Rmu_sc0007461.1_g000001

(R)-mandelonitrile lyase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007461.1
Physical Location & Seq
Reverse (-)
6052 .. 7821
1770 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007461.1_g000001.1.cds

Sequence Viewer

Length: 1287 bp
atgaagtttgtgcgctatgccaccgatctaccgctagaagaagaatacgactacattgtagttgggggaggaacagcaggctgtccattggcaacaactttatccgaaaagtattcagtattggttctagaaagaggcagtgttcctagtgcatatccaagtgtcttgcgtgaagaaaagtttacgagtaatctcatgcaggaagatgatggtaagatcccagctcaaaggttcacctcagaagaaggtgttcgtaatgcaagaggcaggatcttgggtgggtcgagtatgatcaatgctggtttttactccagagccgaaaaggagttctatctcacatctggaattgaatgggatatggatatggtttataaggcatatacttgggtcgaaaacaccaccgtattccgcccggttaatgtggaaacttggcaatctgttgtgaaagaagccttattggaggctggtgttactccggacaatggatttaatttggaacacattccaggagctaaagttgggggttcgatttttgacagtaatggaaggaggcatggagctgttgaactgcttaatagagcagagccaaacaacttgcaagttgcagttcatgccacagtagagaggatcatcttttcttccaatgtgtcaagatgctctgccacaggaattatatacagtgattctgacgggaggtcacatcgggcatttgtacgtggtaaaggagaggttatattgagtgctggaacgattggaagccctcaacttctgctactcagtggtgttggttctcaatcctacctttcgtctcttaaaatcccggtcatctaccctcaacccaacgttggacagtttatgttcgacaatcctcgtaatttcattaacattttgcccccatttctacttgagccttcaatcctacaaattgctggaattacaactgatttctacatagaggctctctcttatatcgtgccaaataattccagcaatgtgactttggcaaatattgcttcgaaagtacctggacccttatcatatggttctctccggttgcaatcatcttctgacgtgagagttgggccgaatgtcagcttcaactactttgcacatccggccgaccttgctcgctgcgttaagggactgagaaaggttgtagacttattaaagacaaactcgttgaaaccatttaggtctcaaaattctttgggtacggaaggttttaacttttatggaccatctctacctacgaaccaagcagatgatgctccctttgaaaccttctga

Protein Analysis

428

Amino Acids

46.83

Weight (kDa)

5.7

Isoelectric Point (pI)

43.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000533)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g08950 FvH4_6g09340
malus_domestica MD00G1012800.v1.1 MD00G1012900.v1.1 MD00G1013000.v1.1 MD00G1013300.v1.1 MD03G1090900.v1.1 MD03G1091100.v1.1 MD03G1091300.v1.1 MD03G1091400.v1.1 MD03G1091700.v1.1 MD03G1091900.v1.1 MD10G1279300.v1.1 MD13G1264000.v1.1 MD13G1264100.v1.1 MD13G1264200.v1.1 MD13G1264500.v1.1 MD16G1093000.v1.1 MD16G1093100.v1.1 MD16G1265300.v1.1 MD16G1265500.v1.1
prunus_persica Prupe.1G007400_v2.0.a1 Prupe.1G092200_v2.0.a1 Prupe.1G092300_v2.0.a1 Prupe.1G092400_v2.0.a1 Prupe.1G092500_v2.0.a1 Prupe.1G092700_v2.0.a1 Prupe.1G092900_v2.0.a1 Prupe.1G093000_v2.0.a1 Prupe.1G093200_v2.0.a1 Prupe.1G093300_v2.0.a1 Prupe.1G093500_v2.0.a1 Prupe.1G093600_v2.0.a1 Prupe.1G093600_v2.0.a1 Prupe.1G093600_v2.0.a1 Prupe.1G093700_v2.0.a1 Prupe.1G093800_v2.0.a1 Prupe.1G093800_v2.0.a1 Prupe.1G096400_v2.0.a1 Prupe.1G096500_v2.0.a1 Prupe.1G096500_v2.0.a1
pyrus_communis pycom03g07290 pycom03g07320 pycom10g23300 pycom11g08780 pycom11g08790 pycom11g08810 pycom11g08820 pycom13g23800
rosa_chinensis RchiOBHm_Chr4g0403711 RchiOBHm_Chr4g0403741 RchiOBHm_Chr4g0403781
rosa_laevigata RLG00000008950 RLG00000008955 RLG00000008957 RLG00000008959
rosa_multiflora Rmu_co8470309.1_g000001 Rmu_sc0001496.1_g000015 Rmu_sc0004115.1_g000016 Rmu_sc0004388.1_g000007 Rmu_sc0007461.1_g000001 Rmu_sc0010412.1_g000002
rosa_roxburghii Rroxscaffold_5G00348330 Rroxscaffold_5G00348340 Rroxscaffold_5G00348350 Rroxscaffold_5G00348400
rosa_rugosa Rorug04G0045400 Rorug04G0045500 Rorug04G0045600
rosa_samantha Rh4AG120800 Rh4AG121000 Rh4BG113600 Rh4BG113900 Rh4BG114000 Rh4CG128300 Rh4CG129200 Rh4CG129300 Rh4CG129400 Rh4DG113700 Rh4DG113800 Rh4DG113900
rosa_wichuraiana Rw0G001200 Rw4G009830 Rw4G009850 Rw4G009860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 372
AccI GTMKAC 1 cut(s) 1158
AccIII TCCGGA 1 cut(s) 475
AciI CCGC 2 cut(s) 32, 409
AclI AACGTT 1 cut(s) 843
AclWI GGATC 3 cut(s) 211, 278, 635
AcoI YGGCCR 1 cut(s) 1116
AcsI RAATTY 1 cut(s) 1201
AfaI GTAC 3 cut(s) 714, 1023, 1213
AfiI CCNNNNNNNGG 2 cut(s) 482, 845
AgsI TTSAA 6 cut(s) 350, 566, 915, 1099, 1183, 1277
AhdI GACNNNNNGTC 1 cut(s) 694
AjiI CACGTC 1 cut(s) 1072
AjnI CCWGG 2 cut(s) 505, 1024
AluBI AGCT 4 cut(s) 224, 512, 560, 1095
AluI AGCT 4 cut(s) 224, 512, 560, 1095
Alw26I GTCTC 2 cut(s) 813, 1200
AlwI GGATC 3 cut(s) 211, 278, 635
Aor13HI TCCGGA 1 cut(s) 475
AoxI GGCC 2 cut(s) 1082, 1116
ApeKI GCWGC 1 cut(s) 1131
ApoI RAATTY 1 cut(s) 1201
Asp700I GAANNNNTTC 2 cut(s) 249, 501
AspLEI GCGC 1 cut(s) 15
AspS9I GGNCC 3 cut(s) 1028, 1082, 1235
AsuC2I CCSGG 2 cut(s) 413, 821
AsuHPI GGTGA 1 cut(s) 226
AsuII TTCGAA 1 cut(s) 1016
AvaII GGWCC 2 cut(s) 1028, 1235
BbvI GCAGC 1 cut(s) 1118
BccI CCATC 2 cut(s) 203, 1246
BciT130I CCWGG 2 cut(s) 507, 1026
BclI TGATCA 1 cut(s) 291
BcnI CCSGG 2 cut(s) 413, 821
BcoDI GTCTC 2 cut(s) 813, 1200
BfaI CTAG 3 cut(s) 35, 128, 147
BisI GCNGC 1 cut(s) 1132
BlsI GCNGC 1 cut(s) 1133
Bme1390I CCNGG 4 cut(s) 413, 507, 821, 1026
Bme18I GGWCC 2 cut(s) 1028, 1235
BmeRI GACNNNNNGTC 1 cut(s) 694
BmgBI CACGTC 1 cut(s) 1072
BmgT120I GGNCC 3 cut(s) 1028, 1082, 1235
BmiI GGNNCC 1 cut(s) 1030
BmrFI CCNGG 4 cut(s) 413, 507, 821, 1026
BmsI GCATC 2 cut(s) 644, 1255
BplI GAGNNNNNCTC 2 cut(s) 947, 979
BpmI CTGGAG 1 cut(s) 295
Bpu14I TTCGAA 1 cut(s) 1016
BpuEI CTTGAG 1 cut(s) 926
BpuMI CCSGG 2 cut(s) 413, 821
BsaAI YACGTR 1 cut(s) 716
BsaI GGTCTC 1 cut(s) 1200
BsaWI WCCGGW 2 cut(s) 475, 1050
BsaXI ACNNNNNCTCC 2 cut(s) 501, 531
Bsc4I CCNNNNNNNGG 2 cut(s) 482, 845
Bse3DI GCAATG 1 cut(s) 997
BseAI TCCGGA 1 cut(s) 475
BseBI CCWGG 2 cut(s) 507, 1026
BseGI GGATG 1 cut(s) 1111
BseLI CCNNNNNNNGG 2 cut(s) 482, 845
BseMI GCAATG 1 cut(s) 997
BseMII CTCAG 3 cut(s) 252, 790, 1136
BseX3I CGGCCG 1 cut(s) 1116
BseXI GCAGC 1 cut(s) 1118
BseYI CCCAGC 1 cut(s) 220
Bsh1285I CGRYCG 1 cut(s) 1119
BshFI GGCC 2 cut(s) 1084, 1118
BsiEI CGRYCG 1 cut(s) 1119
BsiSI CCGG 5 cut(s) 413, 476, 821, 1051, 1115
BslFI GGGAC 1 cut(s) 1155
BslI CCNNNNNNNGG 2 cut(s) 482, 845
BsmAI GTCTC 2 cut(s) 813, 1200
BsmBI CGTCTC 1 cut(s) 813
BsmFI GGGAC 1 cut(s) 1155
BsnI GGCC 2 cut(s) 1084, 1118
Bso31I GGTCTC 1 cut(s) 1200
Bsp119I TTCGAA 1 cut(s) 1016
Bsp13I TCCGGA 1 cut(s) 475
Bsp143I GATC 5 cut(s) 25, 216, 270, 291, 627
BspACI CCGC 2 cut(s) 32, 409
BspANI GGCC 2 cut(s) 1084, 1118
BspCNI CTCAG 3 cut(s) 251, 789, 1137
BspEI TCCGGA 1 cut(s) 475
BspLI GGNNCC 1 cut(s) 1030
BspPI GGATC 3 cut(s) 211, 278, 635
BspT104I TTCGAA 1 cut(s) 1016
BspTNI GGTCTC 1 cut(s) 1200
BsrDI GCAATG 1 cut(s) 997
BssMI GATC 5 cut(s) 25, 216, 270, 291, 627
Bst2UI CCWGG 2 cut(s) 507, 1026
Bst4CI ACNGT 5 cut(s) 403, 539, 619, 680, 852
BstAPI GCANNNNNTGC 3 cut(s) 611, 1010, 1265
BstBAI YACGTR 1 cut(s) 716
BstBI TTCGAA 1 cut(s) 1016
BstC8I GCNNGC 2 cut(s) 79, 1129
BstDEI CTNAG 3 cut(s) 238, 776, 1145
BstF5I GGATG 1 cut(s) 1111
BstHHI GCGC 1 cut(s) 15
BstKTI GATC 5 cut(s) 28, 219, 273, 294, 630
BstMAI GTCTC 2 cut(s) 813, 1200
BstMBI GATC 5 cut(s) 25, 216, 270, 291, 627
BstMCI CGRYCG 1 cut(s) 1119
BstMWI GCNNNNNNNGC 5 cut(s) 611, 1010, 1115, 1124, 1265
BstNI CCWGG 2 cut(s) 507, 1026
BstSCI CCNGG 4 cut(s) 411, 505, 819, 1024
BstV1I GCAGC 1 cut(s) 1118
BstX2I RGATCY 2 cut(s) 216, 270
BstYI RGATCY 2 cut(s) 216, 270
BstZI CGGCCG 1 cut(s) 1116
BsuRI GGCC 2 cut(s) 1084, 1118
BtrI CACGTC 1 cut(s) 1072
BtsCI GGATG 1 cut(s) 1111
BtsI GCAGTG 1 cut(s) 145
BtsIMutI CAGTG 3 cut(s) 145, 685, 784
Cac8I GCNNGC 2 cut(s) 79, 1129
CfoI GCGC 1 cut(s) 15
Cfr13I GGNCC 3 cut(s) 1028, 1082, 1235
Csp6I GTAC 3 cut(s) 713, 1022, 1212
CviAII CATG 3 cut(s) 196, 554, 611
CviQI GTAC 3 cut(s) 713, 1022, 1212
DdeI CTNAG 3 cut(s) 238, 776, 1145
DpnI GATC 5 cut(s) 27, 218, 272, 293, 629
DpnII GATC 5 cut(s) 25, 216, 270, 291, 627
DriI GACNNNNNGTC 1 cut(s) 694
EaeI YGGCCR 1 cut(s) 1116
EagI CGGCCG 1 cut(s) 1116
Eam1105I GACNNNNNGTC 1 cut(s) 694
EciI GGCGGA 1 cut(s) 398
EclXI CGGCCG 1 cut(s) 1116
Eco31I GGTCTC 1 cut(s) 1200
Eco47I GGWCC 2 cut(s) 1028, 1235
Eco52I CGGCCG 1 cut(s) 1116
EcoRII CCWGG 2 cut(s) 505, 1024
Esp3I CGTCTC 1 cut(s) 813
FaeI CATG 3 cut(s) 199, 557, 614
FaqI GGGAC 1 cut(s) 1155
FatI CATG 3 cut(s) 195, 553, 610
FauNDI CATATG 1 cut(s) 1039
FbaI TGATCA 1 cut(s) 291
FblI GTMKAC 1 cut(s) 1158
Fnu4HI GCNGC 1 cut(s) 1132
FokI GGATG 1 cut(s) 1098
Fsp4HI GCNGC 1 cut(s) 1132
FspBI CTAG 3 cut(s) 35, 128, 147
GlaI GCGC 1 cut(s) 14
GluI GCNGC 1 cut(s) 1132
GsaI CCCAGC 1 cut(s) 224
GsuI CTGGAG 1 cut(s) 295
HaeIII GGCC 2 cut(s) 1084, 1118
HapII CCGG 5 cut(s) 413, 476, 821, 1051, 1115
HhaI GCGC 1 cut(s) 15
Hin1II CATG 3 cut(s) 199, 557, 614
Hin6I GCGC 1 cut(s) 13
HinP1I GCGC 1 cut(s) 13
HinfI GANTC 1 cut(s) 683
HpaII CCGG 5 cut(s) 413, 476, 821, 1051, 1115
HphI GGTGA 1 cut(s) 226
Hpy166II GTNNAC 3 cut(s) 183, 234, 1159
Hpy188I TCNGA 5 cut(s) 106, 241, 688, 1069, 1286
Hpy188III TCNNGA 5 cut(s) 128, 312, 342, 476, 651
Hpy8I GTNNAC 3 cut(s) 183, 234, 1159
HpyAV CCTTC 4 cut(s) 239, 540, 921, 1211
HpyCH4III ACNGT 5 cut(s) 403, 539, 619, 680, 852
HpyCH4IV ACGT 3 cut(s) 715, 843, 1071
HpyCH4V TGCA 7 cut(s) 152, 199, 260, 598, 605, 1057, 1109
HpyF10VI GCNNNNNNNGC 5 cut(s) 611, 1010, 1115, 1124, 1265
HpyF3I CTNAG 3 cut(s) 238, 776, 1145
HpySE526I ACGT 3 cut(s) 715, 843, 1071
Hsp92II CATG 3 cut(s) 199, 557, 614
HspAI GCGC 1 cut(s) 13
Kpn2I TCCGGA 1 cut(s) 475
Ksp22I TGATCA 1 cut(s) 291
Kzo9I GATC 5 cut(s) 25, 216, 270, 291, 627
LmnI GCTCC 3 cut(s) 509, 557, 1273
Lsp1109I GCAGC 1 cut(s) 1118
LweI GCATC 2 cut(s) 644, 1255
MaeI CTAG 3 cut(s) 35, 128, 147
MaeII ACGT 3 cut(s) 715, 843, 1071
MaeIII GTNAC 3 cut(s) 469, 696, 994
MalI GATC 5 cut(s) 27, 218, 272, 293, 629
MboI GATC 5 cut(s) 25, 216, 270, 291, 627
MboII GAAGA 7 cut(s) 50, 53, 185, 215, 254, 630, 1056
MflI RGATCY 2 cut(s) 216, 270
MluCI AATT 8 cut(s) 345, 490, 669, 874, 924, 933, 982, 1201
MmeI TCCRAC 1 cut(s) 826
MroI TCCGGA 1 cut(s) 475
MroXI GAANNNNTTC 2 cut(s) 249, 501
MseI TTAA 8 cut(s) 417, 489, 573, 813, 882, 1137, 1166, 1224
MspI CCGG 5 cut(s) 413, 476, 821, 1051, 1115
MspR9I CCNGG 4 cut(s) 413, 507, 821, 1026
MvaI CCWGG 2 cut(s) 507, 1026
MwoI GCNNNNNNNGC 5 cut(s) 611, 1010, 1115, 1124, 1265
NciI CCSGG 2 cut(s) 413, 821
NdeI CATATG 1 cut(s) 1039
NdeII GATC 5 cut(s) 25, 216, 270, 291, 627
NlaIII CATG 3 cut(s) 199, 557, 614
NlaIV GGNNCC 1 cut(s) 1030
NmuCI GTSAC 2 cut(s) 696, 994
NspV TTCGAA 1 cut(s) 1016
PdmI GAANNNNTTC 2 cut(s) 249, 501
PfeI GAWTC 1 cut(s) 683
PfoI TCCNGGA 1 cut(s) 505
PkrI GCNGC 1 cut(s) 1133
Ppu21I YACGTR 1 cut(s) 716
PsiI TTATAA 1 cut(s) 372
Psp1406I AACGTT 1 cut(s) 843
Psp6I CCWGG 2 cut(s) 505, 1024
PspFI CCCAGC 1 cut(s) 220
PspGI CCWGG 2 cut(s) 505, 1024
PspN4I GGNNCC 1 cut(s) 1030
PspPI GGNCC 3 cut(s) 1028, 1082, 1235
PsuI RGATCY 2 cut(s) 216, 270
RsaI GTAC 3 cut(s) 714, 1023, 1213
RsaNI GTAC 3 cut(s) 713, 1022, 1212
SaqAI TTAA 8 cut(s) 417, 489, 573, 813, 882, 1137, 1166, 1224
SatI GCNGC 1 cut(s) 1132
Sau3AI GATC 5 cut(s) 25, 216, 270, 291, 627
Sau96I GGNCC 3 cut(s) 1028, 1082, 1235
ScrFI CCNGG 4 cut(s) 413, 507, 821, 1026
SfaNI GCATC 2 cut(s) 644, 1255
SfuI TTCGAA 1 cut(s) 1016
SinI GGWCC 2 cut(s) 1028, 1235
SmlI CTYRAG 1 cut(s) 905
SmoI CTYRAG 1 cut(s) 905
Sse9I AATT 8 cut(s) 345, 490, 669, 874, 924, 933, 982, 1201
SsiI CCGC 2 cut(s) 32, 409
SspI AATATT 1 cut(s) 1009
SspMI CTAG 3 cut(s) 35, 128, 147
StyD4I CCNGG 4 cut(s) 411, 505, 819, 1024
TaaI ACNGT 5 cut(s) 403, 539, 619, 680, 852
TaiI ACGT 3 cut(s) 718, 846, 1074
TaqI TCGA 5 cut(s) 284, 390, 527, 861, 1016
TasI AATT 8 cut(s) 345, 490, 669, 874, 924, 933, 982, 1201
TfiI GAWTC 1 cut(s) 683
Tru1I TTAA 8 cut(s) 417, 489, 573, 813, 882, 1137, 1166, 1224
Tru9I TTAA 8 cut(s) 417, 489, 573, 813, 882, 1137, 1166, 1224
TscAI CASTG 3 cut(s) 145, 685, 784
TseFI GTSAC 2 cut(s) 696, 994
TseI GCWGC 1 cut(s) 1131
Tsp45I GTSAC 2 cut(s) 696, 994
TspDTI ATGAA 3 cut(s) 17, 599, 868
TspGWI ACGGA 1 cut(s) 1229
TspRI CASTG 3 cut(s) 145, 685, 784
VpaK11BI GGWCC 2 cut(s) 1028, 1235
XapI RAATTY 1 cut(s) 1201
XbaI TCTAGA 1 cut(s) 127
XmiI GTMKAC 1 cut(s) 1158
XmnI GAANNNNTTC 2 cut(s) 249, 501
XspI CTAG 3 cut(s) 35, 128, 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.