MD16G1093100.v1.1

(R)-mandelonitrile lyase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Reverse (-)
6423485 .. 6424570
1086 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1093100.v1.1.491

Sequence Viewer

Length: 378 bp
ATGCAAAATGAGTCGTTTGGCTATAGAAAACAAACGTTTCTGTTTGGTCTAAGTGACGATAGAGCATTCGAAAACATAGGGAAATCAATAATGTCAGCAATATCATCGGTGTTGCTCCTTCTTGTCCTCTATCTCCAATCAGAGGTTCATTCGTTGGCCACCCCTTCTGATCATGATTTTAGCTACTTGAAATTCGTACGCAATGCCACTGATTTTTCATTGGAAGATGAATATGACTACATCATAGTTGGAGGGGGCACATCAGGGTGTCCATTGGCAGCAACTTTATCAGCAAACTACTCAGTGCTCGTTCTAGAAAGGGGAAAGTCTTCCTACATCATATCCGAACGTCTTGACCCAAGACGGATTTGCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

126

Amino Acids

13.96

Weight (kDa)

5.04

Isoelectric Point (pI)

37.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000533)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g08950 FvH4_6g09340
malus_domestica MD00G1012800.v1.1 MD00G1012900.v1.1 MD00G1013000.v1.1 MD00G1013300.v1.1 MD03G1090900.v1.1 MD03G1091100.v1.1 MD03G1091300.v1.1 MD03G1091400.v1.1 MD03G1091700.v1.1 MD03G1091900.v1.1 MD10G1279300.v1.1 MD13G1264000.v1.1 MD13G1264100.v1.1 MD13G1264200.v1.1 MD13G1264500.v1.1 MD16G1093000.v1.1 MD16G1093100.v1.1 MD16G1265300.v1.1 MD16G1265500.v1.1
prunus_persica Prupe.1G007400_v2.0.a1 Prupe.1G092200_v2.0.a1 Prupe.1G092300_v2.0.a1 Prupe.1G092400_v2.0.a1 Prupe.1G092500_v2.0.a1 Prupe.1G092700_v2.0.a1 Prupe.1G092900_v2.0.a1 Prupe.1G093000_v2.0.a1 Prupe.1G093200_v2.0.a1 Prupe.1G093300_v2.0.a1 Prupe.1G093500_v2.0.a1 Prupe.1G093600_v2.0.a1 Prupe.1G093600_v2.0.a1 Prupe.1G093600_v2.0.a1 Prupe.1G093700_v2.0.a1 Prupe.1G093800_v2.0.a1 Prupe.1G093800_v2.0.a1 Prupe.1G096400_v2.0.a1 Prupe.1G096500_v2.0.a1 Prupe.1G096500_v2.0.a1
pyrus_communis pycom03g07290 pycom03g07320 pycom10g23300 pycom11g08780 pycom11g08790 pycom11g08810 pycom11g08820 pycom13g23800
rosa_chinensis RchiOBHm_Chr4g0403711 RchiOBHm_Chr4g0403741 RchiOBHm_Chr4g0403781
rosa_laevigata RLG00000008950 RLG00000008955 RLG00000008957 RLG00000008959
rosa_multiflora Rmu_co8470309.1_g000001 Rmu_sc0001496.1_g000015 Rmu_sc0004115.1_g000016 Rmu_sc0004388.1_g000007 Rmu_sc0007461.1_g000001 Rmu_sc0010412.1_g000002
rosa_roxburghii Rroxscaffold_5G00348330 Rroxscaffold_5G00348340 Rroxscaffold_5G00348350 Rroxscaffold_5G00348400
rosa_rugosa Rorug04G0045400 Rorug04G0045500 Rorug04G0045600
rosa_samantha Rh4AG120800 Rh4AG121000 Rh4BG113600 Rh4BG113900 Rh4BG114000 Rh4CG128300 Rh4CG129200 Rh4CG129300 Rh4CG129400 Rh4DG113700 Rh4DG113800 Rh4DG113900
rosa_wichuraiana Rw0G001200 Rw4G009830 Rw4G009850 Rw4G009860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 35
AcoI YGGCCR 1 cut(s) 156
AcsI RAATTY 1 cut(s) 191
AfaI GTAC 1 cut(s) 198
AfiI CCNNNNNNNGG 1 cut(s) 142
AgsI TTSAA 1 cut(s) 190
AjuI GAANNNNNNNTTGG 2 cut(s) 129, 161
AluBI AGCT 1 cut(s) 183
AluI AGCT 1 cut(s) 183
Alw21I GWGCWC 1 cut(s) 309
AoxI GGCC 1 cut(s) 156
ApeKI GCWGC 1 cut(s) 278
ApoI RAATTY 1 cut(s) 191
Asp700I GAANNNNTTC 1 cut(s) 328
AsuII TTCGAA 1 cut(s) 69
BaeGI GKGCMC 1 cut(s) 260
BalI TGGCCA 1 cut(s) 158
BbsI GAAGAC 1 cut(s) 321
Bbv12I GWGCWC 1 cut(s) 309
BbvI GCAGC 1 cut(s) 290
BcgI CGANNNNNNTGC 2 cut(s) 87, 121
BclI TGATCA 1 cut(s) 169
BfaI CTAG 1 cut(s) 314
BfmI CTRYAG 1 cut(s) 22
BisI GCNGC 1 cut(s) 279
BlsI GCNGC 1 cut(s) 280
BpiI GAAGAC 1 cut(s) 321
Bpu14I TTCGAA 1 cut(s) 69
Bsc4I CCNNNNNNNGG 1 cut(s) 142
Bse3DI GCAATG 1 cut(s) 208
BseLI CCNNNNNNNGG 1 cut(s) 142
BseMI GCAATG 1 cut(s) 208
BseMII CTCAG 1 cut(s) 315
BseSI GKGCMC 1 cut(s) 260
BseXI GCAGC 1 cut(s) 290
BshFI GGCC 1 cut(s) 158
BsiHKAI GWGCWC 1 cut(s) 309
BsiWI CGTACG 1 cut(s) 196
BslI CCNNNNNNNGG 1 cut(s) 142
BsmI GAATGC 1 cut(s) 65
BsnI GGCC 1 cut(s) 158
Bsp119I TTCGAA 1 cut(s) 69
Bsp1286I GDGCHC 2 cut(s) 260, 309
Bsp143I GATC 1 cut(s) 169
BspANI GGCC 1 cut(s) 158
BspCNI CTCAG 1 cut(s) 314
BspHI TCATGA 1 cut(s) 172
BspT104I TTCGAA 1 cut(s) 69
BsrDI GCAATG 1 cut(s) 208
BssMI GATC 1 cut(s) 169
BstBI TTCGAA 1 cut(s) 69
BstDEI CTNAG 2 cut(s) 50, 301
BstKTI GATC 1 cut(s) 172
BstMBI GATC 1 cut(s) 169
BstSFI CTRYAG 1 cut(s) 22
BstSLI GKGCMC 1 cut(s) 260
BstV1I GCAGC 1 cut(s) 290
BstV2I GAAGAC 1 cut(s) 321
BsuRI GGCC 1 cut(s) 158
BtsIMutI CAGTG 2 cut(s) 207, 309
CciI TCATGA 1 cut(s) 172
Csp6I GTAC 1 cut(s) 197
CviAII CATG 1 cut(s) 173
CviJI RGCY 3 cut(s) 21, 158, 183
CviKI_1 RGCY 3 cut(s) 21, 158, 183
CviQI GTAC 1 cut(s) 197
DdeI CTNAG 2 cut(s) 50, 301
DpnI GATC 1 cut(s) 171
DpnII GATC 1 cut(s) 169
EaeI YGGCCR 1 cut(s) 156
FaeI CATG 1 cut(s) 176
FaiI YATR 8 cut(s) 24, 77, 174, 234, 245, 341, 374, 376
FatI CATG 1 cut(s) 172
FbaI TGATCA 1 cut(s) 169
Fnu4HI GCNGC 1 cut(s) 279
Fsp4HI GCNGC 1 cut(s) 279
FspBI CTAG 1 cut(s) 314
GluI GCNGC 1 cut(s) 279
HaeIII GGCC 1 cut(s) 158
Hin1II CATG 1 cut(s) 176
HinfI GANTC 1 cut(s) 11
Hpy188I TCNGA 3 cut(s) 142, 169, 346
Hpy188III TCNNGA 3 cut(s) 173, 314, 353
HpyAV CCTTC 2 cut(s) 128, 174
HpyCH4IV ACGT 2 cut(s) 35, 349
HpyCH4V TGCA 2 cut(s) 4, 372
HpyF3I CTNAG 2 cut(s) 50, 301
HpySE526I ACGT 2 cut(s) 35, 349
Hsp92II CATG 1 cut(s) 176
Ksp22I TGATCA 1 cut(s) 169
Kzo9I GATC 1 cut(s) 169
LmnI GCTCC 1 cut(s) 120
LpnPI CCDG 1 cut(s) 249
Lsp1109I GCAGC 1 cut(s) 290
MaeI CTAG 1 cut(s) 314
MaeII ACGT 2 cut(s) 35, 349
MaeIII GTNAC 1 cut(s) 53
MalI GATC 1 cut(s) 171
MboI GATC 1 cut(s) 169
MboII GAAGA 2 cut(s) 236, 321
MhlI GDGCHC 2 cut(s) 260, 309
MlsI TGGCCA 1 cut(s) 158
MluCI AATT 1 cut(s) 191
MluNI TGGCCA 1 cut(s) 158
MlyI GAGTC 1 cut(s) 20
MmeI TCCRAC 1 cut(s) 229
MnlI CCTC 3 cut(s) 136, 137, 245
Mox20I TGGCCA 1 cut(s) 158
MroXI GAANNNNTTC 1 cut(s) 328
MscI TGGCCA 1 cut(s) 158
MslI CAYNNNNRTG 1 cut(s) 265
Msp20I TGGCCA 1 cut(s) 158
Mva1269I GAATGC 1 cut(s) 65
NdeII GATC 1 cut(s) 169
NlaIII CATG 1 cut(s) 176
NmuCI GTSAC 1 cut(s) 53
NspV TTCGAA 1 cut(s) 69
PagI TCATGA 1 cut(s) 172
PctI GAATGC 1 cut(s) 65
PdmI GAANNNNTTC 1 cut(s) 328
Pfl23II CGTACG 1 cut(s) 196
PkrI GCNGC 1 cut(s) 280
PleI GAGTC 1 cut(s) 19
PpsI GAGTC 1 cut(s) 19
Psp1406I AACGTT 1 cut(s) 35
PspLI CGTACG 1 cut(s) 196
RsaI GTAC 1 cut(s) 198
RsaNI GTAC 1 cut(s) 197
RseI CAYNNNNRTG 1 cut(s) 265
SatI GCNGC 1 cut(s) 279
Sau3AI GATC 1 cut(s) 169
SchI GAGTC 1 cut(s) 20
SduI GDGCHC 2 cut(s) 260, 309
SetI ASST 4 cut(s) 38, 147, 185, 352
SfcI CTRYAG 1 cut(s) 22
SfuI TTCGAA 1 cut(s) 69
SgeI CNNG 8 cut(s) 134, 185, 199, 276, 320, 326, 365, 372
SmiMI CAYNNNNRTG 1 cut(s) 265
Sse9I AATT 1 cut(s) 191
SspMI CTAG 1 cut(s) 314
TaiI ACGT 2 cut(s) 38, 352
TaqI TCGA 1 cut(s) 69
TasI AATT 1 cut(s) 191
TscAI CASTG 2 cut(s) 214, 309
TseFI GTSAC 1 cut(s) 53
TseI GCWGC 1 cut(s) 278
Tsp45I GTSAC 1 cut(s) 53
TspDTI ATGAA 3 cut(s) 137, 207, 243
TspRI CASTG 2 cut(s) 214, 309
XapI RAATTY 1 cut(s) 191
XbaI TCTAGA 1 cut(s) 313
XmnI GAANNNNTTC 1 cut(s) 328
XspI CTAG 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.