Rmu_sc0004388.1_g000007

(R)-mandelonitrile lyase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004388.1
Physical Location & Seq
Forward (+)
33874 .. 34536
663 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004388.1_g000007.1.cds

Sequence Viewer

Length: 663 bp
atgaagtttgtgcgctatgccaccgatctaccgctagaagaagaatacgactacattgtagttgggggaggaacagcaggctgtccattggcaacaactttatccgaaaagtattcagtattggttctagaaagaggcagtgttcctagtgcatatccaagtgtcttgcgtgaagaaaagtttgcgagtaatgtcatgcaggaagatgatggtaagatcccagctcaagggttcacctcagaagaaggtgttcgtaatgcaagaggcaggatcttgggtgggtcgagtatgatcaatgctggtttttattccagagccgaaaaggagttctatctcacatctggaattgaatgggatatggatatggtttataaggcatatacttgggtcgaaaacaccaccgtattccgcccggttaatgtggaaacttggcaatctgttgtgaaagaagccttattggaggctggtgttactccggacaatggatttaatttggaacacattccaggagctaaagttgggggttcgatttttgacagtaatggaaggaggcatggagctgttgaactgcttaatagagcagagccaaacaaattgcaagttgcagttcatgccacagtagagaggatcatcttttcttccaatgtgtcaagtaagacgtaa

Protein Analysis

220

Amino Acids

24.2

Weight (kDa)

5.12

Isoelectric Point (pI)

41.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000533)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g08950 FvH4_6g09340
malus_domestica MD00G1012800.v1.1 MD00G1012900.v1.1 MD00G1013000.v1.1 MD00G1013300.v1.1 MD03G1090900.v1.1 MD03G1091100.v1.1 MD03G1091300.v1.1 MD03G1091400.v1.1 MD03G1091700.v1.1 MD03G1091900.v1.1 MD10G1279300.v1.1 MD13G1264000.v1.1 MD13G1264100.v1.1 MD13G1264200.v1.1 MD13G1264500.v1.1 MD16G1093000.v1.1 MD16G1093100.v1.1 MD16G1265300.v1.1 MD16G1265500.v1.1
prunus_persica Prupe.1G007400_v2.0.a1 Prupe.1G092200_v2.0.a1 Prupe.1G092300_v2.0.a1 Prupe.1G092400_v2.0.a1 Prupe.1G092500_v2.0.a1 Prupe.1G092700_v2.0.a1 Prupe.1G092900_v2.0.a1 Prupe.1G093000_v2.0.a1 Prupe.1G093200_v2.0.a1 Prupe.1G093300_v2.0.a1 Prupe.1G093500_v2.0.a1 Prupe.1G093600_v2.0.a1 Prupe.1G093600_v2.0.a1 Prupe.1G093600_v2.0.a1 Prupe.1G093700_v2.0.a1 Prupe.1G093800_v2.0.a1 Prupe.1G093800_v2.0.a1 Prupe.1G096400_v2.0.a1 Prupe.1G096500_v2.0.a1 Prupe.1G096500_v2.0.a1
pyrus_communis pycom03g07290 pycom03g07320 pycom10g23300 pycom11g08780 pycom11g08790 pycom11g08810 pycom11g08820 pycom13g23800
rosa_chinensis RchiOBHm_Chr4g0403711 RchiOBHm_Chr4g0403741 RchiOBHm_Chr4g0403781
rosa_laevigata RLG00000008950 RLG00000008955 RLG00000008957 RLG00000008959
rosa_multiflora Rmu_co8470309.1_g000001 Rmu_sc0001496.1_g000015 Rmu_sc0004115.1_g000016 Rmu_sc0004388.1_g000007 Rmu_sc0007461.1_g000001 Rmu_sc0010412.1_g000002
rosa_roxburghii Rroxscaffold_5G00348330 Rroxscaffold_5G00348340 Rroxscaffold_5G00348350 Rroxscaffold_5G00348400
rosa_rugosa Rorug04G0045400 Rorug04G0045500 Rorug04G0045600
rosa_samantha Rh4AG120800 Rh4AG121000 Rh4BG113600 Rh4BG113900 Rh4BG114000 Rh4CG128300 Rh4CG129200 Rh4CG129300 Rh4CG129400 Rh4DG113700 Rh4DG113800 Rh4DG113900
rosa_wichuraiana Rw0G001200 Rw4G009830 Rw4G009850 Rw4G009860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 372
AccIII TCCGGA 1 cut(s) 475
AciI CCGC 2 cut(s) 32, 409
AclWI GGATC 3 cut(s) 211, 278, 635
AfiI CCNNNNNNNGG 2 cut(s) 227, 482
AgsI TTSAA 2 cut(s) 350, 566
AjnI CCWGG 1 cut(s) 505
AluBI AGCT 3 cut(s) 224, 512, 560
AluI AGCT 3 cut(s) 224, 512, 560
AlwI GGATC 3 cut(s) 211, 278, 635
Aor13HI TCCGGA 1 cut(s) 475
Asp700I GAANNNNTTC 2 cut(s) 249, 501
AspLEI GCGC 1 cut(s) 15
AsuC2I CCSGG 1 cut(s) 413
AsuHPI GGTGA 1 cut(s) 226
BccI CCATC 1 cut(s) 203
BciT130I CCWGG 1 cut(s) 507
BclI TGATCA 1 cut(s) 291
BcnI CCSGG 1 cut(s) 413
BfaI CTAG 3 cut(s) 35, 128, 147
Bme1390I CCNGG 2 cut(s) 413, 507
BmrFI CCNGG 2 cut(s) 413, 507
BpuEI CTTGAG 1 cut(s) 210
BpuMI CCSGG 1 cut(s) 413
BsaWI WCCGGW 1 cut(s) 475
BsaXI ACNNNNNCTCC 2 cut(s) 501, 531
Bsc4I CCNNNNNNNGG 2 cut(s) 227, 482
BseAI TCCGGA 1 cut(s) 475
BseBI CCWGG 1 cut(s) 507
BseLI CCNNNNNNNGG 2 cut(s) 227, 482
BseMII CTCAG 1 cut(s) 252
BseYI CCCAGC 1 cut(s) 220
BsiSI CCGG 2 cut(s) 413, 476
BslI CCNNNNNNNGG 2 cut(s) 227, 482
Bsp13I TCCGGA 1 cut(s) 475
Bsp143I GATC 5 cut(s) 25, 216, 270, 291, 627
BspACI CCGC 2 cut(s) 32, 409
BspCNI CTCAG 1 cut(s) 251
BspEI TCCGGA 1 cut(s) 475
BspPI GGATC 3 cut(s) 211, 278, 635
BssMI GATC 5 cut(s) 25, 216, 270, 291, 627
Bst2UI CCWGG 1 cut(s) 507
Bst4CI ACNGT 3 cut(s) 403, 539, 619
BstAPI GCANNNNNTGC 1 cut(s) 611
BstC8I GCNNGC 1 cut(s) 79
BstDEI CTNAG 1 cut(s) 238
BstHHI GCGC 1 cut(s) 15
BstKTI GATC 5 cut(s) 28, 219, 273, 294, 630
BstMBI GATC 5 cut(s) 25, 216, 270, 291, 627
BstMWI GCNNNNNNNGC 1 cut(s) 611
BstNI CCWGG 1 cut(s) 507
BstSCI CCNGG 2 cut(s) 411, 505
BstX2I RGATCY 2 cut(s) 216, 270
BstYI RGATCY 2 cut(s) 216, 270
BtsI GCAGTG 1 cut(s) 145
BtsIMutI CAGTG 1 cut(s) 145
Cac8I GCNNGC 1 cut(s) 79
CfoI GCGC 1 cut(s) 15
CviAII CATG 3 cut(s) 196, 554, 611
CviJI RGCY 8 cut(s) 81, 224, 317, 452, 464, 512, 560, 586
CviKI_1 RGCY 8 cut(s) 81, 224, 317, 452, 464, 512, 560, 586
DdeI CTNAG 1 cut(s) 238
DpnI GATC 5 cut(s) 27, 218, 272, 293, 629
DpnII GATC 5 cut(s) 25, 216, 270, 291, 627
EciI GGCGGA 1 cut(s) 398
EcoRII CCWGG 1 cut(s) 505
FaeI CATG 3 cut(s) 199, 557, 614
FatI CATG 3 cut(s) 195, 553, 610
FbaI TGATCA 1 cut(s) 291
FspBI CTAG 3 cut(s) 35, 128, 147
GlaI GCGC 1 cut(s) 14
GsaI CCCAGC 1 cut(s) 224
HapII CCGG 2 cut(s) 413, 476
HhaI GCGC 1 cut(s) 15
Hin1II CATG 3 cut(s) 199, 557, 614
Hin6I GCGC 1 cut(s) 13
HinP1I GCGC 1 cut(s) 13
HpaII CCGG 2 cut(s) 413, 476
HphI GGTGA 1 cut(s) 226
Hpy166II GTNNAC 1 cut(s) 234
Hpy188I TCNGA 2 cut(s) 106, 241
Hpy188III TCNNGA 4 cut(s) 128, 312, 342, 476
Hpy8I GTNNAC 1 cut(s) 234
HpyAV CCTTC 2 cut(s) 239, 540
HpyCH4III ACNGT 3 cut(s) 403, 539, 619
HpyCH4IV ACGT 1 cut(s) 659
HpyCH4V TGCA 5 cut(s) 152, 199, 260, 598, 605
HpyF10VI GCNNNNNNNGC 1 cut(s) 611
HpyF3I CTNAG 1 cut(s) 238
HpySE526I ACGT 1 cut(s) 659
Hsp92II CATG 3 cut(s) 199, 557, 614
HspAI GCGC 1 cut(s) 13
Kpn2I TCCGGA 1 cut(s) 475
Ksp22I TGATCA 1 cut(s) 291
Kzo9I GATC 5 cut(s) 25, 216, 270, 291, 627
LmnI GCTCC 2 cut(s) 509, 557
MaeI CTAG 3 cut(s) 35, 128, 147
MaeII ACGT 1 cut(s) 659
MaeIII GTNAC 1 cut(s) 469
MalI GATC 5 cut(s) 27, 218, 272, 293, 629
MboI GATC 5 cut(s) 25, 216, 270, 291, 627
MboII GAAGA 6 cut(s) 50, 53, 185, 215, 254, 630
MflI RGATCY 2 cut(s) 216, 270
MluCI AATT 3 cut(s) 345, 490, 593
MnlI CCTC 7 cut(s) 62, 128, 247, 257, 454, 543, 618
MroI TCCGGA 1 cut(s) 475
MroXI GAANNNNTTC 2 cut(s) 249, 501
MseI TTAA 3 cut(s) 417, 489, 573
MspI CCGG 2 cut(s) 413, 476
MspR9I CCNGG 2 cut(s) 413, 507
MvaI CCWGG 1 cut(s) 507
MwoI GCNNNNNNNGC 1 cut(s) 611
NciI CCSGG 1 cut(s) 413
NdeII GATC 5 cut(s) 25, 216, 270, 291, 627
NlaIII CATG 3 cut(s) 199, 557, 614
PdmI GAANNNNTTC 2 cut(s) 249, 501
PfoI TCCNGGA 1 cut(s) 505
PsiI TTATAA 1 cut(s) 372
Psp6I CCWGG 1 cut(s) 505
PspFI CCCAGC 1 cut(s) 220
PspGI CCWGG 1 cut(s) 505
PsuI RGATCY 2 cut(s) 216, 270
SaqAI TTAA 3 cut(s) 417, 489, 573
Sau3AI GATC 5 cut(s) 25, 216, 270, 291, 627
ScrFI CCNGG 2 cut(s) 413, 507
SetI ASST 6 cut(s) 226, 239, 250, 514, 562, 662
SmlI CTYRAG 1 cut(s) 225
SmoI CTYRAG 1 cut(s) 225
Sse9I AATT 3 cut(s) 345, 490, 593
SsiI CCGC 2 cut(s) 32, 409
SspMI CTAG 3 cut(s) 35, 128, 147
StyD4I CCNGG 2 cut(s) 411, 505
TaaI ACNGT 3 cut(s) 403, 539, 619
TaiI ACGT 1 cut(s) 662
TaqI TCGA 3 cut(s) 284, 390, 527
TasI AATT 3 cut(s) 345, 490, 593
Tru1I TTAA 3 cut(s) 417, 489, 573
Tru9I TTAA 3 cut(s) 417, 489, 573
TscAI CASTG 1 cut(s) 145
TspDTI ATGAA 2 cut(s) 17, 599
TspRI CASTG 1 cut(s) 145
XbaI TCTAGA 1 cut(s) 127
XmnI GAANNNNTTC 2 cut(s) 249, 501
XspI CTAG 3 cut(s) 35, 128, 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.