Rh4BG114000

(R)-mandelonitrile lyase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Reverse (-)
19264011 .. 19266182
2172 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG114000.1

Sequence Viewer

Length: 942 bp
ATGATGGTAGCCTTCTCAAAGCTATTGAGAAAAGATATCAATTTTATCAAAGTTGAAGGCGACTCCAAGAAGAAGGTGTACGTTCGTAATGCAAGAGGCAGGATCTTGGGTGAGTCGAGTATCAATGCTGGTTTTTACTCCAGAGCCGAAAAGGAGTTCTATCTCACATCTGGAATTGAATGGGATATGGATATGGTTTATAAGGCATATACTTGGGTCGAAAACACCACCGTATTCTGCCCGGTTAATGTGGAAACTTGGCAATCTGTTGTGAAAGAAGCCTTATTGGAGGCTGGTGTTACTCCGGACAATGGATTTAATTTGGAACACATTCCAGGAGCTAAAGTTGGGGGTTCGATTTTTGACAGTAATGGAAGGAGGCATGGAGCTGTTGAACTACTTAATAGAGCAGAGCCAAACAACTTGCAAGTTGCAGTTCATGGCACAGTAGAGAGGATCATCTTTTTTTCCAATGTGTCAAGTTGCTCTGCCACAGGAATTATATATAGTGATTCTGACGGGAGGTCACATCGGGCATTTGTACGTGGTAAAGGAGAGGTTATATTGAGTGCTGGAACGATTGGAAGACCTCAACTTCTGCTACTCAGTGGTGTTGGTTCTCAATCCTACCTTTGGTCTCAAAATTCTTCGGGTACGGAAGGTTTTAACTTTTATGGACCATCTTTACCTACGAACCAAATAGATGATGCTCCGTTTGAAACCTTCTGTCGAACTACAGTTGCCACATTTTGGCATTACCATGGTGGATGCCTTGTGGGAAAGGTGGTCGATAGCAGTTTGCGAGTCATTGGGATCAATTCATTACGTGTTGTTGATGGTTCCACATTCAATTTCTCACCGGGGACCAATCCCCAGGCCACCATTATGATGTTAGGCAGGTATGTTGGCCTTAAGATGCTGCAAGAAAGAGAAGTCAATTGA

Protein Analysis

313

Amino Acids

34.46

Weight (kDa)

7.69

Isoelectric Point (pI)

34.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GMC_oxred_N PF00732 31 - 209 2.2e-12 GMC oxidoreductase
GMC_oxred_C PF05199 235 - 299 1.6e-16 GMC oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000533)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g08950 FvH4_6g09340
malus_domestica MD00G1012800.v1.1 MD00G1012900.v1.1 MD00G1013000.v1.1 MD00G1013300.v1.1 MD03G1090900.v1.1 MD03G1091100.v1.1 MD03G1091300.v1.1 MD03G1091400.v1.1 MD03G1091700.v1.1 MD03G1091900.v1.1 MD10G1279300.v1.1 MD13G1264000.v1.1 MD13G1264100.v1.1 MD13G1264200.v1.1 MD13G1264500.v1.1 MD16G1093000.v1.1 MD16G1093100.v1.1 MD16G1265300.v1.1 MD16G1265500.v1.1
prunus_persica Prupe.1G007400_v2.0.a1 Prupe.1G092200_v2.0.a1 Prupe.1G092300_v2.0.a1 Prupe.1G092400_v2.0.a1 Prupe.1G092500_v2.0.a1 Prupe.1G092700_v2.0.a1 Prupe.1G092900_v2.0.a1 Prupe.1G093000_v2.0.a1 Prupe.1G093200_v2.0.a1 Prupe.1G093300_v2.0.a1 Prupe.1G093500_v2.0.a1 Prupe.1G093600_v2.0.a1 Prupe.1G093600_v2.0.a1 Prupe.1G093600_v2.0.a1 Prupe.1G093700_v2.0.a1 Prupe.1G093800_v2.0.a1 Prupe.1G093800_v2.0.a1 Prupe.1G096400_v2.0.a1 Prupe.1G096500_v2.0.a1 Prupe.1G096500_v2.0.a1
pyrus_communis pycom03g07290 pycom03g07320 pycom10g23300 pycom11g08780 pycom11g08790 pycom11g08810 pycom11g08820 pycom13g23800
rosa_chinensis RchiOBHm_Chr4g0403711 RchiOBHm_Chr4g0403741 RchiOBHm_Chr4g0403781
rosa_laevigata RLG00000008950 RLG00000008955 RLG00000008957 RLG00000008959
rosa_multiflora Rmu_co8470309.1_g000001 Rmu_sc0001496.1_g000015 Rmu_sc0004115.1_g000016 Rmu_sc0004388.1_g000007 Rmu_sc0007461.1_g000001 Rmu_sc0010412.1_g000002
rosa_roxburghii Rroxscaffold_5G00348330 Rroxscaffold_5G00348340 Rroxscaffold_5G00348350 Rroxscaffold_5G00348400
rosa_rugosa Rorug04G0045400 Rorug04G0045500 Rorug04G0045600
rosa_samantha Rh4AG120800 Rh4AG121000 Rh4BG113600 Rh4BG113900 Rh4BG114000 Rh4CG128300 Rh4CG129200 Rh4CG129300 Rh4CG129400 Rh4DG113700 Rh4DG113800 Rh4DG113900
rosa_wichuraiana Rw0G001200 Rw4G009830 Rw4G009850 Rw4G009860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 201
Acc36I ACCTGC 1 cut(s) 888
AccB7I CCANNNNNTGG 1 cut(s) 750
AccIII TCCGGA 1 cut(s) 304
AclWI GGATC 3 cut(s) 110, 464, 821
AcsI RAATTY 1 cut(s) 643
AfaI GTAC 3 cut(s) 80, 543, 655
AfiI CCNNNNNNNGG 3 cut(s) 311, 633, 750
AflII CTTAAG 1 cut(s) 911
AflIII ACRYGT 1 cut(s) 826
AgsI TTSAA 5 cut(s) 56, 179, 395, 719, 850
AhdI GACNNNNNGTC 1 cut(s) 523
AjnI CCWGG 2 cut(s) 334, 873
AluBI AGCT 3 cut(s) 22, 341, 389
AluI AGCT 3 cut(s) 22, 341, 389
Alw26I GTCTC 1 cut(s) 642
AlwI GGATC 3 cut(s) 110, 464, 821
Aor13HI TCCGGA 1 cut(s) 304
AoxI GGCC 2 cut(s) 876, 907
ApeKI GCWGC 1 cut(s) 919
ApoI RAATTY 1 cut(s) 643
Asp700I GAANNNNTTC 1 cut(s) 330
AspS9I GGNCC 2 cut(s) 677, 864
AsuC2I CCSGG 2 cut(s) 242, 861
AsuHPI GGTGA 2 cut(s) 122, 849
AvaII GGWCC 2 cut(s) 677, 864
BarI GAAGNNNNNNTAC 2 cut(s) 62, 94
BbsI GAAGAC 1 cut(s) 592
BbvI GCAGC 1 cut(s) 906
BccI CCATC 2 cut(s) 688, 830
BciT130I CCWGG 2 cut(s) 336, 875
BcnI CCSGG 2 cut(s) 242, 861
BcoDI GTCTC 1 cut(s) 642
BfmI CTRYAG 1 cut(s) 735
BfrI CTTAAG 1 cut(s) 911
BfuAI ACCTGC 1 cut(s) 888
BisI GCNGC 1 cut(s) 920
BlsI GCNGC 1 cut(s) 921
Bme1390I CCNGG 4 cut(s) 242, 336, 861, 875
Bme18I GGWCC 2 cut(s) 677, 864
BmeRI GACNNNNNGTC 1 cut(s) 523
BmgT120I GGNCC 2 cut(s) 677, 864
BmiI GGNNCC 2 cut(s) 841, 865
BmrFI CCNGG 4 cut(s) 242, 336, 861, 875
BmsI GCATC 3 cut(s) 697, 758, 906
BpiI GAAGAC 1 cut(s) 592
BpmI CTGGAG 1 cut(s) 124
BpuMI CCSGG 2 cut(s) 242, 861
BsaAI YACGTR 2 cut(s) 545, 827
BsaI GGTCTC 1 cut(s) 642
BsaJI CCNNGG 3 cut(s) 760, 860, 873
BsaWI WCCGGW 1 cut(s) 304
BsaXI ACNNNNNCTCC 2 cut(s) 330, 360
Bsc4I CCNNNNNNNGG 3 cut(s) 311, 633, 750
BseAI TCCGGA 1 cut(s) 304
BseBI CCWGG 2 cut(s) 336, 875
BseDI CCNNGG 3 cut(s) 760, 860, 873
BseGI GGATG 1 cut(s) 773
BseLI CCNNNNNNNGG 3 cut(s) 311, 633, 750
BseMII CTCAG 1 cut(s) 619
BseXI GCAGC 1 cut(s) 906
BshFI GGCC 2 cut(s) 878, 909
BsiSI CCGG 3 cut(s) 242, 305, 860
BslFI GGGAC 1 cut(s) 877
BslI CCNNNNNNNGG 3 cut(s) 311, 633, 750
BsmAI GTCTC 1 cut(s) 642
BsmFI GGGAC 1 cut(s) 877
BsnI GGCC 2 cut(s) 878, 909
Bso31I GGTCTC 1 cut(s) 642
Bsp13I TCCGGA 1 cut(s) 304
Bsp143I GATC 3 cut(s) 102, 456, 813
Bsp19I CCATGG 1 cut(s) 760
BspANI GGCC 2 cut(s) 878, 909
BspCNI CTCAG 1 cut(s) 618
BspEI TCCGGA 1 cut(s) 304
BspLI GGNNCC 2 cut(s) 841, 865
BspMI ACCTGC 1 cut(s) 888
BspPI GGATC 3 cut(s) 110, 464, 821
BspTI CTTAAG 1 cut(s) 911
BspTNI GGTCTC 1 cut(s) 642
BssECI CCNNGG 3 cut(s) 760, 860, 873
BssMI GATC 3 cut(s) 102, 456, 813
BssT1I CCWWGG 1 cut(s) 760
Bst2UI CCWGG 2 cut(s) 336, 875
Bst4CI ACNGT 4 cut(s) 232, 368, 448, 739
BstAFI CTTAAG 1 cut(s) 911
BstBAI YACGTR 2 cut(s) 545, 827
BstDEI CTNAG 1 cut(s) 605
BstDSI CCRYGG 1 cut(s) 760
BstF5I GGATG 1 cut(s) 773
BstKTI GATC 3 cut(s) 105, 459, 816
BstMAI GTCTC 1 cut(s) 642
BstMBI GATC 3 cut(s) 102, 456, 813
BstNI CCWGG 2 cut(s) 336, 875
BstSCI CCNGG 4 cut(s) 240, 334, 859, 873
BstSFI CTRYAG 1 cut(s) 735
BstV1I GCAGC 1 cut(s) 906
BstV2I GAAGAC 1 cut(s) 592
BstX2I RGATCY 1 cut(s) 102
BstYI RGATCY 1 cut(s) 102
BsuRI GGCC 2 cut(s) 878, 909
BtgI CCRYGG 1 cut(s) 760
BtsCI GGATG 1 cut(s) 773
BtsIMutI CAGTG 1 cut(s) 613
BveI ACCTGC 1 cut(s) 888
Cfr13I GGNCC 2 cut(s) 677, 864
Csp6I GTAC 3 cut(s) 79, 542, 654
CviAII CATG 3 cut(s) 383, 440, 761
CviQI GTAC 3 cut(s) 79, 542, 654
DdeI CTNAG 1 cut(s) 605
DpnI GATC 3 cut(s) 104, 458, 815
DpnII GATC 3 cut(s) 102, 456, 813
DriI GACNNNNNGTC 1 cut(s) 523
Eam1105I GACNNNNNGTC 1 cut(s) 523
Eco130I CCWWGG 1 cut(s) 760
Eco31I GGTCTC 1 cut(s) 642
Eco32I GATATC 1 cut(s) 37
Eco47I GGWCC 2 cut(s) 677, 864
EcoRII CCWGG 2 cut(s) 334, 873
EcoRV GATATC 1 cut(s) 37
EcoT14I CCWWGG 1 cut(s) 760
ErhI CCWWGG 1 cut(s) 760
FaeI CATG 3 cut(s) 386, 443, 764
FaqI GGGAC 1 cut(s) 877
FatI CATG 3 cut(s) 382, 439, 760
Fnu4HI GCNGC 1 cut(s) 920
FokI GGATG 1 cut(s) 780
Fsp4HI GCNGC 1 cut(s) 920
GluI GCNGC 1 cut(s) 920
GsuI CTGGAG 1 cut(s) 124
HaeIII GGCC 2 cut(s) 878, 909
HapII CCGG 3 cut(s) 242, 305, 860
Hin1II CATG 3 cut(s) 386, 443, 764
HinfI GANTC 4 cut(s) 62, 113, 512, 804
HpaII CCGG 3 cut(s) 242, 305, 860
HphI GGTGA 2 cut(s) 122, 849
Hpy166II GTNNAC 1 cut(s) 79
Hpy188I TCNGA 1 cut(s) 517
Hpy188III TCNNGA 3 cut(s) 141, 171, 305
Hpy8I GTNNAC 1 cut(s) 79
HpyAV CCTTC 6 cut(s) 22, 50, 67, 369, 653, 733
HpyCH4III ACNGT 4 cut(s) 232, 368, 448, 739
HpyCH4IV ACGT 3 cut(s) 81, 544, 826
HpyCH4V TGCA 4 cut(s) 92, 427, 434, 922
HpyF3I CTNAG 1 cut(s) 605
HpySE526I ACGT 3 cut(s) 81, 544, 826
Hsp92II CATG 3 cut(s) 386, 443, 764
Kpn2I TCCGGA 1 cut(s) 304
Kzo9I GATC 3 cut(s) 102, 456, 813
LmnI GCTCC 3 cut(s) 338, 386, 715
Lsp1109I GCAGC 1 cut(s) 906
LweI GCATC 3 cut(s) 697, 758, 906
MaeII ACGT 3 cut(s) 81, 544, 826
MaeIII GTNAC 2 cut(s) 298, 525
MalI GATC 3 cut(s) 104, 458, 815
MboI GATC 3 cut(s) 102, 456, 813
MboII GAAGA 3 cut(s) 82, 597, 639
MfeI CAATTG 1 cut(s) 937
MflI RGATCY 1 cut(s) 102
MluCI AATT 8 cut(s) 40, 174, 319, 498, 643, 817, 850, 937
MlyI GAGTC 3 cut(s) 56, 122, 813
MnlI CCTC 7 cut(s) 89, 283, 372, 447, 516, 550, 600
MroI TCCGGA 1 cut(s) 304
MroXI GAANNNNTTC 1 cut(s) 330
MseI TTAA 5 cut(s) 246, 318, 402, 666, 912
MslI CAYNNNNRTG 3 cut(s) 759, 884, 887
MspCI CTTAAG 1 cut(s) 911
MspI CCGG 3 cut(s) 242, 305, 860
MspR9I CCNGG 4 cut(s) 242, 336, 861, 875
MunI CAATTG 1 cut(s) 937
MvaI CCWGG 2 cut(s) 336, 875
NciI CCSGG 2 cut(s) 242, 861
NcoI CCATGG 1 cut(s) 760
NdeII GATC 3 cut(s) 102, 456, 813
NlaIII CATG 3 cut(s) 386, 443, 764
NlaIV GGNNCC 2 cut(s) 841, 865
NmuCI GTSAC 1 cut(s) 525
PdmI GAANNNNTTC 1 cut(s) 330
PfeI GAWTC 1 cut(s) 512
PflMI CCANNNNNTGG 1 cut(s) 750
PfoI TCCNGGA 1 cut(s) 334
PkrI GCNGC 1 cut(s) 921
PleI GAGTC 3 cut(s) 56, 121, 812
PpsI GAGTC 3 cut(s) 56, 121, 812
Ppu21I YACGTR 2 cut(s) 545, 827
PsiI TTATAA 1 cut(s) 201
Psp6I CCWGG 2 cut(s) 334, 873
PspGI CCWGG 2 cut(s) 334, 873
PspN4I GGNNCC 2 cut(s) 841, 865
PspPI GGNCC 2 cut(s) 677, 864
PsuI RGATCY 1 cut(s) 102
RsaI GTAC 3 cut(s) 80, 543, 655
RsaNI GTAC 3 cut(s) 79, 542, 654
RseI CAYNNNNRTG 3 cut(s) 759, 884, 887
SaqAI TTAA 5 cut(s) 246, 318, 402, 666, 912
SatI GCNGC 1 cut(s) 920
Sau3AI GATC 3 cut(s) 102, 456, 813
Sau96I GGNCC 2 cut(s) 677, 864
SchI GAGTC 3 cut(s) 56, 122, 813
ScrFI CCNGG 4 cut(s) 242, 336, 861, 875
SfaNI GCATC 3 cut(s) 697, 758, 906
SfcI CTRYAG 1 cut(s) 735
SinI GGWCC 2 cut(s) 677, 864
SmiMI CAYNNNNRTG 3 cut(s) 759, 884, 887
SmlI CTYRAG 1 cut(s) 911
SmoI CTYRAG 1 cut(s) 911
Sse9I AATT 8 cut(s) 40, 174, 319, 498, 643, 817, 850, 937
StyD4I CCNGG 4 cut(s) 240, 334, 859, 873
StyI CCWWGG 1 cut(s) 760
TaaI ACNGT 4 cut(s) 232, 368, 448, 739
TaiI ACGT 3 cut(s) 84, 547, 829
TaqI TCGA 5 cut(s) 116, 219, 356, 730, 789
TasI AATT 8 cut(s) 40, 174, 319, 498, 643, 817, 850, 937
TfiI GAWTC 1 cut(s) 512
Tru1I TTAA 5 cut(s) 246, 318, 402, 666, 912
Tru9I TTAA 5 cut(s) 246, 318, 402, 666, 912
TscAI CASTG 1 cut(s) 613
TseFI GTSAC 1 cut(s) 525
TseI GCWGC 1 cut(s) 919
Tsp45I GTSAC 1 cut(s) 525
TspDTI ATGAA 2 cut(s) 428, 810
TspGWI ACGGA 2 cut(s) 671, 702
TspRI CASTG 1 cut(s) 613
Van91I CCANNNNNTGG 1 cut(s) 750
Vha464I CTTAAG 1 cut(s) 911
VpaK11BI GGWCC 2 cut(s) 677, 864
XapI RAATTY 1 cut(s) 643
XmnI GAANNNNTTC 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.