pycom03g07290

(R)-mandelonitrile lyase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Forward (+)
5799546 .. 5801335
1790 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g07290.3

Sequence Viewer

Length: 1332 bp
ATGGAGAAATCAACAACTGCTGCTATATTATTGCTCTTGTACTTTTTTGGGTTCTGCCCTCAACCAGGGGTTCCCTCATTCGCCAATCCATTCGATGACCTTGAAGAATATGACTACATTGTTGTGGGAGGGAGCACGGCAGGGTGCCCTTTGGCAACAACTTTATCTGCAAACTACTCCGTGCTCCTTCTAGAAAGGGGAAATATTCCATCAGCATATCCAAATGTGTTGCGTGTCAATGGGACATTTGCAAATTTCATGCAAGAAGATGACGGTAAGACGCCGGTCCAGAGGTTCACATCAGAAGATGGTGTAGCTAATGTAAGAGGACCGGTTCTAGGCGGGTCAAGTATGATCGATATTGGTTTATACTCAAGAGCCGACAGTGAATTCTACGAGAAATCAGGAATTAAATTGGACATGAACTTAGTCAATAATTCATATGAATGGGTTGAAAACACTGTAGCATTTCGTCCGAATTTAGCACACTGGCAATCTGTTGTGAAAGATGCGATGTTAGAAGCTGGTGTTCGTCCAGACAATGGACTGACTTTGGATCATATTCTGGGAAGTAAAGTCACGGGTGCGCTCTTTGACAATCGTGGAAAAAGACATGGAGTTGTGGAACTGCTGAATAAAGGACATCCAAAAAACCTGAGAGTTGCAATTCATGCCACCGTAGAGAGGATCATTTTCTCTTCCAAAGCATCAAGTATCCAAACACATTTGATATATGCAATTATAGGTTTGTCAGCTAAAGGAATCATATACAGTGATTCTAACGGGAGGTCTCATCGGGCATTGATACGTGGTAAGGGTGAGGTTATATTGAGTGCAGGTGCAATTGGAAGTCCTCAACTTCTACTGCTTAGTGGTGTTGGCCCAAAATCTTACCTTTTATCTCTTAAAATCCCAGTTGTTCACCCACAACCTTACATTAGGCAGTTTATGCGTGATAATCCTCGTAATTACATTACCATTTTGCCCCCGTTTCAAGTAGAACCTTCTCCTACACAGGTTGTTGGTATCACAAGTGATTATTACATAGAGACTAACTCCGGCTTGCCATATTCTACTCAGGCCTTTAGTTTTTTCCCTAGTCCAACCATTCCCATGACCATAAATTCAAGTTTCGGGCAAATTGCTGCCAAATTTCCAGGACCCTTGTCCTATGGTTCTCTTAAACTGCAATCATCCTATGATGTCAAAGTTGCTCCAAATGTCAAATTCAACTACTTCGCACAGGAGGCAAACCTTTCTCGTTGTGTTAGTGCTGTGAGGAAAATGGGTGATTTATTAAAAACAAACTCATTGAAACTGTATAAGTCTTAA

Protein Analysis

444

Amino Acids

48.39

Weight (kDa)

8.97

Isoelectric Point (pI)

35.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000533)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g08950 FvH4_6g09340
malus_domestica MD00G1012800.v1.1 MD00G1012900.v1.1 MD00G1013000.v1.1 MD00G1013300.v1.1 MD03G1090900.v1.1 MD03G1091100.v1.1 MD03G1091300.v1.1 MD03G1091400.v1.1 MD03G1091700.v1.1 MD03G1091900.v1.1 MD10G1279300.v1.1 MD13G1264000.v1.1 MD13G1264100.v1.1 MD13G1264200.v1.1 MD13G1264500.v1.1 MD16G1093000.v1.1 MD16G1093100.v1.1 MD16G1265300.v1.1 MD16G1265500.v1.1
prunus_persica Prupe.1G007400_v2.0.a1 Prupe.1G092200_v2.0.a1 Prupe.1G092300_v2.0.a1 Prupe.1G092400_v2.0.a1 Prupe.1G092500_v2.0.a1 Prupe.1G092700_v2.0.a1 Prupe.1G092900_v2.0.a1 Prupe.1G093000_v2.0.a1 Prupe.1G093200_v2.0.a1 Prupe.1G093300_v2.0.a1 Prupe.1G093500_v2.0.a1 Prupe.1G093600_v2.0.a1 Prupe.1G093600_v2.0.a1 Prupe.1G093600_v2.0.a1 Prupe.1G093700_v2.0.a1 Prupe.1G093800_v2.0.a1 Prupe.1G093800_v2.0.a1 Prupe.1G096400_v2.0.a1 Prupe.1G096500_v2.0.a1 Prupe.1G096500_v2.0.a1
pyrus_communis pycom03g07290 pycom03g07320 pycom10g23300 pycom11g08780 pycom11g08790 pycom11g08810 pycom11g08820 pycom13g23800
rosa_chinensis RchiOBHm_Chr4g0403711 RchiOBHm_Chr4g0403741 RchiOBHm_Chr4g0403781
rosa_laevigata RLG00000008950 RLG00000008955 RLG00000008957 RLG00000008959
rosa_multiflora Rmu_co8470309.1_g000001 Rmu_sc0001496.1_g000015 Rmu_sc0004115.1_g000016 Rmu_sc0004388.1_g000007 Rmu_sc0007461.1_g000001 Rmu_sc0010412.1_g000002
rosa_roxburghii Rroxscaffold_5G00348330 Rroxscaffold_5G00348340 Rroxscaffold_5G00348350 Rroxscaffold_5G00348400
rosa_rugosa Rorug04G0045400 Rorug04G0045500 Rorug04G0045600
rosa_samantha Rh4AG120800 Rh4AG121000 Rh4BG113600 Rh4BG113900 Rh4BG114000 Rh4CG128300 Rh4CG129200 Rh4CG129300 Rh4CG129400 Rh4DG113700 Rh4DG113800 Rh4DG113900
rosa_wichuraiana Rw0G001200 Rw4G009830 Rw4G009850 Rw4G009860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 827
Acc36I ACCTGC 1 cut(s) 827
AccB1I GGYRCC 1 cut(s) 144
AccB7I CCANNNNNTGG 1 cut(s) 542
AciI CCGC 1 cut(s) 342
AclWI GGATC 2 cut(s) 564, 695
AcsI RAATTY 6 cut(s) 253, 389, 478, 1123, 1151, 1226
AcyI GRCGYC 1 cut(s) 281
AfaI GTAC 1 cut(s) 41
AfiI CCNNNNNNNGG 4 cut(s) 65, 338, 542, 684
AgeI ACCGGT 1 cut(s) 331
AgsI TTSAA 6 cut(s) 104, 455, 995, 1128, 1231, 1315
AjnI CCWGG 2 cut(s) 64, 1156
AluBI AGCT 3 cut(s) 317, 524, 755
AluI AGCT 3 cut(s) 317, 524, 755
Alw21I GWGCWC 2 cut(s) 137, 186
Alw26I GTCTC 2 cut(s) 795, 1043
AlwI GGATC 2 cut(s) 564, 695
AoxI GGCC 2 cut(s) 880, 1080
ApeKI GCWGC 2 cut(s) 20, 1145
ApoI RAATTY 6 cut(s) 253, 389, 478, 1123, 1151, 1226
AsiGI ACCGGT 1 cut(s) 331
AspLEI GCGC 1 cut(s) 589
AspS9I GGNCC 4 cut(s) 286, 329, 881, 1160
AsuHPI GGTGA 3 cut(s) 830, 914, 1301
AvaII GGWCC 3 cut(s) 286, 329, 1160
BaeGI GKGCMC 1 cut(s) 149
BanI GGYRCC 1 cut(s) 144
Bbv12I GWGCWC 2 cut(s) 137, 186
BbvI GCAGC 2 cut(s) 7, 1132
BccI CCATC 2 cut(s) 217, 302
BceAI ACGGC 1 cut(s) 153
BciT130I CCWGG 2 cut(s) 66, 1158
BciVI GTATCC 1 cut(s) 725
BcoDI GTCTC 2 cut(s) 795, 1043
BfaI CTAG 3 cut(s) 191, 338, 1098
BfmI CTRYAG 1 cut(s) 462
BfuAI ACCTGC 1 cut(s) 827
BfuI GTATCC 1 cut(s) 725
BisI GCNGC 2 cut(s) 21, 1146
BlsI GCNGC 2 cut(s) 22, 1147
Bme1390I CCNGG 2 cut(s) 66, 1158
Bme18I GGWCC 3 cut(s) 286, 329, 1160
BmgT120I GGNCC 4 cut(s) 286, 329, 881, 1160
BmiI GGNNCC 3 cut(s) 72, 146, 1162
BmrFI CCNGG 2 cut(s) 66, 1158
BmrI ACTGGG 1 cut(s) 908
BmsI GCATC 2 cut(s) 499, 716
BmuI ACTGGG 1 cut(s) 908
BoxI GACNNNNGTC 2 cut(s) 284, 1165
BplI GAGNNNNNCTC 2 cut(s) 1040, 1072
BpuEI CTTGAG 1 cut(s) 358
Bsa29I ATCGAT 1 cut(s) 357
BsaAI YACGTR 1 cut(s) 809
BsaHI GRCGYC 1 cut(s) 281
BsaI GGTCTC 1 cut(s) 795
BsaJI CCNNGG 1 cut(s) 65
BsaWI WCCGGW 1 cut(s) 331
Bsc4I CCNNNNNNNGG 4 cut(s) 65, 338, 542, 684
Bse118I RCCGGY 2 cut(s) 283, 331
Bse1I ACTGG 2 cut(s) 494, 914
BseBI CCWGG 2 cut(s) 66, 1158
BseCI ATCGAT 1 cut(s) 357
BseDI CCNNGG 1 cut(s) 65
BseGI GGATG 2 cut(s) 643, 1193
BseLI CCNNNNNNNGG 4 cut(s) 65, 338, 542, 684
BseMII CTCAG 2 cut(s) 647, 1091
BseNI ACTGG 2 cut(s) 494, 914
BseSI GKGCMC 1 cut(s) 149
BseXI GCAGC 2 cut(s) 7, 1132
BsgI GTGCAG 1 cut(s) 855
BshFI GGCC 2 cut(s) 882, 1082
BshNI GGYRCC 1 cut(s) 144
BshTI ACCGGT 1 cut(s) 331
BshVI ATCGAT 1 cut(s) 357
BsiHKAI GWGCWC 2 cut(s) 137, 186
BsiSI CCGG 3 cut(s) 284, 332, 1059
BslFI GGGAC 1 cut(s) 256
BslI CCNNNNNNNGG 4 cut(s) 65, 338, 542, 684
BsmAI GTCTC 2 cut(s) 795, 1043
BsmFI GGGAC 1 cut(s) 256
BsnI GGCC 2 cut(s) 882, 1082
Bso31I GGTCTC 1 cut(s) 795
Bsp1286I GDGCHC 3 cut(s) 137, 149, 186
Bsp143I GATC 3 cut(s) 354, 556, 687
BspACI CCGC 1 cut(s) 342
BspANI GGCC 2 cut(s) 882, 1082
BspCNI CTCAG 2 cut(s) 648, 1090
BspDI ATCGAT 1 cut(s) 357
BspLI GGNNCC 3 cut(s) 72, 146, 1162
BspMI ACCTGC 1 cut(s) 827
BspPI GGATC 2 cut(s) 564, 695
BspT107I GGYRCC 1 cut(s) 144
BspTNI GGTCTC 1 cut(s) 795
BsrFI RCCGGY 2 cut(s) 283, 331
BsrI ACTGG 2 cut(s) 494, 914
BssAI RCCGGY 2 cut(s) 283, 331
BssECI CCNNGG 1 cut(s) 65
BssMI GATC 3 cut(s) 354, 556, 687
BssNI GRCGYC 1 cut(s) 281
Bst2UI CCWGG 2 cut(s) 66, 1158
Bst4CI ACNGT 6 cut(s) 275, 386, 463, 679, 773, 1320
Bst6I CTCTTC 1 cut(s) 703
BstACI GRCGYC 1 cut(s) 281
BstAPI GCANNNNNTGC 2 cut(s) 671, 949
BstBAI YACGTR 1 cut(s) 809
BstC8I GCNNGC 1 cut(s) 1064
BstDEI CTNAG 4 cut(s) 427, 656, 869, 1077
BstENI CCTNNNNNAGG 1 cut(s) 63
BstF5I GGATG 2 cut(s) 643, 1193
BstHHI GCGC 1 cut(s) 589
BstKTI GATC 3 cut(s) 357, 559, 690
BstMAI GTCTC 2 cut(s) 795, 1043
BstMBI GATC 3 cut(s) 354, 556, 687
BstMWI GCNNNNNNNGC 3 cut(s) 671, 949, 1247
BstNI CCWGG 2 cut(s) 66, 1158
BstPAI GACNNNNGTC 2 cut(s) 284, 1165
BstSCI CCNGG 2 cut(s) 64, 1156
BstSFI CTRYAG 1 cut(s) 462
BstSLI GKGCMC 1 cut(s) 149
BstV1I GCAGC 2 cut(s) 7, 1132
Bsu15I ATCGAT 1 cut(s) 357
BsuI GTATCC 1 cut(s) 725
BsuRI GGCC 2 cut(s) 882, 1082
BsuTUI ATCGAT 1 cut(s) 357
BtgZI GCGATG 1 cut(s) 527
BtsCI GGATG 2 cut(s) 643, 1193
BtsIMutI CAGTG 4 cut(s) 391, 459, 487, 778
BveI ACCTGC 1 cut(s) 827
Cac8I GCNNGC 1 cut(s) 1064
CfoI GCGC 1 cut(s) 589
Cfr10I RCCGGY 2 cut(s) 283, 331
Cfr13I GGNCC 4 cut(s) 286, 329, 881, 1160
ClaI ATCGAT 1 cut(s) 357
CseI GACGC 1 cut(s) 289
Csp6I GTAC 1 cut(s) 40
CspAI ACCGGT 1 cut(s) 331
CviAII CATG 5 cut(s) 259, 421, 614, 671, 1114
CviJI RGCY 7 cut(s) 317, 380, 524, 755, 882, 1062, 1082
CviKI_1 RGCY 7 cut(s) 317, 380, 524, 755, 882, 1062, 1082
CviQI GTAC 1 cut(s) 40
DdeI CTNAG 4 cut(s) 427, 656, 869, 1077
DpnI GATC 3 cut(s) 356, 558, 689
DpnII GATC 3 cut(s) 354, 556, 687
Eam1104I CTCTTC 1 cut(s) 703
EarI CTCTTC 1 cut(s) 703
Eco147I AGGCCT 1 cut(s) 1082
Eco31I GGTCTC 1 cut(s) 795
Eco47I GGWCC 3 cut(s) 286, 329, 1160
EcoNI CCTNNNNNAGG 1 cut(s) 63
EcoO109I RGGNCCY 1 cut(s) 1160
EcoRI GAATTC 1 cut(s) 389
EcoRII CCWGG 2 cut(s) 64, 1156
FaeI CATG 5 cut(s) 262, 424, 617, 674, 1117
FaqI GGGAC 1 cut(s) 256
FatI CATG 5 cut(s) 258, 420, 613, 670, 1113
FauI CCCGC 1 cut(s) 335
FauNDI CATATG 1 cut(s) 442
Fnu4HI GCNGC 2 cut(s) 21, 1146
FokI GGATG 2 cut(s) 630, 1180
Fsp4HI GCNGC 2 cut(s) 21, 1146
FspBI CTAG 3 cut(s) 191, 338, 1098
GlaI GCGC 1 cut(s) 588
GluI GCNGC 2 cut(s) 21, 1146
HaeIII GGCC 2 cut(s) 882, 1082
HapII CCGG 3 cut(s) 284, 332, 1059
HgaI GACGC 1 cut(s) 289
HhaI GCGC 1 cut(s) 589
Hin1I GRCGYC 1 cut(s) 281
Hin1II CATG 5 cut(s) 262, 424, 617, 674, 1117
Hin6I GCGC 1 cut(s) 587
HinP1I GCGC 1 cut(s) 587
HinfI GANTC 2 cut(s) 762, 776
HpaII CCGG 3 cut(s) 284, 332, 1059
HphI GGTGA 3 cut(s) 830, 914, 1301
Hpy166II GTNNAC 2 cut(s) 297, 922
Hpy188I TCNGA 2 cut(s) 304, 477
Hpy188III TCNNGA 5 cut(s) 191, 289, 375, 405, 536
Hpy8I GTNNAC 2 cut(s) 297, 922
HpyAV CCTTC 2 cut(s) 197, 1014
HpyCH4III ACNGT 6 cut(s) 275, 386, 463, 679, 773, 1320
HpyCH4IV ACGT 1 cut(s) 808
HpyCH4V TGCA 8 cut(s) 170, 251, 262, 665, 737, 836, 842, 1189
HpyF10VI GCNNNNNNNGC 3 cut(s) 671, 949, 1247
HpyF3I CTNAG 4 cut(s) 427, 656, 869, 1077
HpySE526I ACGT 1 cut(s) 808
Hsp92I GRCGYC 1 cut(s) 281
Hsp92II CATG 5 cut(s) 262, 424, 617, 674, 1117
HspAI GCGC 1 cut(s) 587
Kzo9I GATC 3 cut(s) 354, 556, 687
LmnI GCTCC 3 cut(s) 132, 189, 1219
Lsp1109I GCAGC 2 cut(s) 7, 1132
LweI GCATC 2 cut(s) 499, 716
MaeI CTAG 3 cut(s) 191, 338, 1098
MaeII ACGT 1 cut(s) 808
MaeIII GTNAC 1 cut(s) 577
MalI GATC 3 cut(s) 356, 558, 689
MboI GATC 3 cut(s) 354, 556, 687
MboII GAAGA 4 cut(s) 116, 278, 317, 690
MfeI CAATTG 1 cut(s) 843
MhlI GDGCHC 3 cut(s) 137, 149, 186
MmeI TCCRAC 1 cut(s) 1127
MseI TTAA 5 cut(s) 411, 906, 1182, 1298, 1330
MslI CAYNNNNRTG 3 cut(s) 122, 445, 1112
MspI CCGG 3 cut(s) 284, 332, 1059
MspR9I CCNGG 2 cut(s) 66, 1158
MunI CAATTG 1 cut(s) 843
MvaI CCWGG 2 cut(s) 66, 1158
MwoI GCNNNNNNNGC 3 cut(s) 671, 949, 1247
NdeI CATATG 1 cut(s) 442
NdeII GATC 3 cut(s) 354, 556, 687
NlaIII CATG 5 cut(s) 262, 424, 617, 674, 1117
NlaIV GGNNCC 3 cut(s) 72, 146, 1162
NmuCI GTSAC 1 cut(s) 577
PaqCI CACCTGC 1 cut(s) 827
PceI AGGCCT 1 cut(s) 1082
PfeI GAWTC 2 cut(s) 762, 776
PflMI CCANNNNNTGG 1 cut(s) 542
PfoI TCCNGGA 1 cut(s) 1156
PinAI ACCGGT 1 cut(s) 331
PkrI GCNGC 2 cut(s) 22, 1147
Ppu21I YACGTR 1 cut(s) 809
PpuMI RGGWCCY 1 cut(s) 1160
PshAI GACNNNNGTC 2 cut(s) 284, 1165
Psp5II RGGWCCY 1 cut(s) 1160
Psp6I CCWGG 2 cut(s) 64, 1156
PspGI CCWGG 2 cut(s) 64, 1156
PspN4I GGNNCC 3 cut(s) 72, 146, 1162
PspPI GGNCC 4 cut(s) 286, 329, 881, 1160
PspPPI RGGWCCY 1 cut(s) 1160
RsaI GTAC 1 cut(s) 41
RsaNI GTAC 1 cut(s) 40
RseI CAYNNNNRTG 3 cut(s) 122, 445, 1112
SaqAI TTAA 5 cut(s) 411, 906, 1182, 1298, 1330
SatI GCNGC 2 cut(s) 21, 1146
Sau3AI GATC 3 cut(s) 354, 556, 687
Sau96I GGNCC 4 cut(s) 286, 329, 881, 1160
ScrFI CCNGG 2 cut(s) 66, 1158
SduI GDGCHC 3 cut(s) 137, 149, 186
SfaNI GCATC 2 cut(s) 499, 716
SfcI CTRYAG 1 cut(s) 462
SinI GGWCC 3 cut(s) 286, 329, 1160
SmiMI CAYNNNNRTG 3 cut(s) 122, 445, 1112
SmlI CTYRAG 1 cut(s) 373
SmoI CTYRAG 1 cut(s) 373
SseBI AGGCCT 1 cut(s) 1082
SsiI CCGC 1 cut(s) 342
SspI AATATT 1 cut(s) 205
SspMI CTAG 3 cut(s) 191, 338, 1098
StuI AGGCCT 1 cut(s) 1082
StyD4I CCNGG 2 cut(s) 64, 1156
TaaI ACNGT 6 cut(s) 275, 386, 463, 679, 773, 1320
TaiI ACGT 1 cut(s) 811
TaqI TCGA 2 cut(s) 93, 357
TatI WGTACW 1 cut(s) 39
TfiI GAWTC 2 cut(s) 762, 776
Tru1I TTAA 5 cut(s) 411, 906, 1182, 1298, 1330
Tru9I TTAA 5 cut(s) 411, 906, 1182, 1298, 1330
TscAI CASTG 4 cut(s) 391, 466, 494, 778
TseFI GTSAC 1 cut(s) 577
TseI GCWGC 2 cut(s) 20, 1145
Tsp45I GTSAC 1 cut(s) 577
TspDTI ATGAA 5 cut(s) 247, 429, 437, 459, 659
TspGWI ACGGA 1 cut(s) 169
TspRI CASTG 4 cut(s) 391, 466, 494, 778
Van91I CCANNNNNTGG 1 cut(s) 542
VpaK11BI GGWCC 3 cut(s) 286, 329, 1160
XagI CCTNNNNNAGG 1 cut(s) 63
XapI RAATTY 6 cut(s) 253, 389, 478, 1123, 1151, 1226
XbaI TCTAGA 1 cut(s) 190
XspI CTAG 3 cut(s) 191, 338, 1098
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.