008950 RLG00000008955 RLG00000008957 RLG00000008959
rosa_multiflora Rmu_co8470309.1_g000001 Rmu_sc0001496.1_g000015 Rmu_sc0004115.1_g000016 Rmu_sc0004388.1_g000007 Rmu_sc0007461.1_g000001 Rmu_sc0010412.1_g000002
rosa_roxburghii Rroxscaffold_5G00348330 Rroxscaffold_5G00348340 Rroxscaffold_5G00348350 Rroxscaffold_5G00348400
rosa_rugosa Rorug04G0045400 Rorug04G0045500 Rorug04G0045600
rosa_samantha Rh4AG120800 Rh4AG121000 Rh4BG113600 Rh4BG113900 Rh4BG114000 Rh4CG128300 Rh4CG129200 Rh4CG129300 Rh4CG129400 Rh4DG113700 Rh4DG113800 Rh4DG113900
rosa_wichuraiana Rw0G001200 Rw4G009830 Rw4G009850 Rw4G009860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1176
AccB7I CCANNNNNTGG 1 cut(s) 173
AciI CCGC 5 cut(s) 213, 471, 823, 1053, 1090
AclWI GGATC 2 cut(s) 195, 692
AcsI RAATTY 4 cut(s) 31, 297, 721, 1010
AcuI CTGAAG 1 cut(s) 800
AfaI GTAC 3 cut(s) 405, 775, 1190
AfiI CCNNNNNNNGG 2 cut(s) 173, 536
AgsI TTSAA 8 cut(s) 97, 257, 505, 726, 788, 829, 929, 1138
AluBI AGCT 8 cut(s) 22, 251, 457, 784, 892, 932, 950, 1086
AluI AGCT 8 cut(s) 22, 251, 457, 784, 892, 932, 950, 1086
Alw21I GWGCWC 1 cut(s) 944
Alw26I GTCTC 3 cut(s) 114, 235, 393
AlwI GGATC 2 cut(s) 195, 692
Ama87I CYCGRG 1 cut(s) 354
AoxI GGCC 3 cut(s) 478, 648, 1164
ApeKI GCWGC 1 cut(s) 1207
ApoI RAATTY 4 cut(s) 31, 297, 721, 1010
AspS9I GGNCC 7 cut(s) 164, 479, 649, 758, 812, 850, 965
AsuC2I CCSGG 1 cut(s) 1149
AsuHPI GGTGA 1 cut(s) 512
AvaI CYCGRG 1 cut(s) 354
AvaII GGWCC 5 cut(s) 164, 758, 812, 850, 965
AxyI CCTNAGG 1 cut(s) 1161
Bbv12I GWGCWC 1 cut(s) 944
BbvCI CCTCAGC 1 cut(s) 453
BbvI GCAGC 1 cut(s) 1194
BccI CCATC 1 cut(s) 752
BceAI ACGGC 1 cut(s) 1066
BcnI CCSGG 1 cut(s) 1149
BcoDI GTCTC 3 cut(s) 114, 235, 393
BfaI CTAG 1 cut(s) 657
BfmI CTRYAG 1 cut(s) 682
BfuAI ACCTGC 1 cut(s) 1176
BglII AGATCT 1 cut(s) 1217
BisI GCNGC 1 cut(s) 1208
BlsI GCNGC 1 cut(s) 1209
Bme1390I CCNGG 1 cut(s) 1149
Bme18I GGWCC 5 cut(s) 164, 758, 812, 850, 965
BmeT110I CYCGRG 1 cut(s) 354
BmgT120I GGNCC 7 cut(s) 164, 479, 649, 758, 812, 850, 965
BmrFI CCNGG 1 cut(s) 1149
BmrI ACTGGG 2 cut(s) 99, 506
BmsI GCATC 6 cut(s) 985, 1007, 1046, 1096, 1136, 1194
BmuI ACTGGG 2 cut(s) 99, 506
BoxI GACNNNNGTC 1 cut(s) 763
BplI GAGNNNNNCTC 2 cut(s) 638, 670
Bpu10I CCTNAGC 1 cut(s) 453
BpuMI CCSGG 1 cut(s) 1149
Bsa29I ATCGAT 1 cut(s) 1104
BsaAI YACGTR 1 cut(s) 407
BsaI GGTCTC 1 cut(s) 393
BsaJI CCNNGG 3 cut(s) 846, 1048, 1148
BsaWI WCCGGW 1 cut(s) 984
Bsc4I CCNNNNNNNGG 2 cut(s) 173, 536
Bse1I ACTGG 3 cut(s) 94, 512, 541
Bse21I CCTNAGG 1 cut(s) 1161
Bse3DI GCAATG 1 cut(s) 738
BseCI ATCGAT 1 cut(s) 1104
BseDI CCNNGG 3 cut(s) 846, 1048, 1148
BseGI GGATG 4 cut(s) 791, 841, 1061, 1127
BseLI CCNNNNNNNGG 2 cut(s) 173, 536
BseMI GCAATG 1 cut(s) 738
BseMII CTCAG 4 cut(s) 419, 467, 497, 1175
BseNI ACTGG 3 cut(s) 94, 512, 541
BseXI GCAGC 1 cut(s) 1194
BsgI GTGCAG 1 cut(s) 453
BshFI GGCC 3 cut(s) 480, 650, 1166
BshVI ATCGAT 1 cut(s) 1104
BsiHKAI GWGCWC 1 cut(s) 944
BsiHKCI CYCGRG 1 cut(s) 354
BsiSI CCGG 3 cut(s) 701, 985, 1148
BslFI GGGAC 4 cut(s) 73, 451, 568, 1165
BslI CCNNNNNNNGG 2 cut(s) 173, 536
BsmAI GTCTC 3 cut(s) 114, 235, 393
BsmBI CGTCTC 1 cut(s) 114
BsmFI GGGAC 4 cut(s) 73, 451, 568, 1165
BsnI GGCC 3 cut(s) 480, 650, 1166
Bso31I GGTCTC 1 cut(s) 393
BsoBI CYCGRG 1 cut(s) 354
Bsp1286I GDGCHC 1 cut(s) 944
Bsp143I GATC 3 cut(s) 187, 697, 1217
BspACI CCGC 5 cut(s) 213, 471, 823, 1053, 1090
BspANI GGCC 3 cut(s) 480, 650, 1166
BspCNI CTCAG 4 cut(s) 420, 466, 496, 1174
BspDI ATCGAT 1 cut(s) 1104
BspMI ACCTGC 1 cut(s) 1176
BspPI GGATC 2 cut(s) 195, 692
BspTNI GGTCTC 1 cut(s) 393
BsrDI GCAATG 1 cut(s) 738
BsrI ACTGG 3 cut(s) 94, 512, 541
BssECI CCNNGG 3 cut(s) 846, 1048, 1148
BssMI GATC 3 cut(s) 187, 697, 1217
BssT1I CCWWGG 1 cut(s) 846
Bst4CI ACNGT 5 cut(s) 105, 310, 610, 686, 1027
Bst6I CTCTTC 1 cut(s) 334
BstBAI YACGTR 1 cut(s) 407
BstC8I GCNNGC 2 cut(s) 662, 1088
BstDEI CTNAG 5 cut(s) 428, 453, 467, 483, 1161
BstDSI CCRYGG 1 cut(s) 1048
BstF5I GGATG 4 cut(s) 791, 841, 1061, 1127
BstKTI GATC 3 cut(s) 190, 700, 1220
BstMAI GTCTC 3 cut(s) 114, 235, 393
BstMBI GATC 3 cut(s) 187, 697, 1217
BstMWI GCNNNNNNNGC 1 cut(s) 477
BstPAI GACNNNNGTC 1 cut(s) 763
BstSCI CCNGG 1 cut(s) 1147
BstSFI CTRYAG 1 cut(s) 682
BstV1I GCAGC 1 cut(s) 1194
BstX2I RGATCY 2 cut(s) 697, 1217
BstYI RGATCY 2 cut(s) 697, 1217
Bsu15I ATCGAT 1 cut(s) 1104
Bsu36I CCTNAGG 1 cut(s) 1161
BsuRI GGCC 3 cut(s) 480, 650, 1166
BsuTUI ATCGAT 1 cut(s) 1104
BtgI CCRYGG 1 cut(s) 1048
BtsCI GGATG 4 cut(s) 791, 841, 1061, 1127
BtsIMutI CAGTG 5 cut(s) 87, 101, 534, 691, 908
BveI ACCTGC 1 cut(s) 1176
Cac8I GCNNGC 2 cut(s) 662, 1088
Cfr13I GGNCC 7 cut(s) 164, 479, 649, 758, 812, 850, 965
ClaI ATCGAT 1 cut(s) 1104
CseI GACGC 1 cut(s) 1133
Csp6I GTAC 3 cut(s) 404, 774, 1189
CviAII CATG 5 cut(s) 63, 233, 302, 874, 1096
CviQI GTAC 3 cut(s) 404, 774, 1189
DdeI CTNAG 5 cut(s) 428, 453, 467, 483, 1161
DpnI GATC 3 cut(s) 189, 699, 1219
DpnII GATC 3 cut(s) 187, 697, 1217
Eam1104I CTCTTC 1 cut(s) 334
EarI CTCTTC 1 cut(s) 334
EciI GGCGGA 1 cut(s) 1068
Eco130I CCWWGG 1 cut(s) 846
Eco31I GGTCTC 1 cut(s) 393
Eco47I GGWCC 5 cut(s) 164, 758, 812, 850, 965
Eco57I CTGAAG 1 cut(s) 800
Eco81I CCTNAGG 1 cut(s) 1161
Eco88I CYCGRG 1 cut(s) 354
EcoO109I RGGNCCY 2 cut(s) 649, 758
EcoRI GAATTC 2 cut(s) 31, 297
EcoT14I CCWWGG 1 cut(s) 846
EcoT22I ATGCAT 1 cut(s) 1000
ErhI CCWWGG 1 cut(s) 846
Esp3I CGTCTC 1 cut(s) 114
FaeI CATG 5 cut(s) 66, 236, 305, 877, 1099
FalI AAGNNNNNCTT 1 cut(s) 1207
FaqI GGGAC 4 cut(s) 73, 451, 568, 1165
FatI CATG 5 cut(s) 62, 232, 301, 873, 1095
FauI CCCGC 1 cut(s) 1083
Fnu4HI GCNGC 1 cut(s) 1208
FokI GGATG 4 cut(s) 778, 828, 1068, 1114
Fsp4HI GCNGC 1 cut(s) 1208
FspBI CTAG 1 cut(s) 657
GluI GCNGC 1 cut(s) 1208
HaeIII GGCC 3 cut(s) 480, 650, 1166
HapII CCGG 3 cut(s) 701, 985, 1148
HgaI GACGC 1 cut(s) 1133
Hin1II CATG 5 cut(s) 66, 236, 305, 877, 1099
HincII GTYRAC 1 cut(s) 1123
HindII GTYRAC 1 cut(s) 1123
HindIII AAGCTT 4 cut(s) 782, 930, 948, 1084
HinfI GANTC 6 cut(s) 177, 338, 374, 448, 735, 1101
HpaII CCGG 3 cut(s) 701, 985, 1148
HphI GGTGA 1 cut(s) 512
Hpy166II GTNNAC 2 cut(s) 520, 1123
Hpy188I TCNGA 4 cut(s) 429, 780, 799, 1067
Hpy188III TCNNGA 4 cut(s) 47, 313, 695, 1019
Hpy8I GTNNAC 2 cut(s) 520, 1123
Hpy99I CGWCG 1 cut(s) 940
HpyAV CCTTC 1 cut(s) 231
HpyCH4III ACNGT 5 cut(s) 105, 310, 610, 686, 1027
HpyCH4IV ACGT 1 cut(s) 406
HpyCH4V TGCA 4 cut(s) 434, 839, 998, 1210
HpyF10VI GCNNNNNNNGC 1 cut(s) 477
HpyF3I CTNAG 5 cut(s) 428, 453, 467, 483, 1161
HpySE526I ACGT 1 cut(s) 406
Hsp92II CATG 5 cut(s) 66, 236, 305, 877, 1099
Kzo9I GATC 3 cut(s) 187, 697, 1217
LmnI GCTCC 2 cut(s) 248, 889
Lsp1109I GCAGC 1 cut(s) 1194
LweI GCATC 6 cut(s) 985, 1007, 1046, 1096, 1136, 1194
MaeI CTAG 1 cut(s) 657
MaeII ACGT 1 cut(s) 406
MaeIII GTNAC 1 cut(s) 906
MalI GATC 3 cut(s) 189, 699, 1219
MboI GATC 3 cut(s) 187, 697, 1217
MboII GAAGA 5 cut(s) 316, 321, 889, 892, 1212
MfeI CAATTG 1 cut(s) 441
MflI RGATCY 2 cut(s) 697, 1217
MhlI GDGCHC 1 cut(s) 944
MlyI GAGTC 2 cut(s) 457, 729
MmeI TCCRAC 3 cut(s) 129, 992, 1045
Mph1103I ATGCAT 1 cut(s) 1000
MseI TTAA 9 cut(s) 41, 53, 195, 264, 573, 896, 921, 1200, 1225
MslI CAYNNNNRTG 2 cut(s) 1172, 1202
MspI CCGG 3 cut(s) 701, 985, 1148
MspR9I CCNGG 1 cut(s) 1149
MunI CAATTG 1 cut(s) 441
MwoI GCNNNNNNNGC 1 cut(s) 477
NciI CCSGG 1 cut(s) 1149
NdeII GATC 3 cut(s) 187, 697, 1217
NlaIII CATG 5 cut(s) 66, 236, 305, 877, 1099
NmuCI GTSAC 1 cut(s) 906
NsiI ATGCAT 1 cut(s) 1000
PaeR7I CTCGAG 1 cut(s) 354
PcsI WCGNNNNNNNCGW 1 cut(s) 627
PfeI GAWTC 4 cut(s) 177, 338, 374, 1101
PflMI CCANNNNNTGG 1 cut(s) 173
PkrI GCNGC 1 cut(s) 1209
PleI GAGTC 2 cut(s) 456, 729
PpsI GAGTC 2 cut(s) 456, 729
Ppu21I YACGTR 1 cut(s) 407
PpuMI RGGWCCY 1 cut(s) 758
PshAI GACNNNNGTC 1 cut(s) 763
Psp5II RGGWCCY 1 cut(s) 758
PspPI GGNCC 7 cut(s) 164, 479, 649, 758, 812, 850, 965
PspPPI RGGWCCY 1 cut(s) 758
PspXI VCTCGAGB 1 cut(s) 354
PsuI RGATCY 2 cut(s) 697, 1217
RsaI GTAC 3 cut(s) 405, 775, 1190
RsaNI GTAC 3 cut(s) 404, 774, 1189
RseI CAYNNNNRTG 2 cut(s) 1172, 1202
SaqAI TTAA 9 cut(s) 41, 53, 195, 264, 573, 896, 921, 1200, 1225
SatI GCNGC 1 cut(s) 1208
Sau3AI GATC 3 cut(s) 187, 697, 1217
Sau96I GGNCC 7 cut(s) 164, 479, 649, 758, 812, 850, 965
SchI GAGTC 2 cut(s) 457, 729
ScrFI CCNGG 1 cut(s) 1149
SduI GDGCHC 1 cut(s) 944
SfaNI GCATC 6 cut(s) 985, 1007, 1046, 1096, 1136, 1194
SfcI CTRYAG 1 cut(s) 682
Sfr274I CTCGAG 1 cut(s) 354
SinI GGWCC 5 cut(s) 164, 758, 812, 850, 965
SlaI CTCGAG 1 cut(s) 354
SmiMI CAYNNNNRTG 2 cut(s) 1172, 1202
SmlI CTYRAG 1 cut(s) 354
SmoI CTYRAG 1 cut(s) 354
SsiI CCGC 5 cut(s) 213, 471, 823, 1053, 1090
SspMI CTAG 1 cut(s) 657
StyD4I CCNGG 1 cut(s) 1147
StyI CCWWGG 1 cut(s) 846
TaaI ACNGT 5 cut(s) 105, 310, 610, 686, 1027
TaiI ACGT 1 cut(s) 409
TaqI TCGA 5 cut(s) 312, 355, 938, 1077, 1104
TfiI GAWTC 4 cut(s) 177, 338, 374, 1101
Tru1I TTAA 9 cut(s) 41, 53, 195, 264, 573, 896, 921, 1200, 1225
Tru9I TTAA 9 cut(s) 41, 53, 195, 264, 573, 896, 921, 1200, 1225
TscAI CASTG 5 cut(s) 94, 108, 541, 691, 915
TseFI GTSAC 1 cut(s) 906
TseI GCWGC 1 cut(s) 1207
Tsp45I GTSAC 1 cut(s) 906
TspDTI ATGAA 4 cut(s) 290, 559, 890, 995
TspGWI ACGGA 1 cut(s) 261
TspRI CASTG 5 cut(s) 94, 108, 541, 691, 915
Van91I CCANNNNNTGG 1 cut(s) 173
VpaK11BI GGWCC 5 cut(s) 164, 758, 812, 850, 965
XapI RAATTY 4 cut(s) 31, 297, 721, 1010
XcmI CCANNNNNNNNNTGG 1 cut(s) 533
XhoI CTCGAG 1 cut(s) 354
XspI CTAG 1 cut(s) 657
Zsp2I ATGCAT 1 cut(s) 1000
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.