Rroxscaffold_5G00348340

(R)-mandelonitrile lyase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
20437028 .. 20445212
8185 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00348340.1

Sequence Viewer

Length: 336 bp
ATGGGTCAATGTATTTTGAAGAATTGCCTTTTGGTTGGATGGAAAAACTACATGGAGAAATCGACAATAGGTGCTAGACTACTGCTCTTGAACCTTTTTGTACTTGGCTTTCTTGCTCAATCAACAGTTCATTCATTGGCCAATGCATCTGCACCTGATCATGATTTTAGCTACATGAAGATTGTGAAGGATGCCACGTTGGAAGATAAATATGACTATATTGTAGTTGGGGGAGGAACAGCAGGTTGTCCATTAGCAGCAACATTATCAGCAAGCTACTCGGTGCTTGTTCTTGAAAGGGGTAGTGCTCCTACTGCACATCCAAGTGTCTTGTGA

Protein Analysis

111

Amino Acids

11.83

Weight (kDa)

6.8

Isoelectric Point (pI)

28.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000533)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g08950 FvH4_6g09340
malus_domestica MD00G1012800.v1.1 MD00G1012900.v1.1 MD00G1013000.v1.1 MD00G1013300.v1.1 MD03G1090900.v1.1 MD03G1091100.v1.1 MD03G1091300.v1.1 MD03G1091400.v1.1 MD03G1091700.v1.1 MD03G1091900.v1.1 MD10G1279300.v1.1 MD13G1264000.v1.1 MD13G1264100.v1.1 MD13G1264200.v1.1 MD13G1264500.v1.1 MD16G1093000.v1.1 MD16G1093100.v1.1 MD16G1265300.v1.1 MD16G1265500.v1.1
prunus_persica Prupe.1G007400_v2.0.a1 Prupe.1G092200_v2.0.a1 Prupe.1G092300_v2.0.a1 Prupe.1G092400_v2.0.a1 Prupe.1G092500_v2.0.a1 Prupe.1G092700_v2.0.a1 Prupe.1G092900_v2.0.a1 Prupe.1G093000_v2.0.a1 Prupe.1G093200_v2.0.a1 Prupe.1G093300_v2.0.a1 Prupe.1G093500_v2.0.a1 Prupe.1G093600_v2.0.a1 Prupe.1G093600_v2.0.a1 Prupe.1G093600_v2.0.a1 Prupe.1G093700_v2.0.a1 Prupe.1G093800_v2.0.a1 Prupe.1G093800_v2.0.a1 Prupe.1G096400_v2.0.a1 Prupe.1G096500_v2.0.a1 Prupe.1G096500_v2.0.a1
pyrus_communis pycom03g07290 pycom03g07320 pycom10g23300 pycom11g08780 pycom11g08790 pycom11g08810 pycom11g08820 pycom13g23800
rosa_chinensis RchiOBHm_Chr4g0403711 RchiOBHm_Chr4g0403741 RchiOBHm_Chr4g0403781
rosa_laevigata RLG00000008950 RLG00000008955 RLG00000008957 RLG00000008959
rosa_multiflora Rmu_co8470309.1_g000001 Rmu_sc0001496.1_g000015 Rmu_sc0004115.1_g000016 Rmu_sc0004388.1_g000007 Rmu_sc0007461.1_g000001 Rmu_sc0010412.1_g000002
rosa_roxburghii Rroxscaffold_5G00348330 Rroxscaffold_5G00348340 Rroxscaffold_5G00348350 Rroxscaffold_5G00348400
rosa_rugosa Rorug04G0045400 Rorug04G0045500 Rorug04G0045600
rosa_samantha Rh4AG120800 Rh4AG121000 Rh4BG113600 Rh4BG113900 Rh4BG114000 Rh4CG128300 Rh4CG129200 Rh4CG129300 Rh4CG129400 Rh4DG113700 Rh4DG113800 Rh4DG113900
rosa_wichuraiana Rw0G001200 Rw4G009830 Rw4G009850 Rw4G009860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 233
AcoI YGGCCR 1 cut(s) 138
AfaI GTAC 1 cut(s) 102
AgsI TTSAA 3 cut(s) 19, 91, 296
AjuI GAANNNNNNNTTGG 2 cut(s) 14, 46
AluBI AGCT 2 cut(s) 171, 276
AluI AGCT 2 cut(s) 171, 276
Alw21I GWGCWC 1 cut(s) 310
AoxI GGCC 1 cut(s) 138
ApeKI GCWGC 1 cut(s) 257
BalI TGGCCA 1 cut(s) 140
Bbv12I GWGCWC 1 cut(s) 310
BbvI GCAGC 1 cut(s) 269
BccI CCATC 1 cut(s) 33
BcgI CGANNNNNNTGC 2 cut(s) 261, 295
BclI TGATCA 1 cut(s) 157
BfaI CTAG 1 cut(s) 75
BfuAI ACCTGC 1 cut(s) 233
BisI GCNGC 1 cut(s) 258
BlsI GCNGC 1 cut(s) 259
BmsI GCATC 2 cut(s) 155, 181
BseGI GGATG 3 cut(s) 44, 196, 319
BseXI GCAGC 1 cut(s) 269
BsgI GTGCAG 2 cut(s) 135, 300
BshFI GGCC 1 cut(s) 140
BsiHKAI GWGCWC 1 cut(s) 310
BsnI GGCC 1 cut(s) 140
Bsp1286I GDGCHC 1 cut(s) 310
Bsp143I GATC 1 cut(s) 157
BspANI GGCC 1 cut(s) 140
BspHI TCATGA 1 cut(s) 160
BspMI ACCTGC 1 cut(s) 233
BssMI GATC 1 cut(s) 157
Bst4CI ACNGT 1 cut(s) 127
BstC8I GCNNGC 1 cut(s) 274
BstF5I GGATG 3 cut(s) 44, 196, 319
BstKTI GATC 1 cut(s) 160
BstMBI GATC 1 cut(s) 157
BstMWI GCNNNNNNNGC 1 cut(s) 314
BstV1I GCAGC 1 cut(s) 269
BsuRI GGCC 1 cut(s) 140
BtsCI GGATG 3 cut(s) 44, 196, 319
BveI ACCTGC 1 cut(s) 233
Cac8I GCNNGC 1 cut(s) 274
CciI TCATGA 1 cut(s) 160
Csp6I GTAC 1 cut(s) 101
CviAII CATG 3 cut(s) 52, 161, 175
CviJI RGCY 4 cut(s) 108, 140, 171, 276
CviKI_1 RGCY 4 cut(s) 108, 140, 171, 276
CviQI GTAC 1 cut(s) 101
DpnI GATC 1 cut(s) 159
DpnII GATC 1 cut(s) 157
EaeI YGGCCR 1 cut(s) 138
EcoT22I ATGCAT 1 cut(s) 148
FaeI CATG 3 cut(s) 55, 164, 178
FaiI YATR 5 cut(s) 53, 162, 176, 213, 219
FatI CATG 3 cut(s) 51, 160, 174
FbaI TGATCA 1 cut(s) 157
Fnu4HI GCNGC 1 cut(s) 258
FokI GGATG 3 cut(s) 51, 203, 306
Fsp4HI GCNGC 1 cut(s) 258
FspBI CTAG 1 cut(s) 75
GluI GCNGC 1 cut(s) 258
HaeIII GGCC 1 cut(s) 140
Hin1II CATG 3 cut(s) 55, 164, 178
Hpy188III TCNNGA 3 cut(s) 88, 161, 293
HpyAV CCTTC 1 cut(s) 181
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4IV ACGT 1 cut(s) 197
HpyCH4V TGCA 3 cut(s) 146, 152, 317
HpyF10VI GCNNNNNNNGC 1 cut(s) 314
HpySE526I ACGT 1 cut(s) 197
Hsp92II CATG 3 cut(s) 55, 164, 178
Ksp22I TGATCA 1 cut(s) 157
Kzo9I GATC 1 cut(s) 157
LmnI GCTCC 1 cut(s) 313
LpnPI CCDG 2 cut(s) 168, 228
Lsp1109I GCAGC 1 cut(s) 269
LweI GCATC 2 cut(s) 155, 181
MaeI CTAG 1 cut(s) 75
MaeII ACGT 1 cut(s) 197
MalI GATC 1 cut(s) 159
MboI GATC 1 cut(s) 157
MboII GAAGA 3 cut(s) 31, 190, 215
MhlI GDGCHC 1 cut(s) 310
MlsI TGGCCA 1 cut(s) 140
MluCI AATT 1 cut(s) 22
MluNI TGGCCA 1 cut(s) 140
MmeI TCCRAC 2 cut(s) 16, 180
MnlI CCTC 1 cut(s) 227
Mox20I TGGCCA 1 cut(s) 140
Mph1103I ATGCAT 1 cut(s) 148
MscI TGGCCA 1 cut(s) 140
MslI CAYNNNNRTG 1 cut(s) 324
Msp20I TGGCCA 1 cut(s) 140
MwoI GCNNNNNNNGC 1 cut(s) 314
NdeII GATC 1 cut(s) 157
NlaIII CATG 3 cut(s) 55, 164, 178
NsiI ATGCAT 1 cut(s) 148
PagI TCATGA 1 cut(s) 160
PkrI GCNGC 1 cut(s) 259
RsaI GTAC 1 cut(s) 102
RsaNI GTAC 1 cut(s) 101
RseI CAYNNNNRTG 1 cut(s) 324
SatI GCNGC 1 cut(s) 258
Sau3AI GATC 1 cut(s) 157
SduI GDGCHC 1 cut(s) 310
SetI ASST 7 cut(s) 73, 96, 157, 173, 200, 247, 278
SfaNI GCATC 2 cut(s) 155, 181
SmiMI CAYNNNNRTG 1 cut(s) 324
Sse9I AATT 1 cut(s) 22
SspMI CTAG 1 cut(s) 75
TaaI ACNGT 1 cut(s) 127
TaiI ACGT 1 cut(s) 200
TaqI TCGA 1 cut(s) 62
TasI AATT 1 cut(s) 22
TatI WGTACW 1 cut(s) 100
TseI GCWGC 1 cut(s) 257
TspDTI ATGAA 3 cut(s) 119, 123, 191
XspI CTAG 1 cut(s) 75
Zsp2I ATGCAT 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.