RLG00000008959

(R)-mandelonitrile lyase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Forward (+)
43820709 .. 43822477
1769 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008959

Sequence Viewer

Length: 1278 bp
ATGTATAATTATGGGATTATATATCGATTTTTATTTGTGTTAAAAATCAGGGGCGTGACACTCATGCAAGAAGATGATGGTAAGACCACACCAGTTCAAAAATTCAAGTCAGAAGATGGTGTTGCTAATGTCAGAGGAAGCGTTCTTGGTGGCTCAAGCATGATCAATGCTGGTTTCTACTCCAAAGCTGATAGAGAATTCTTTGTTAAATCTGGAATTAAATGGGACATGGACTTGGTTGATAAGGCATATCACTGGGTTGAAAACATTGTCGTCTCTCGCCCAAATTTGTCATGTACAAATTGGCAATCTGTTGTGAAAGAAGCATTGTTGGAGGTTGGTGTTGGTCCAAACAATGGATTAAGTTTGGATCACATTAAGGAACTAAAGAGACATGGAGCTGTTGAATTGCTTAACAGAGGAAACGTAAAGAACTTGGGAGTAGGAATTCATGCCACAGTGGAGAAGATCATCTTCTCTTCCAAAGGATCAAGTATTTCGGCTCGAGGGGTGATATATACTAATTCGAATGGGAGGTCTCATAGGGCATTTGTACGTGGTGAAGGAGAGGTTATTCTGAGTGCAGGGGCAATTGGGAGTCCTCAGTTTCTACTTCTTAGTGGTGTTGGCCCTCAATCCTATCTATCATCTTTGAAAATCCCAGTTGTTCACCCCCAACCTCACACTGGAAACTTTATGTATGACAATCCTCGTAATTTCATTACCATTTTGTCCCTGTTTCCACTACAGGCCTCAACTGTAAAGATTGTCGGCATTACCGACCATTTTTATGTAGAGACCTTCTCTAGCATGCCCATTTCTACTACACCCTATAGACTCATTTTCATCAAATTGGTAAGACCTTTGTCTTATGGTACTCTGAAGCTTCAATCATCATCTGATGTGAGAGTTGGTCCAAATGTCCGCTTCAATTATGCACATCCCTTGGACCTTGCTCGCTGTGTTTCTGGCATGAAGAAGATTGGGGAGTTATTAAATACCAAGTCACTGAAAGAGTTTTATGGTCCAACTTTACCTATAAACCAAACAGATGATGCATCTTTTGGAGAATTCTGTCGTGATACAGTATCAACAATTTGGCATTTCCACGGCGGATGCCTCGTCGGAAAGGTGGTCGATAGCAGCTTGCAGGTTATGGGAATCGATGCTTTCCGTGTTGTTGACGCATCCACATTCAATTTCACACCGGGGACAAATCCACAGGCCACGCTTATGATGTTCGGTAGGTACATTGGCATTAAGATGCTGCAACAATGA

Protein Analysis

426

Amino Acids

46.89

Weight (kDa)

9.37

Isoelectric Point (pI)

24.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GMC_oxred_N PF00732 44 - 213 2.9e-12 GMC oxidoreductase
GMC_oxred_C PF05199 288 - 415 5.3e-22 GMC oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000533)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g08950 FvH4_6g09340
malus_domestica MD00G1012800.v1.1 MD00G1012900.v1.1 MD00G1013000.v1.1 MD00G1013300.v1.1 MD03G1090900.v1.1 MD03G1091100.v1.1 MD03G1091300.v1.1 MD03G1091400.v1.1 MD03G1091700.v1.1 MD03G1091900.v1.1 MD10G1279300.v1.1 MD13G1264000.v1.1 MD13G1264100.v1.1 MD13G1264200.v1.1 MD13G1264500.v1.1 MD16G1093000.v1.1 MD16G1093100.v1.1 MD16G1265300.v1.1 MD16G1265500.v1.1
prunus_persica Prupe.1G007400_v2.0.a1 Prupe.1G092200_v2.0.a1 Prupe.1G092300_v2.0.a1 Prupe.1G092400_v2.0.a1 Prupe.1G092500_v2.0.a1 Prupe.1G092700_v2.0.a1 Prupe.1G092900_v2.0.a1 Prupe.1G093000_v2.0.a1 Prupe.1G093200_v2.0.a1 Prupe.1G093300_v2.0.a1 Prupe.1G093500_v2.0.a1 Prupe.1G093600_v2.0.a1 Prupe.1G093600_v2.0.a1 Prupe.1G093600_v2.0.a1 Prupe.1G093700_v2.0.a1 Prupe.1G093800_v2.0.a1 Prupe.1G093800_v2.0.a1 Prupe.1G096400_v2.0.a1 Prupe.1G096500_v2.0.a1 Prupe.1G096500_v2.0.a1
pyrus_communis pycom03g07290 pycom03g07320 pycom10g23300 pycom11g08780 pycom11g08790 pycom11g08810 pycom11g08820 pycom13g23800
rosa_chinensis RchiOBHm_Chr4g0403711 RchiOBHm_Chr4g0403741 RchiOBHm_Chr4g0403781
rosa_laevigata RLG00000008950 RLG00000008955 RLG00000008957 RLG00000008959
rosa_multiflora Rmu_co8470309.1_g000001 Rmu_sc0001496.1_g000015 Rmu_sc0004115.1_g000016 Rmu_sc0004388.1_g000007 Rmu_sc0007461.1_g000001 Rmu_sc0010412.1_g000002
rosa_roxburghii Rroxscaffold_5G00348330 Rroxscaffold_5G00348340 Rroxscaffold_5G00348350 Rroxscaffold_5G00348400
rosa_rugosa Rorug04G0045400 Rorug04G0045500 Rorug04G0045600
rosa_samantha Rh4AG120800 Rh4AG121000 Rh4BG113600 Rh4BG113900 Rh4BG114000 Rh4CG128300 Rh4CG129200 Rh4CG129300 Rh4CG129400 Rh4DG113700 Rh4DG113800 Rh4DG113900
rosa_wichuraiana Rw0G001200 Rw4G009830 Rw4G009850 Rw4G009860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1141
AccB7I CCANNNNNTGG 1 cut(s) 356
AciI CCGC 2 cut(s) 925, 1113
AclWI GGATC 2 cut(s) 378, 496
AcsI RAATTY 5 cut(s) 101, 197, 286, 447, 1070
AcuI CTGAAG 1 cut(s) 902
AfaI GTAC 4 cut(s) 298, 555, 877, 1250
AfiI CCNNNNNNNGG 2 cut(s) 356, 686
AgsI TTSAA 8 cut(s) 98, 106, 263, 407, 655, 890, 931, 1198
AluBI AGCT 4 cut(s) 188, 401, 886, 1146
AluI AGCT 4 cut(s) 188, 401, 886, 1146
Alw26I GTCTC 4 cut(s) 280, 385, 543, 791
AlwI GGATC 2 cut(s) 378, 496
Ama87I CYCGRG 1 cut(s) 504
AoxI GGCC 3 cut(s) 628, 750, 1224
ApeKI GCWGC 2 cut(s) 1143, 1267
ApoI RAATTY 5 cut(s) 101, 197, 286, 447, 1070
ArsI GACNNNNNNTTYG 2 cut(s) 521, 553
AspS9I GGNCC 5 cut(s) 347, 629, 914, 949, 1025
AsuC2I CCSGG 1 cut(s) 1209
AsuHPI GGTGA 3 cut(s) 523, 572, 662
AsuII TTCGAA 1 cut(s) 527
AvaI CYCGRG 1 cut(s) 504
AvaII GGWCC 4 cut(s) 347, 914, 949, 1025
BbvI GCAGC 2 cut(s) 1155, 1254
BccI CCATC 2 cut(s) 71, 110
BceAI ACGGC 1 cut(s) 1126
BclI TGATCA 1 cut(s) 162
BcnI CCSGG 1 cut(s) 1209
BcoDI GTCTC 4 cut(s) 280, 385, 543, 791
BfaI CTAG 1 cut(s) 807
BfmI CTRYAG 2 cut(s) 746, 832
BfuAI ACCTGC 1 cut(s) 1141
BisI GCNGC 2 cut(s) 1144, 1268
BlsI GCNGC 2 cut(s) 1145, 1269
Bme1390I CCNGG 1 cut(s) 1209
Bme18I GGWCC 4 cut(s) 347, 914, 949, 1025
BmeT110I CYCGRG 1 cut(s) 504
BmgT120I GGNCC 5 cut(s) 347, 629, 914, 949, 1025
BmrFI CCNGG 1 cut(s) 1209
BmrI ACTGGG 2 cut(s) 265, 656
BmsI GCATC 6 cut(s) 1045, 1067, 1106, 1156, 1196, 1254
BmuI ACTGGG 2 cut(s) 265, 656
BoxI GACNNNNGTC 1 cut(s) 865
BplI GAGNNNNNCTC 2 cut(s) 788, 820
Bpu14I TTCGAA 1 cut(s) 527
BpuEI CTTGAG 1 cut(s) 139
BpuMI CCSGG 1 cut(s) 1209
Bsa29I ATCGAT 2 cut(s) 25, 1164
BsaAI YACGTR 1 cut(s) 557
BsaI GGTCTC 2 cut(s) 543, 791
BsaJI CCNNGG 3 cut(s) 945, 1108, 1208
Bsc4I CCNNNNNNNGG 2 cut(s) 356, 686
Bse1I ACTGG 4 cut(s) 92, 260, 662, 691
BseCI ATCGAT 2 cut(s) 25, 1164
BseDI CCNNGG 3 cut(s) 945, 1108, 1208
BseGI GGATG 3 cut(s) 940, 1121, 1187
BseLI CCNNNNNNNGG 2 cut(s) 356, 686
BseMII CTCAG 2 cut(s) 569, 617
BseNI ACTGG 4 cut(s) 92, 260, 662, 691
BseXI GCAGC 2 cut(s) 1155, 1254
BsgI GTGCAG 1 cut(s) 603
BshFI GGCC 3 cut(s) 630, 752, 1226
BshVI ATCGAT 2 cut(s) 25, 1164
BsiHKCI CYCGRG 1 cut(s) 504
BsiSI CCGG 1 cut(s) 1208
BslFI GGGAC 3 cut(s) 239, 718, 1225
BslI CCNNNNNNNGG 2 cut(s) 356, 686
BsmAI GTCTC 4 cut(s) 280, 385, 543, 791
BsmBI CGTCTC 1 cut(s) 280
BsmFI GGGAC 3 cut(s) 239, 718, 1225
BsnI GGCC 3 cut(s) 630, 752, 1226
Bso31I GGTCTC 2 cut(s) 543, 791
BsoBI CYCGRG 1 cut(s) 504
Bsp119I TTCGAA 1 cut(s) 527
Bsp1407I TGTACA 1 cut(s) 296
Bsp143I GATC 4 cut(s) 162, 370, 468, 488
BspACI CCGC 2 cut(s) 925, 1113
BspANI GGCC 3 cut(s) 630, 752, 1226
BspCNI CTCAG 2 cut(s) 570, 616
BspDI ATCGAT 2 cut(s) 25, 1164
BspMI ACCTGC 1 cut(s) 1141
BspPI GGATC 2 cut(s) 378, 496
BspT104I TTCGAA 1 cut(s) 527
BspTNI GGTCTC 2 cut(s) 543, 791
BsrGI TGTACA 1 cut(s) 296
BsrI ACTGG 4 cut(s) 92, 260, 662, 691
BssECI CCNNGG 3 cut(s) 945, 1108, 1208
BssMI GATC 4 cut(s) 162, 370, 468, 488
BssT1I CCWWGG 1 cut(s) 945
Bst4CI ACNGT 3 cut(s) 460, 760, 1087
Bst6I CTCTTC 1 cut(s) 484
BstAUI TGTACA 1 cut(s) 296
BstBAI YACGTR 1 cut(s) 557
BstBI TTCGAA 1 cut(s) 527
BstC8I GCNNGC 3 cut(s) 812, 958, 1148
BstDEI CTNAG 3 cut(s) 578, 603, 617
BstDSI CCRYGG 1 cut(s) 1108
BstF5I GGATG 3 cut(s) 940, 1121, 1187
BstKTI GATC 4 cut(s) 165, 373, 471, 491
BstMAI GTCTC 4 cut(s) 280, 385, 543, 791
BstMBI GATC 4 cut(s) 162, 370, 468, 488
BstNSI RCATGY 1 cut(s) 814
BstPAI GACNNNNGTC 1 cut(s) 865
BstSCI CCNGG 1 cut(s) 1207
BstSFI CTRYAG 2 cut(s) 746, 832
BstV1I GCAGC 2 cut(s) 1155, 1254
Bsu15I ATCGAT 2 cut(s) 25, 1164
BsuRI GGCC 3 cut(s) 630, 752, 1226
BsuTUI ATCGAT 2 cut(s) 25, 1164
BtgI CCRYGG 1 cut(s) 1108
BtsCI GGATG 3 cut(s) 940, 1121, 1187
BtsIMutI CAGTG 4 cut(s) 253, 465, 684, 1007
BveI ACCTGC 1 cut(s) 1141
Cac8I GCNNGC 3 cut(s) 812, 958, 1148
Cfr13I GGNCC 5 cut(s) 347, 629, 914, 949, 1025
ClaI ATCGAT 2 cut(s) 25, 1164
CseI GACGC 1 cut(s) 1193
Csp6I GTAC 4 cut(s) 297, 554, 876, 1249
CviAII CATG 8 cut(s) 64, 160, 229, 294, 395, 452, 811, 973
CviJI RGCY 9 cut(s) 153, 188, 401, 503, 630, 752, 886, 1146, 1226
CviKI_1 RGCY 9 cut(s) 153, 188, 401, 503, 630, 752, 886, 1146, 1226
CviQI GTAC 4 cut(s) 297, 554, 876, 1249
DdeI CTNAG 3 cut(s) 578, 603, 617
DpnI GATC 4 cut(s) 164, 372, 470, 490
DpnII GATC 4 cut(s) 162, 370, 468, 488
Eam1104I CTCTTC 1 cut(s) 484
EarI CTCTTC 1 cut(s) 484
EciI GGCGGA 1 cut(s) 1128
Eco130I CCWWGG 1 cut(s) 945
Eco147I AGGCCT 1 cut(s) 752
Eco31I GGTCTC 2 cut(s) 543, 791
Eco47I GGWCC 4 cut(s) 347, 914, 949, 1025
Eco57I CTGAAG 1 cut(s) 902
Eco88I CYCGRG 1 cut(s) 504
EcoRI GAATTC 3 cut(s) 197, 447, 1070
EcoT14I CCWWGG 1 cut(s) 945
EcoT22I ATGCAT 1 cut(s) 1060
ErhI CCWWGG 1 cut(s) 945
Esp3I CGTCTC 1 cut(s) 280
FaeI CATG 8 cut(s) 67, 163, 232, 297, 398, 455, 814, 976
FalI AAGNNNNNCTT 2 cut(s) 458, 490
FaqI GGGAC 3 cut(s) 239, 718, 1225
FatI CATG 8 cut(s) 63, 159, 228, 293, 394, 451, 810, 972
FbaI TGATCA 1 cut(s) 162
Fnu4HI GCNGC 2 cut(s) 1144, 1268
FokI GGATG 3 cut(s) 927, 1128, 1174
Fsp4HI GCNGC 2 cut(s) 1144, 1268
FspBI CTAG 1 cut(s) 807
GluI GCNGC 2 cut(s) 1144, 1268
HaeIII GGCC 3 cut(s) 630, 752, 1226
HapII CCGG 1 cut(s) 1208
HgaI GACGC 1 cut(s) 1193
Hin1II CATG 8 cut(s) 67, 163, 232, 297, 398, 455, 814, 976
HincII GTYRAC 1 cut(s) 1183
HindII GTYRAC 1 cut(s) 1183
HindIII AAGCTT 1 cut(s) 884
HinfI GANTC 3 cut(s) 598, 837, 1161
HpaII CCGG 1 cut(s) 1208
HphI GGTGA 3 cut(s) 523, 572, 662
Hpy166II GTNNAC 2 cut(s) 670, 1183
Hpy188I TCNGA 6 cut(s) 112, 134, 579, 882, 901, 1127
Hpy188III TCNNGA 2 cut(s) 213, 1079
Hpy8I GTNNAC 2 cut(s) 670, 1183
Hpy99I CGWCG 1 cut(s) 1127
HpyAV CCTTC 2 cut(s) 557, 811
HpyCH4III ACNGT 3 cut(s) 460, 760, 1087
HpyCH4IV ACGT 2 cut(s) 426, 556
HpyCH4V TGCA 6 cut(s) 67, 584, 938, 1058, 1150, 1270
HpyF3I CTNAG 3 cut(s) 578, 603, 617
HpySE526I ACGT 2 cut(s) 426, 556
Hsp92II CATG 8 cut(s) 67, 163, 232, 297, 398, 455, 814, 976
Ksp22I TGATCA 1 cut(s) 162
Kzo9I GATC 4 cut(s) 162, 370, 468, 488
LmnI GCTCC 1 cut(s) 398
Lsp1109I GCAGC 2 cut(s) 1155, 1254
LweI GCATC 6 cut(s) 1045, 1067, 1106, 1156, 1196, 1254
MaeI CTAG 1 cut(s) 807
MaeII ACGT 2 cut(s) 426, 556
MaeIII GTNAC 2 cut(s) 55, 1005
MalI GATC 4 cut(s) 164, 372, 470, 490
MboI GATC 4 cut(s) 162, 370, 468, 488
MboII GAAGA 7 cut(s) 83, 125, 466, 471, 478, 988, 991
MfeI CAATTG 1 cut(s) 591
MlyI GAGTC 2 cut(s) 607, 831
MmeI TCCRAC 3 cut(s) 312, 1052, 1105
Mph1103I ATGCAT 1 cut(s) 1060
MseI TTAA 8 cut(s) 41, 207, 219, 362, 378, 414, 995, 1260
MslI CAYNNNNRTG 3 cut(s) 789, 1232, 1262
MspI CCGG 1 cut(s) 1208
MspR9I CCNGG 1 cut(s) 1209
MunI CAATTG 1 cut(s) 591
NciI CCSGG 1 cut(s) 1209
NdeII GATC 4 cut(s) 162, 370, 468, 488
NlaIII CATG 8 cut(s) 67, 163, 232, 297, 398, 455, 814, 976
NmuCI GTSAC 2 cut(s) 55, 1005
NsiI ATGCAT 1 cut(s) 1060
NspI RCATGY 1 cut(s) 814
NspV TTCGAA 1 cut(s) 527
PaeI GCATGC 1 cut(s) 814
PaeR7I CTCGAG 1 cut(s) 504
PceI AGGCCT 1 cut(s) 752
PcsI WCGNNNNNNNCGW 1 cut(s) 777
PfeI GAWTC 1 cut(s) 1161
PflMI CCANNNNNTGG 1 cut(s) 356
PkrI GCNGC 2 cut(s) 1145, 1269
PleI GAGTC 2 cut(s) 606, 831
PpsI GAGTC 2 cut(s) 606, 831
Ppu21I YACGTR 1 cut(s) 557
PshAI GACNNNNGTC 1 cut(s) 865
PspPI GGNCC 5 cut(s) 347, 629, 914, 949, 1025
PspXI VCTCGAGB 1 cut(s) 504
RsaI GTAC 4 cut(s) 298, 555, 877, 1250
RsaNI GTAC 4 cut(s) 297, 554, 876, 1249
RseI CAYNNNNRTG 3 cut(s) 789, 1232, 1262
SaqAI TTAA 8 cut(s) 41, 207, 219, 362, 378, 414, 995, 1260
SatI GCNGC 2 cut(s) 1144, 1268
Sau3AI GATC 4 cut(s) 162, 370, 468, 488
Sau96I GGNCC 5 cut(s) 347, 629, 914, 949, 1025
SchI GAGTC 2 cut(s) 607, 831
ScrFI CCNGG 1 cut(s) 1209
SfaNI GCATC 6 cut(s) 1045, 1067, 1106, 1156, 1196, 1254
SfcI CTRYAG 2 cut(s) 746, 832
Sfr274I CTCGAG 1 cut(s) 504
SfuI TTCGAA 1 cut(s) 527
SinI GGWCC 4 cut(s) 347, 914, 949, 1025
SlaI CTCGAG 1 cut(s) 504
SmiMI CAYNNNNRTG 3 cut(s) 789, 1232, 1262
SmlI CTYRAG 2 cut(s) 154, 504
SmoI CTYRAG 2 cut(s) 154, 504
SphI GCATGC 1 cut(s) 814
SseBI AGGCCT 1 cut(s) 752
SsiI CCGC 2 cut(s) 925, 1113
SspMI CTAG 1 cut(s) 807
StuI AGGCCT 1 cut(s) 752
StyD4I CCNGG 1 cut(s) 1207
StyI CCWWGG 1 cut(s) 945
TaaI ACNGT 3 cut(s) 460, 760, 1087
TaiI ACGT 2 cut(s) 429, 559
TaqI TCGA 5 cut(s) 25, 505, 527, 1137, 1164
TatI WGTACW 1 cut(s) 296
TfiI GAWTC 1 cut(s) 1161
Tru1I TTAA 8 cut(s) 41, 207, 219, 362, 378, 414, 995, 1260
Tru9I TTAA 8 cut(s) 41, 207, 219, 362, 378, 414, 995, 1260
TscAI CASTG 4 cut(s) 260, 465, 691, 1014
TseFI GTSAC 2 cut(s) 55, 1005
TseI GCWGC 2 cut(s) 1143, 1267
Tsp45I GTSAC 2 cut(s) 55, 1005
TspDTI ATGAA 4 cut(s) 440, 709, 835, 989
TspGWI ACGGA 1 cut(s) 1163
TspRI CASTG 4 cut(s) 260, 465, 691, 1014
Van91I CCANNNNNTGG 1 cut(s) 356
VpaK11BI GGWCC 4 cut(s) 347, 914, 949, 1025
XapI RAATTY 5 cut(s) 101, 197, 286, 447, 1070
XceI RCATGY 1 cut(s) 814
XcmI CCANNNNNNNNNTGG 1 cut(s) 683
XhoI CTCGAG 1 cut(s) 504
XspI CTAG 1 cut(s) 807
Zsp2I ATGCAT 1 cut(s) 1060
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.