Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000533

Physical Location & Seq

Genomic Coordinates Reverse (-)

20435525 .. 20436907

Gene Structure 1383 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00348330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGATCAATGCTAGTTTCTCCTCCAAAGCTGACAGGGAATTCTTTGTTAAATTTGGAATTAAATGGGACATGGATTTGGTTGATAAGGCATATCACCGGGTTGAAAGCACTGTCGTCTCTCGTCCAAATCTGCCACGTTCAAATTGGCAATCTATTGTGAAAGAAGCATTGTTGGAGGCTGGTGTTGGTCCAAACAATGGATTCAGTTTGGATCACATTAAGGGAACTAAAGTTGGCGGTTCTACTTTTGATACACATGGAAGGAGACACGGAGCTGTTGAATTACTTAATAGAGGAAACCTAAAGAACTTGCGAGTGGGAATTTATGCCACGAAGATTGGGGAGTTATTAAATACCATGTCACCGAAAGCATTTAAGGTTCAAGCTTTGTCGAGCACAAAAGCTTACAATTTTTATGGTCCAACTTTACCTATGAACCGGACAGATGATGCATCTTTTGGAGAATTTTGTCGTGATACAGTTTCAACAATTTGGCATTTCCATGGAGGATGCCTTGTCGGAAAGGTGGTCGATAGCAGCTTGCGGGTCATAGGAATCGATGCTTTGCGTGTTGTTGACGCATCCGCATTCAATTTCACACCGGGGACAAATCCTCGGCCACACTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0031410 GO:0031982 GO:0033095 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko00460 ko01110 map00460 map01110

Pfam Domains

Protein Families

GMC_oxred_C GMC_oxred_N

Protein Analysis

209

Amino Acids

23.03

Weight (kDa)

9.54

Isoelectric Point (pI)

20.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GMC_oxred_C	PF05199	145 - 206	2.9e-13	GMC oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000533)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g08950 FvH4_6g09340
malus_domestica	MD00G1012800.v1.1 MD00G1012900.v1.1 MD00G1013000.v1.1 MD00G1013300.v1.1 MD03G1090900.v1.1 MD03G1091100.v1.1 MD03G1091300.v1.1 MD03G1091400.v1.1 MD03G1091700.v1.1 MD03G1091900.v1.1 MD10G1279300.v1.1 MD13G1264000.v1.1 MD13G1264100.v1.1 MD13G1264200.v1.1 MD13G1264500.v1.1 MD16G1093000.v1.1 MD16G1093100.v1.1 MD16G1265300.v1.1 MD16G1265500.v1.1
prunus_persica	Prupe.1G007400_v2.0.a1 Prupe.1G092200_v2.0.a1 Prupe.1G092300_v2.0.a1 Prupe.1G092400_v2.0.a1 Prupe.1G092500_v2.0.a1 Prupe.1G092700_v2.0.a1 Prupe.1G092900_v2.0.a1 Prupe.1G093000_v2.0.a1 Prupe.1G093200_v2.0.a1 Prupe.1G093300_v2.0.a1 Prupe.1G093500_v2.0.a1 Prupe.1G093600_v2.0.a1 Prupe.1G093600_v2.0.a1 Prupe.1G093600_v2.0.a1 Prupe.1G093700_v2.0.a1 Prupe.1G093800_v2.0.a1 Prupe.1G093800_v2.0.a1 Prupe.1G096400_v2.0.a1 Prupe.1G096500_v2.0.a1 Prupe.1G096500_v2.0.a1
pyrus_communis	pycom03g07290 pycom03g07320 pycom10g23300 pycom11g08780 pycom11g08790 pycom11g08810 pycom11g08820 pycom13g23800
rosa_chinensis	RchiOBHm_Chr4g0403711 RchiOBHm_Chr4g0403741 RchiOBHm_Chr4g0403781
rosa_laevigata	RLG00000008950 RLG00000008955 RLG00000008957 RLG00000008959
rosa_multiflora	Rmu_co8470309.1_g000001 Rmu_sc0001496.1_g000015 Rmu_sc0004115.1_g000016 Rmu_sc0004388.1_g000007 Rmu_sc0007461.1_g000001 Rmu_sc0010412.1_g000002
rosa_roxburghii	Rroxscaffold_5G00348330 Rroxscaffold_5G00348340 Rroxscaffold_5G00348350 Rroxscaffold_5G00348400
rosa_rugosa	Rorug04G0045400 Rorug04G0045500 Rorug04G0045600
rosa_samantha	Rh4AG120800 Rh4AG121000 Rh4BG113600 Rh4BG113900 Rh4BG114000 Rh4CG128300 Rh4CG129200 Rh4CG129300 Rh4CG129400 Rh4DG113700 Rh4DG113800 Rh4DG113900
rosa_wichuraiana	Rw0G001200 Rw4G009830 Rw4G009850 Rw4G009860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	197
AciI	CCGC	3 cut(s)	237, 544, 585
AclWI	GGATC	1 cut(s)	219
AcoI	YGGCCR	1 cut(s)	617
AcsI	RAATTY	4 cut(s)	38, 50, 321, 464
AfiI	CCNNNNNNNGG	1 cut(s)	197
AgsI	TTSAA	6 cut(s)	104, 141, 281, 383, 486, 592
AluBI	AGCT	5 cut(s)	29, 275, 386, 404, 540
AluI	AGCT	5 cut(s)	29, 275, 386, 404, 540
Alw21I	GWGCWC	1 cut(s)	398
Alw26I	GTCTC	2 cut(s)	121, 259
AlwI	GGATC	1 cut(s)	219
AoxI	GGCC	1 cut(s)	617
ApeKI	GCWGC	1 cut(s)	537
ApoI	RAATTY	4 cut(s)	38, 50, 321, 464
AspS9I	GGNCC	2 cut(s)	188, 419
AsuC2I	CCSGG	2 cut(s)	98, 603
AsuHPI	GGTGA	2 cut(s)	86, 354
AvaII	GGWCC	2 cut(s)	188, 419
Bbv12I	GWGCWC	1 cut(s)	398
BbvI	GCAGC	1 cut(s)	549
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	2 cut(s)	98, 603
BcoDI	GTCTC	2 cut(s)	121, 259
BfaI	CTAG	1 cut(s)	12
BisI	GCNGC	1 cut(s)	538
BlsI	GCNGC	1 cut(s)	539
Bme1390I	CCNGG	2 cut(s)	98, 603
Bme18I	GGWCC	2 cut(s)	188, 419
BmgT120I	GGNCC	2 cut(s)	188, 419
BmrFI	CCNGG	2 cut(s)	98, 603
BmsI	GCATC	5 cut(s)	439, 461, 500, 550, 590
BpuMI	CCSGG	2 cut(s)	98, 603
Bsa29I	ATCGAT	1 cut(s)	558
BsaJI	CCNNGG	3 cut(s)	502, 602, 614
BsaWI	WCCGGW	1 cut(s)	438
Bsc4I	CCNNNNNNNGG	1 cut(s)	197
BseCI	ATCGAT	1 cut(s)	558
BseDI	CCNNGG	3 cut(s)	502, 602, 614
BseGI	GGATG	2 cut(s)	515, 581
BseLI	CCNNNNNNNGG	1 cut(s)	197
BseRI	GAGGAG	1 cut(s)	10
BseXI	GCAGC	1 cut(s)	549
BshFI	GGCC	1 cut(s)	619
BshVI	ATCGAT	1 cut(s)	558
BsiHKAI	GWGCWC	1 cut(s)	398
BsiSI	CCGG	3 cut(s)	97, 439, 602
BslFI	GGGAC	2 cut(s)	80, 619
BslI	CCNNNNNNNGG	1 cut(s)	197
BsmAI	GTCTC	2 cut(s)	121, 259
BsmBI	CGTCTC	1 cut(s)	121
BsmFI	GGGAC	2 cut(s)	80, 619
BsmI	GAATGC	1 cut(s)	587
BsnI	GGCC	1 cut(s)	619
Bsp1286I	GDGCHC	1 cut(s)	398
Bsp143I	GATC	2 cut(s)	3, 211
Bsp19I	CCATGG	1 cut(s)	502
BspACI	CCGC	3 cut(s)	237, 544, 585
BspANI	GGCC	1 cut(s)	619
BspDI	ATCGAT	1 cut(s)	558
BspPI	GGATC	1 cut(s)	219
BssECI	CCNNGG	3 cut(s)	502, 602, 614
BssMI	GATC	2 cut(s)	3, 211
BssT1I	CCWWGG	1 cut(s)	502
Bst4CI	ACNGT	2 cut(s)	112, 481
BstC8I	GCNNGC	1 cut(s)	542
BstDSI	CCRYGG	1 cut(s)	502
BstF5I	GGATG	2 cut(s)	515, 581
BstKTI	GATC	2 cut(s)	6, 214
BstMAI	GTCTC	2 cut(s)	121, 259
BstMBI	GATC	2 cut(s)	3, 211
BstSCI	CCNGG	2 cut(s)	96, 601
BstV1I	GCAGC	1 cut(s)	549
Bsu15I	ATCGAT	1 cut(s)	558
BsuRI	GGCC	1 cut(s)	619
BsuTUI	ATCGAT	1 cut(s)	558
BtgI	CCRYGG	1 cut(s)	502
BtsCI	GGATG	2 cut(s)	515, 581
BtsIMutI	CAGTG	1 cut(s)	108
Cac8I	GCNNGC	1 cut(s)	542
Cfr13I	GGNCC	2 cut(s)	188, 419
ClaI	ATCGAT	1 cut(s)	558
CseI	GACGC	1 cut(s)	587
CspCI	CAANNNNNGTGG	2 cut(s)	319, 354
CviAII	CATG	4 cut(s)	70, 257, 358, 503
CviJI	RGCY	7 cut(s)	29, 179, 275, 386, 404, 540, 619
CviKI_1	RGCY	7 cut(s)	29, 179, 275, 386, 404, 540, 619
DpnI	GATC	2 cut(s)	5, 213
DpnII	GATC	2 cut(s)	3, 211
EaeI	YGGCCR	1 cut(s)	617
Eco130I	CCWWGG	1 cut(s)	502
Eco47I	GGWCC	2 cut(s)	188, 419
EcoRI	GAATTC	1 cut(s)	38
EcoT14I	CCWWGG	1 cut(s)	502
EcoT22I	ATGCAT	1 cut(s)	454
ErhI	CCWWGG	1 cut(s)	502
Esp3I	CGTCTC	1 cut(s)	121
FaeI	CATG	4 cut(s)	73, 260, 361, 506
FaqI	GGGAC	2 cut(s)	80, 619
FatI	CATG	4 cut(s)	69, 256, 357, 502
FauI	CCCGC	1 cut(s)	537
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	1 cut(s)	538
FokI	GGATG	2 cut(s)	522, 568
Fsp4HI	GCNGC	1 cut(s)	538
FspBI	CTAG	1 cut(s)	12
GluI	GCNGC	1 cut(s)	538
HaeIII	GGCC	1 cut(s)	619
HapII	CCGG	3 cut(s)	97, 439, 602
HgaI	GACGC	1 cut(s)	587
Hin1II	CATG	4 cut(s)	73, 260, 361, 506
HincII	GTYRAC	1 cut(s)	577
HindII	GTYRAC	1 cut(s)	577
HindIII	AAGCTT	2 cut(s)	384, 402
HinfI	GANTC	2 cut(s)	201, 555
HpaII	CCGG	3 cut(s)	97, 439, 602
HphI	GGTGA	2 cut(s)	86, 354
Hpy166II	GTNNAC	1 cut(s)	577
Hpy188I	TCNGA	1 cut(s)	521
Hpy188III	TCNNGA	1 cut(s)	473
Hpy8I	GTNNAC	1 cut(s)	577
HpyAV	CCTTC	1 cut(s)	255
HpyCH4III	ACNGT	2 cut(s)	112, 481
HpyCH4IV	ACGT	1 cut(s)	136
HpyCH4V	TGCA	1 cut(s)	452
HpySE526I	ACGT	1 cut(s)	136
Hsp92II	CATG	4 cut(s)	73, 260, 361, 506
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	2 cut(s)	3, 211
LmnI	GCTCC	1 cut(s)	272
LpnPI	CCDG	5 cut(s)	19, 110, 165, 452, 615
Lsp1109I	GCAGC	1 cut(s)	549
LweI	GCATC	5 cut(s)	439, 461, 500, 550, 590
MaeI	CTAG	1 cut(s)	12
MaeII	ACGT	1 cut(s)	136
MaeIII	GTNAC	1 cut(s)	360
MalI	GATC	2 cut(s)	5, 213
MboI	GATC	2 cut(s)	3, 211
MboII	GAAGA	1 cut(s)	346
MhlI	GDGCHC	1 cut(s)	398
MmeI	TCCRAC	3 cut(s)	153, 446, 499
MnlI	CCTC	5 cut(s)	31, 169, 287, 500, 624
Mph1103I	ATGCAT	1 cut(s)	454
MseI	TTAA	6 cut(s)	48, 60, 219, 288, 350, 375
MslI	CAYNNNNRTG	2 cut(s)	501, 625
MspI	CCGG	3 cut(s)	97, 439, 602
MspR9I	CCNGG	2 cut(s)	98, 603
Mva1269I	GAATGC	1 cut(s)	587
NciI	CCSGG	2 cut(s)	98, 603
NcoI	CCATGG	1 cut(s)	502
NdeII	GATC	2 cut(s)	3, 211
NlaIII	CATG	4 cut(s)	73, 260, 361, 506
NmeAIII	GCCGAG	1 cut(s)	595
NmuCI	GTSAC	1 cut(s)	360
NsiI	ATGCAT	1 cut(s)	454
PctI	GAATGC	1 cut(s)	587
PfeI	GAWTC	2 cut(s)	201, 555
PflMI	CCANNNNNTGG	1 cut(s)	197
PkrI	GCNGC	1 cut(s)	539
PspPI	GGNCC	2 cut(s)	188, 419
RseI	CAYNNNNRTG	2 cut(s)	501, 625
SaqAI	TTAA	6 cut(s)	48, 60, 219, 288, 350, 375
SatI	GCNGC	1 cut(s)	538
Sau3AI	GATC	2 cut(s)	3, 211
Sau96I	GGNCC	2 cut(s)	188, 419
ScrFI	CCNGG	2 cut(s)	98, 603
SduI	GDGCHC	1 cut(s)	398
SfaNI	GCATC	5 cut(s)	439, 461, 500, 550, 590
SinI	GGWCC	2 cut(s)	188, 419
SmiMI	CAYNNNNRTG	2 cut(s)	501, 625
SsiI	CCGC	3 cut(s)	237, 544, 585
SspMI	CTAG	1 cut(s)	12
StyD4I	CCNGG	2 cut(s)	96, 601
StyI	CCWWGG	1 cut(s)	502
TaaI	ACNGT	2 cut(s)	112, 481
TaiI	ACGT	1 cut(s)	139
TaqI	TCGA	3 cut(s)	392, 531, 558
TfiI	GAWTC	2 cut(s)	201, 555
Tru1I	TTAA	6 cut(s)	48, 60, 219, 288, 350, 375
Tru9I	TTAA	6 cut(s)	48, 60, 219, 288, 350, 375
TscAI	CASTG	1 cut(s)	115
TseFI	GTSAC	1 cut(s)	360
TseI	GCWGC	1 cut(s)	537
Tsp45I	GTSAC	1 cut(s)	360
TspDTI	ATGAA	1 cut(s)	449
TspGWI	ACGGA	1 cut(s)	285
TspRI	CASTG	1 cut(s)	115
Van91I	CCANNNNNTGG	1 cut(s)	197
VpaK11BI	GGWCC	2 cut(s)	188, 419
XapI	RAATTY	4 cut(s)	38, 50, 321, 464
XcmI	CCANNNNNNNNNTGG	1 cut(s)	141
XspI	CTAG	1 cut(s)	12
Zsp2I	ATGCAT	1 cut(s)	454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.